Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        --------->ANAC55(2)                                                                                      --------->TGA1a                                                                                      --------->ANAC58                                                                                      <---------ANAC55(2)                                                                                      --------->ANAC58                                                                                      <---------TGA1a                                                                                   ----------->HVH21                                                                                  <-----------HVH21                                                                                 <---------ANAC58                                                                                 <---------ANAC58                                                                                 --------->ANAC46                                                                               --------->ALFIN1                                                                             --------->ALFIN1       <                                                                            ------->MYC2     --------                                                                            <-------MYC3     <-------                                                                            <-------MYC2     --------                                                                            ------->MYC3     <-------                                                                           <---------ANAC58  --------                                                     --------->ANAC58      <---------ANAC58 ------>NtERF2                           <---------At4g35610       --------->ANAC58      <------NtERF2--------->ANAC58                       <---------ARR14(2)        <------NtERF2             <---------ANAC46<---------ALFIN1                       --------->ARR14(2)       ------>NtERF2             ------>NtERF2 --------->ANAC58             <-----------HVH21                 --------->DEAR3(1)        <---------ANAC46 <------NtERF2            --------->DEAR3(1)            <---------ANAC58               <---------ANAC58------>NtERF2         <---------ALFIN1  --------->At4g35610--------->DEAR3(2)         <---------ANAC58<-----------HVH21  ------>NtERF2  <---------ETT(1)         <---------ANAC58           <-----------RAV1(2)--------->ANAC46   tctccgactcaacaccgtcgcgacaattccgctcaaaatcgataccttgccgacgaagcaactcgatcgaatcaggcgcgtgtgcgtcacgcgccacgtc  15963700                                          <-----------HVH21                                       <---------ARR14(3)    --------->ANAC58                   --------->ARR14(3)    <---------ANAC55(2)              ----------->ARR10    --------->ANAC46           <---------DEAR3(1)     --------->HSFB2a(2)    --------->ANAC55(1)       ------>ZmHOX2a(1)       <---------HSFB2a(2)    --------->ANAC55(2)   <---------ARR14(2)        --------->ALFIN1 <---------DOF5.7(2)    --------->ANAC58      ------->TEIL <---------ARR14(2)          <---------MYB52(1)   <---------LBD16        --------->ARR14(2)   --------->DEAR3(1)  --------->DOF5.7(2)  --------->MYB52(1) --------->At4g35610 ------>ZmHOX2a(2)        <-------GAMYB -----------HVH21  <---------HSFB2a(2) --------->ARR11(3)         --------->TOE1(3) ->bZIP60(2)       --------->HSFB2a(2) --------->ARR14(2)      <---------DOF5.7(2) --O2              <-----------RAV1(2) <---------ARR11(3)      <---------At5g28300 ->TGA1a   <---------AHL20(2) ==================HOX2a_HOX2a<---------MYB46(3)              ------>MYB46(1) --TGA1a   --------->AHL20(2) =================HOX2a_HOX2a <------MYB83                    ------>MYB83 ->O2--------->LBD16 <---------At4g35610<------ZmHOX2a(2)  <------MYB46(1)              --------->DEAR3(2)   gaagtcacggaaattaaactcccagatgaatcctcggtgaagatcgtcaccgaggtctgggaggttaccgttaacatcagagagagtgagaccgacttgg  15963800                                                                                       <------NtERF2                                                                                      ------>NtERF2                                                  --------->ARR14(2)  <---------ARR14(2)                                                  <---------ARR14(2)  --------->ARR14(2)    ---------                                           ------>ZmHOX2a(2)       ------>ZmHOX2a(2)  --------->LBD16                                          <------ZmHOX2a(2)       <------ZmHOX2a(2)  --------->LBD16             --------->DEAR3(1)          <---------ARR14(2)      --------->ARR14(2)  <---------LBD16             <---------DEAR3(1)          <---------ARR11(3)      <---------ARR14(2)  <---------ANAC46  <---------At4g35610           ----------->GT1 <------NtERF2   <---------GLK1(1)   <---------LBD16  --------->At4g35610  <----------DOF2   --------->ARR14(2)  --------->LBD16      --------->ANAC46  --------->ZAT2  <---------MYB52(1)     --------->ARR11(3)<---------LBD16        --------->ANAC58  <---------ZAT2  --------->DOF5.7(2)---------->DOF2<-------TEIL--------->GLK1(1) --------->ANAC58   attaagctgagagcgtcgacgttagctttaagaagagtataaagatcgtcgggattcgtaaaccggagatcggatttgaaaatcacgccgggaaattctg  15963900                                                                <-----------GT1                                                              <-----------ARR10                     <                                                              --------->GLK1(2)              --------                                                             --------->ARR14(2)             <--------                                                    <---------YAB1                     --------->O2--                                                 --------->GLK1(2)  ------>NtERF2      --------->ANAC58                                     --------->ATHB12        <---------GLK1(2)         --------->TGA1a      <---------TOE2(3)     --------->ATHB12    <---------GLK1(2)  --------->DEAR3(1)  --------->ANAC58 >GLK1(2)     ----------->GT1     <---------At4g35610        <---------ARR14(2)    <-----------HVH21<   tgtccattgagataaatggataatcgtcgatgatttcgctgattagttcaaattctgattcgagattctccgcccagacttcacgagtcacgactgtgac  15964000                             <---------YAB1                             --------->ICU4                            <---------TOE2(3)                      <------MYB83                      ----------->GT1             <------ZmHOX2a(2)            --------->ARR14(3)--------->ATHB12                           <------MYB46(1)            --------->ARR11(3)<---------ICU4                             ----------->GT1  --------->SPL7      <------MYB46(1)                                  *TSS <---------MYB52(1)  --------->MYB59                                --------->ATHB12 -----------HVH21    <---------AtMYB61                             <---------YAB1 --->HVH21  <---------ARR14(3)--------->YAB1                <---------AtMYB61     <---------ZAT6   <- ---HVH21   <---------ARR11(3)-------->HAHB4              <----------DOF2<------MYB83 --------->MYB52(2) ------->DEAR3(1)  <---------MYB52(1)                   --------->HSFC1(2)  <---------MYB46(3)   <--- ---------SPL7------>ZmHOX2a(2)  ------>ZmHOX2a(2)      <---------HSFC1(2)  --------->ATHB12<--------   accgtccggtttgagatctcggtttggtttaatgatcgccattgaaactgaatttagaagctttggtttatgatttggtgattagagttagtttgtgtta  15964100                                                                                  <---------ANAC46                                                                                 <------NtERF2                                                                               <---------ANAC46                                                                               --------->ALFIN1                                                                             <---------MYB46(3)                                                      --------->ALFIN1      --------->ALFIN1                                            <------ZmHOX2a(1)         <-----------HVH21  <---------WOX13(1)                                        <---------ANAC58             --------->ANAC46   <---------ANAC58 --------AHL20(2)                       <---------ANAC58         --------->CCA1(2)<---------ANAC58 --------TBP --------->ALFIN1           <---------ANAC46 <---------PCF2   <---------O2  <---------ANAC58 -ZAT6    --------->GLK1(2)    ---------->DOF2  >>>>>>>>>TBF1   --------->ARR14(2)<---------ANAC58 <-   tatatatgtgagaatgtgtgtgtgaaacagagtgaaagagttgcgaggaagaagaagtggggacgagaaacgcgtcaagtggtggggtttgagtgactat  15964200                                                                                                  ---                                                                                             -------- <---------ANAC55(2)                                                                         -------- ----------->GT1                                        <---------AHL20(2)                   <------- --------->ANAC58                                      <---------AHL20(2)                   --------- --------->ANAC58                                  <---------AHL20(2)   <-----------GT1     <-------- --------->ANAC55(2)         <---------ALFIN1    <----------DOF2    <---------MYB52(1)   <---------YAB1 ----------GT1            <---------ZAT18  <---------AHL20(2)<---------YAB1              ---------->ID1   gtaacgtaacttgactcggtccaagttggccactctctactgggtttaattcttttatttattgttattcgttttttctattttagtatttgtcattatt  15964300                                                                                             --------                                                                                             <------ZmHOX2a(2)                                                                                  --------->ATHB51                                                                                  --------->ATHB12                                                                                  -------->ATHB1                                                                                 <---------YAB1                                                                               <---------------AGL15                                                                               --------------->AGL15                                                                              <-----------------AGL3                                                                              ----------------->AGL3 -------->GT1                                                                 <-----------------AGL2 ->ATHB12                                                                 ------->TEIL      <-------- ->ATHB51                     <------ZmHOX2a(1)                          <---------CCA1(2)  --------- --ICU4               <-----------RAV1(1)                           --------->MYB52(1)      <-------- >ICU4               ------->TEIL                 <-----------RAV1(1) --------->ZAT6        --------- -YAB1   --------->ANAC46<---------REM1(1)       <---------TOE2(3)  <-----------GT1       -----------   gggttatatacactgaatatatgtatgttgtaggaaaattcaaatttcataaatgttgttcatcttggattaactgtatctctattattgggaagatcca  15964400     >>>>>>>>>RAP2.2  <---------CCA1(2) ->CCA1(2)                         <---------AHL20(2)                                          ------ -ARR14(2)                         --------->AHL20(2)                                         <------ >ARR11(3)                         <---------YAB1            --------->AHL20(2)               ------- -ARR11(3)             <---------AHL20(2)                    <---------AHL20(2)        --------->ZAT6 >ARR14(2)        ------->TEIL <---------AHL20(2)      ----------->GT1          ---------->DOF2<----- >ARR10       ------->TEIL     --------->AHL20(2)  <---------YAB1 <-----------GT1 ----------->GT1   attcatatctaaaacgaatgtatattttcttatatatataattgaatgagtttatttttgtaaaaaaataacatttttctaagaaagtaactctaattta  15964500          --------->AHL20(2)         --------->AHL20(2)                                                     <---------ARR11(3)   --------->AHL20(2)                                               <---------TOE1(3)  --------->AHL20(2)                                                <---------TOE2(3) --->AHL20(2)                                            <---------DAG2         --------->ARR11(3) ---AHL20(2)                                             <----------DOF2 --------->AHL20(2)        -- -->AHL20(2)            --------->ZAT6                <-----------GT1----------->GT1              <-- ----AHL20(2)  --------->AHL20(2)       <---------AHL20(2)         ---------->DOF2              -----   aaaaataaaaaataaaaaaaaattcaacagtagtactataagttaattgtgtcaataaacttttttttttaaagttaaattagatattgtggaggtaatg  15964600  Previous    Next  AGI:  At3g44260.1    Description:  CCR4-NOT transcription complex protein, putative. similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT5G22250.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76920.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941) Range:  from: 15963032    to: 15964071    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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