Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      --------->ZAT6            --------->AHL20(2)                            --------->AHL20(2)                <---------AHL20(1)                            <---------AHL20(1)                --------->AHL20(1)                            --------->ARR11(3)                <---------AHL20(2)                            --------->AHL20(1)      --------->TOE1(3)    <----------DOF2         <---------ARR11(3)      --------->TOE2(3)                              <- -------->KAN4(2)           <---------AHL20(2)      --------->YAB1              <-------TEIL     ---- ----->GT1 <---------WOX13(1)<---------AHL20(2) --------->AHL20(2)         ---------->DOF2------->TEIL >YAB1  <---------YAB1     --------->AHL20(2)   <---------AHL20(2)     ---------->DOF2 <---------YAB1   tatattctttttgatagatttatctgaaaatatatttttcactaaaacaattaatcttaactaataaaatggaaaaagaaagttcatttatgaatttttg  15950800                                                                                              -------                                                                                            <--------                                                                                            ---------                                                                                      ---------->DOF2                                      <---------ZAT6                                 --------->AHL20(2)                                  <---------ANAC58                               <---------------AGL15          --------->YAB1          <---------ANAC58                              ------------>CBF       --------->YAB1       <---------YAB1                         ==============================MADS_MADS      --------->ZAT6        <---------TOE2(3)                      <----------DOF2  <---------ATHB12    <-----------GT1        --------->AHL20(2)                      <---------DAG2--------------->AGL15 ---------DOF2             --------->YAB1          ----------->GT1 <---------------AGL15   <---------KAN4(2) ------>ID1             --------->TOE2(3)      --------->ARR11(3)  --------------->AGL15  --------->YAB1   tctttttaacaataagagtctcatcacattaatattgctagtgatgaaatatgttgaaaaataggtttacttttggtagtaaaccaataaaagaataatc  15950900                                                 ----------->GT1                                                --------->DAG2           ------------>CBF                           ----------->GT1    ---------->DOF2           <-----------GT1             <                       <---------AHL20(2)   ----------->HVH21           --------->YAB1            ---                      --------->YAB1       --------->TOE1(3)         <---------ICU4       --------->ANAC58     ---------->ID1  <---------YAB1 <---------AHL20(2)            ----------->GT1         --------->ANAC58 -->GLK1(2)        --------->YAB1   --------->AHL20(2)   --------->AHL20(2)           --------->ANAC58 -KAN4(1)   --------->ATHB12        ----------->TBP      <---------AHL20(2)           --------->ANAC58 >KAN4(1)<------------CBF<------------CBF--------->MYB52(1)   --------->YAB1  --------->YAB1      ---   tgaatttgtagcattgatttcttataatattgtgaattttaaatacctgaaaggtgaatttaaatgatcagtaattacaatattagtctcgcaagaaaac  15951000                                                            ----------->HVH21                                                           <-----------HVH21                                                           --------->At5g28300                                                           <------NtERF2                                                          <---------DEAR3(2)                                                          <---------ATERF1(1)                                                          <---------MYB46(3)                                                         <---------DEAR3(1)                                                         <---------ANAC46                                                        --------->ATERF1(1)             <---------HSFB2a(2)                        ------>NtERF2             --------->HSFB2a(2)                        <------NtERF2            ----------------->AGL1                      <---------ABI4(1)            ========================================================================MADS_MADS            ----------------->AG                       <---------RAP2.3(1)        <----------DOF2                                <---------RRTF1(1)        <---------DAG2                                <---------DEAR3(1)    <-----------GT1                                   <---------RAP2.3(2)  --------->HSFB2a(1)                                 <---------RAP2.6(2)  --------->HSFC1(2)                                  <---------RAP2.3(3)  <---------HSFB2a(1)                                 <---------RRTF1(3)  <---------HSFC1(2)                                  <---------RRTF1(2) ---------ARR11(3)              <---------AHL20(2)   <---------LBD16<---------------AGL15 ------>ANAC58                  --------->AHL20(2)  <-----------RAV1(1)  ---------->DOF2 ------>ANAC58     ----------->GT1               <----------DOF2    --------------->AGL15           <   aagaaatttccttttccaaaaccgaaataactaataaaatcaaatccaagacttttgcggcggtgacagactctataaagaagtttcagtcccaagactc  15951100                                                                                                  ---                                                                                                  ---                                               <------------CBF                                   <--                                          <---------LBD16                                      ------                                  ----------->GT1                 --------->At4g35610          <-----                    --------->HSFB2a(2)--------->GLK1(1) <------ZmHOX2a(1)                     ------ ---------ALFIN1    <---------HSFB2a(2)<---------GLK1(1) <----------ID1            <---------GLK1(2)   cctcacattattttctctcgctctcgaacaaaatggtcgtgaaatctggaattgaaataggaacaaggagatgagtttaatagaagattgtctaagaagc  15951200                                                                             <---------ANAC46                                                                        --------->ANAC58                                                                        --------->ANAC58                                                                        ----------->GT1                                                               <---------At4g35610 <---------GLK1(1)     --------->ATHB12                                          --------->At4g35610 --------->CCA1(2)  <---------MYB52(1)                                         <-----------RAV1(2)  --------->ARR14(2) ----->P                                                   ----------->RAV1(1)    <---------ARR14(2) ------>MYB52(1)                                          ----------->HVH21  <---------AtLEC2     <-- -------At5g28300                                      --------->TOE2(2)<---------HSFB2a(1)       --- --->HSFC1(2)                                          --------->TOE1(2)--------->HSFB2a(1)       --- ----HSFC1(2)                      <----------DOF2 --------->ANAC46  <------ZmHOX2a(1)         <----- --->At4g35610           <-----------GT1         --------->ANAC46  <---------------AtSPL8      <-----   taccgtttcattgcaatagacacagagtttccatctactttgagggaaactacacaacatgcgacagatgaggaacgttacatggatatgagttttagtg  15951300                                                                        <------ZmHOX2a(2)       <----                                                                       <---------ARR11(3)      <----- -------ZAT14                                                          --------->ARR11(3)     ------- ------>ETT(2)                                                  --------->TOE1(2)             ------- ------>ZAT18                                               ===================HOX2a_HOX2a  --------- ----ZAT6           <---------MYB52(1)    <XXXXXXXXXXXXXXXXXXXXMIR776 --------->GLK1(1)     <-------- ----ANAC46     ------>ZmHOX2a(2)         <---------YAB1    <------ZmHOX2a(1)          <---------LBD16   tggacagagcaaaattgatccagttagggctaactctgttcgatatcaatggaagaattggaggaacatgggagatcaatttctctgatttcggagttga  15951400                                                 ------>ZmHOX2a(2)                                                =============HOX2a_HOX2a                                                --------->CCA1(2)                                                <------ZmHOX2a(2)                                               <---------ARR11(3)                                               --------->ARR11(3)                                        ------->GAMYB                                     --------->MYB52(1)                                  --------->ANAC55(1)                                  --------->ANAC58                             ===========================HOX2a_HOX2a                             ==========================HOX2a_HOX2a -----TOE2(3)                ------>ZmHOX2a(1) <---------AGP1                       <---------TOE1(2) ----DOF5.7(2)              <---------ANAC46<---------HSFB2a(2)                --------->GLK1(2)    < -->WRKY12                  --------->TOE2(3)  --------->AGP1                 <---------GLK1(2)     - ---->HVH21             <---------GLK1(1)   --------->HSFB2a(2)            --------->YAB1     <------ >At4g35610   --------->GLK1(1)   --------->ANAC58    <------ZmHOX2a(1)   <---------At4g35610 ------- -At4g35610   <---------GLK1(1)   --------->ANAC46  <---------TOE2(3)     --------->At4g35610 <------   cgatgctagaaacgagaaatccattgagttccttagacgcaacggtctagatctaaggaagattagagaagagggcatcagaatcgagggtttcttctcg  15951500                                                              --------->ANAC46                                                        <---------AGP1                                                        --------->ARR11(3)                                                        ------->TEIL                                                        <---------ARR11(3)                                              --------->O2    --------->ANAC58                                              <---------O2------>ZmHOX2a(2)                                              --------->ANAC55(2)                                              <---------ANAC55(2)                                     <---------ANAC58   <---------ARR14(2)                                     <---------ANAC58   --------->ARR14(2)                                     <---------ANAC46  <---------CCA1(2)           --------->At4g35610  <---------KAN4(1)  <---------ANAC46 ---------ARR11(3)           ====================================HOX2a_HOX2a -------->ARR11(3)           <------ZmHOX2a(1)--------->TGA1a --------->ANAC58                    --- ---HSFB2a(2)             <------ZmHOX2a(1)   <---------TGA1a--------->SPL7                  -------- -->HSFB2a(2)           --------->ALFIN1  <-----------HVH21--------->TOE1(2)             <-----------GT1 ---LBD16  <---------At4g35610  --------->KAN4(1)  <---------AtLEC2         <-----------GT1<---------LBD16   gagatgttttggatgctgaagaagacgaggaggaatattacttgggtcacgtttcatggatcttacgacatcgcctatttactcaagggtttcaccggag  15951600              <---------ZAT14            --------->bZIP60(1)            <---------bZIP60(1)                                                 <------NtERF2<------ZmHOX2a(1)         ----------->HVH21                                                     <---------MYB46(3)      --------->TOE2(2)                                             ---------->DOF2     ----------->HVH21     ----------->RAV1(2)                                     <---------YAB1    --------->MYB55(2) <----------DOF2                      <------NtERF2        <-----------GT1    <---------ANAC58 ------>GLK1(2)                    <-----------HVH21<---------ARR14(2)        <---------ANAC46 ->LBD16<-----------HVH21    ---------->DOF2        --------->ARR14(2)        <---------ANAC58   aagctttacctgtgacttcagagaggttttctaaagcggtcgcgagagttctcggttctgtttacgatttgaaagtcatggcgggtcgatgtgaaggact  15951700  Previous    Next  AGI:  At3g44240.1    Description:  CCR4-NOT transcription complex protein, putative. similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT1G61470.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ68597.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941) Range:  from: 15951171    to: 15951890    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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