Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       <------MYB46(1)                                                                               --------->ICU4                                                                           <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                         xxxxxxxxxxxxxxxx>smallRNA(i)                                                                  <---------ANAC58   <------MYB83                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            --------->ICU4                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------ANAC58  xxxxxxxxxxxxxxxxx                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(i)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     ---------->DOF2                 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   ------>ZmHOX2a(1)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          <---------ZAT18 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      xxxxxxxxxxxxxxxxx>smallRNA(se3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->MYB59      --------->DAG2---------->DOF2--------->ZAT6xxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------TOE2(3)     <xxxxxxxxxxxxxxxxxxsmallRNA(se3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)   <xxxxxxxxxxxxxxxxx     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->YAB1  <----     <xxxxxxxxxxxxxxxxxsmallRNA(fl3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------ICU4  <----     ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxx>smallRNA(se3)       <-----    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ATHB12<----  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)  xxxxxxxxxxxxxxxxxxxxxx  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxx  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -------->Pxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <------ --------DOF2 <----------DOF2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<-----------GT1xxxxxxxxxxxxxxxxxx ------DAG2   xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------WOX13(1)----- -----GT1 --------->ZAT18 xxxxxxxxxxxxxxxx>smallRNA(i)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<--------   cttttgtaaaagtgccctttcctaaaggccatttttaaaactaccccttctaatatgccaaatgactgtcttaccctctgaatgattaggtttcacgttg  16112000                                                                                     <-----------GT1                                                                                    --------->GLK1(1)                                                                               <------NtERF2                                                                              <---------ATERF1(1)                                                                              ------>NtERF2                                                                              --------->LBD16                                                                             <---------DEAR3(1)                                                                             --------->ATERF1(2) <-----------GT1                                                             <---------ATERF1(2) xxxxxx>smallRNA(i2)                                                         --------->DEAR3(1) xxxxxxsmallRNA(se3)                                                        <---------LBD16         - -----MYB46(3)                                                              --------->ATERF1(1)     < --MYB83                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----TOE2(2)                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --MYB46(1)                                           ------>ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) x>smallRNA(si3)                                   <-----------GT1  --------->YAB1 --------->ARR14(2) x>smallRNA(le3)                     xxxxxxxxxxxxxxxx>smallRNA(i) --------->ANAC46 <---------ARR14(2) ---MYB52(1)                <---------ARR11(3)    <-----------GT1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) xxxx>smallRNA(le3)         --------->ARR11(3)   <XXXXXXXXXXXXXXXXXXXXXMIR2933A/B <XXXXXXXXXXXXXXXXXX ---->MYB52(2)          ---------->DOF2  ------>ZmHOX2a(1)xxxxxxxxxxxxxxxx>smallRNA(i)      <-------- -O2          <----------DOF2   ---------->ID1 <---------GLK1(2) <xxxxxxxxxxxxxxxxsmallRNA(s)      <x   gtttcacaaacttcttctttttggcacaaagttcttcgttttcctctccgattttcctctccgatttcactcaaaatcgccggcgaatttccttctgatt  16112100                                                                                             --------                                                                                             <-------                                                                                        <---------HSFC1(2)                                                                                        --------->HSFC1(2)                                                                                   <------NtERF2                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)             <------NtERF2                                                        xxxxxxxxxxxxxxxxxxx            ------>NtERF2                             <-----------GT1   <xxxxxxxxxxxxxxxxsmallRNA(i)           ----------->HVH21                         <XXXXXXXXXXXXXXXXXXXXXMIR2933A/B   --------->HSFB2a(1)           --------->DEAR3(1)                  xxxxxxxxxxxxxxxx>smallRNA(i)       ------>NtERF2           --------->At1g77200                 --------->MYB52(1)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)          --------->RAP2.3(1)                  ------>NtERF2           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->DEAR3(1)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     xxxxxxxxxxxxxxxx>smallRNA(s)        --------->DEAR3(1)  --------->YAB1 --------->ARR14(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->At1g77200  <xxxxxxxxxxxxxxxxsmallRNA(i)     --------->ANAC46  <xxxxxxxxxxxxxxxxsmallRNA(i)----------->HVH21 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     --------->RAP2.3(1) -------->ANAC46 <---------GLK1(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->YAB1  <---------HSFB2a(1) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) --------->YAB1  --------->GLK1(1)--------->ANAC46 ------->TEIL XXXMIR2933A/B  <XXXXXXXXXXXXXXXXXXXXXMIR2933A/B    ------->TEIL     <xxxxxxxxxxxxxxxxsmallRNA(s) -YAB1<xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(i)<---------- xxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(i)   ------>ZmHOX2a(1) <xxxxxxxxxxxxxxxxsmallRNA(i)   tcactcaaaatcgccgacgaattccctctccgatttcactcaaaatcgccaacgaatttcctctccgatttcactcaaaatcgccgacgaattttctttc  16112200                  <------NtERF2                                 <------ZmHOX2a(2)                ----------->HVH21                              <---------ARR11(3)                --------->DEAR3(1)                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                --------->At1g77200                            --------->ARR11(3)               --------->RAP2.3(1)                            <---------At4g35610         xxxxxxxxxxx            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          xxxxxxxxxxxxxxxx>smallRNA(i)    <---------LBD16           <xxxxxxxxxxxxxxxxsmallRNA(i)                   <xxxxxxxxxxxxxxxxsmallRNA(s)  <xxxxxxxxxxxx         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <---------ARR14(2)          <xxxxxxxxxxxxxxx         ---------->DOF2                                 --------->ARR14(2)         <xxxxxxxxxxxxxxxx         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <------ZmHOX2a(1)         <xxxxxxxxxxxxxxxxsmallRNA(s)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           ===============HOX2a_HOX2a--------->ANAC58  <---------ARR14(2)                             <---------At4g35610              --------->ANAC58  --------->ARR14(2)                     xxxxxxxxxxxxxxxx>smallRNA(s)         --------->ANAC46   ----  --------->GLK1(2)         ------>ZmHOX2a(1)    --------->At4g35610          --------->ANAC58  <---- ------------->WRI1     <-----------GT1<xxxxxxxxxxxxxxxxsmallRNA(i)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) ---DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(s) --------->ANAC46 --------- xxxx>smallRNA(le3)    --------->GLK1(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ANAC58  ----- xx>smallRNA(fl3)------>NtERF2       <-----------GT1   xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxx -GT1 --------->LBD16 ------->TEIL <---------ATHB12----------->HVH21      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   tgagaatccccaaaatcgccgacgaatttcctctccaataaacctgttcttcgctgaaggattcagatcatttctctacgacgcaaacaatccccagaga  16112300                                                                        ----------->HVH21                                                                        ----------->TGA1                                                                       xxxxxxxxxxxxxxxx>smallRNA(i)                                                                       ------>ZmHOX2a(2)                                                                      <---------At4g35610                                                                      <------ZmHOX2a(2)                                    <---------AHL20(2)               <---------ARR11(3) xxxxx>smallRNA(s)         <---------YAB1                            --------->AGP1 xxxxsmallRNA(s)         --------->YAB1                              --------->ARR11(3) xsmallRNA(i)     <------------MYB.PH3(1)                   <---------AHL20(2) xxxxxxxsmallRNA(i2)   <-----------TBP                     --------->AHL20(2)        xxxxxxxxxxxxxxxx ----->GLK1(1)--------->At5g28300  --------->AHL20(2)      <-----------TBP        <xxxxxxxxxxxxxxxxxx -----ARR11(3)--------->DOF5.7(2)  <-----------TBP    ------------>CBF--------->CCA1(2) >LBD16<------ZmHOX2a(2)<---------YAB1          <---------AHL20(2)   <---------AGP1--------->YAB1  <- ---->ARR11(3)<xxxxxxxxxxxxxxxxsmallRNA(s)     --------->AHL20(2)    <---------ARR14(2)            -- xxxxxxsmallRNA(i2)  <---------MYB52(1)        <-----------TBP       --------->ARR14(2) xxxxxxxxxxxxx   tatcgatagatcagacggtaaccgtttttataatcgattttatagtcgattttatagtcaattttatagtagatctgacgctgtttcataacatgttttg  16112400                                                                  <---------ZAT14                                                                  --------->ZAT14                                                                  --------->ZAT18                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                           --------->GLK1(2)                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                         <------ZmHOX2a(1)<---------ARR14(2)                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                     --------->ALFIN1     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 --------->GLK1(1)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <---------GLK1(1)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    *TSS    ----------->GT1   <---------ANAC58    --------->DAG2<xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxx>smallRNA(fl3)        <---------ANAC46   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxsmallRNA(se3)           <---------ANAC58   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <---------LBD16 --------At4g35610    ------>ZmHOX2a(1)--------->ARR14(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<------ ------->At4g35610  <---------ICU4   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->ARR14(2)  ------- xxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------ZAT18    --------->YAB1   cagatggattcagagagtgaaatccttacattgcctgaacaaatctacagagaaggtgaggaatctattgcactgggaaccgttcaacaatactcggatt  16112500                         <----------DOF2                                                   <xxxxxxxxx                      xxxxxxxxxxxxxxxx>smallRNA(i)                                    xxxxxxxxxxxxxxx                    <------ZmHOX2a(1)                         <---------MYB52(1)    <xxxxxxxxxxxxxxxx           ---------->DOF2                                 <-------TEIL  ------>ZmHOX2a(1)<xxxxxxxxxx ---ARR14(2)xxxxxxxxxxxxxxxx>smallRNA(fl3)    <---------At4g35610      <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -->ARR14(2)--------->DAG2                  <---------HSFB2a(2)<----------DOF2   xxxxxxxxxxxxxxxxxxxx   ggaatttagttagtaaagtagaggaagctttaggcgagtgtttatttcagaagattagaagttcgttttttggtcctctagttgaattgggaccaaaaat  16112600                         --------->LBD16                        <---------HSFC1(1)                        --------->HSFC1(1)               ----------->GT1                        --------->HSFB2a(2)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        <---------HSFB2a(2)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  <---------ARR14(2)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                  --------->ARR14(2)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  --------->ARR11(3)               <---------ZAT2                  <---------GLK1(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->ZAT2  ---------->DOF2 xxxxxxxxxxxxxsmallRNA(s2)     <---------ARR11(3)  <---------At4g35610 x>smallRNA(i) --------->YAB1  --------->ARR11(3) <xxxxxxxxxxxxxxxxsmallRNA(s)                 ------ xxxxxxxsmallRNA(l2)   <---------LBD16 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <----------DOF2<----- xxxxxxxxxxxxxsmallRNA(i2)     --------->GLK1(2)  ----------->RAV1(1)    <------ZmHOX2a(2)     <----- xx>smallRNA(si3) <---------ARR11(3) --------->ZAT6--------->At4g35610 <------ZmHOX2a(1)     --------   gaaggctaagaagggaatcagattttctggaaaaatctttcactatctcatgcagcagagagtgaaaacaaaaggatcaactctttggtttagagtggat  16112700                                                                                     <---------ANAC46                                                                                  <-----------RAV1(1)      ------>MYB46(1)                                                             ------->GAMYB      ------>MYB83                                                              <---------At5g28300      --------->ARR14(2)                                                       <-----------GT1      <---------ARR14(2)                                                       --------->MYB52(1)    --------->AtMYB61                           ---------->DOF2               <---------AHL20(2) --->ARR14(2)                             ----------->GT1                     --------->AHL20(2) <--- ----ARR14(2)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <-----------GT1  --------->TOE2(3)    -------- ----GLK1(2)--------->ARR14(2)            --------->ANAC55(2)           --------->TOE1(3)   --------- --->ARR10 <---------MYB52(1)             <---------ANAC55(2)       ---------->DOF2<-----------HVH21   tctcaacctatccgtttctccttgagagagttctatctcacaacaggtaataaagttttacaatcgtttttaaagcttaattaactgtcgtagaatgatt  16112800                      <---------ANAC58             --------->MYB52(1)     <xxxxxxxxxxxxxxxxsmallRNA(le3) --------->ANAC46     <---------ANAC46 --------->ANAC58     <---------ANAC58 --------->ANAC58   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <-----------HVH21 --------GT1 <---------ARR14(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             <----------DOF2 ->ATHB12 <---------AtLEC2       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              ---------->DOF2 >ICU4  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   -------   tacaaggcatttgcataactgtttgcgtagtttacaatcgtttttaaaacataagtaagtgtcatagataatttacaagggattttaaaagcttttaaaa  16112900  Previous    Next  AGI:  At3g44500.1    Description:  transposable element gene. similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04010.1); similar to hypothetical protein 26.t00072 [Brassica oleracea] (GB:ABD65017.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) Range:  from: 16112404    to: 16117068    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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