Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                                                                                                 ----                                                                                                 ----                         <---------WOX13(1)                                                      ----                         <--------P                                                              ----                        <-------GAMYB                                                            ----                       ----------->GT1                                                      ---------                 <---------TOE2(3)                                                          <--------               <---------AHL20(2)                                                     ------>MYB46(1) --------->CCA1(2)     <---------MYB46(3)                                             ------>MYB83--- ---------ARR11(3)    <---------AtMYB61                                    <---------ARR11(3)  ------ -------->ARR11(3)  --------->ALFIN1             ----------->GT1           --------->ARR11(3) ------- ->YAB1        --------->AHL20(2)               --------->DAG2     <---------ZAT2   <---------MYB111(1) -ATHB12   --------->AHL20(2)           ------------------------>ANAC81<---------ALFIN1 --------->YAB1 -YAB1     <---------AHL20(2)   ---------->DOF2---------->DOF2     --------->ZAT2  --------->ANAC46 -   gagatattagtttttaattaatgtgtggttgattaaaagaaaaaaaaaaaaaagttaaacaaaaaccctagctccactatcttccaccaaatataaacca  15911400 -------MYB55(2) -->MYB46(1)           <---------ATHB12 ----->ANAC58    --------->ANAC46 ----->ANAC46 --------->ZAT2----------->RAV1(1) ----->ANAC58 --------->ZAT14 -->MYB83     --------->REM1(2)                                                                   <-- >ANAC46   --------->DEAR3(1)                                                                   <---- ---GT1 <---------ALFIN1   --------->MYB46(3)                                          <------------CBF ------>MYB46(3) --------->ANAC58                                       <---------ARR14(2)      ----- --->AtMYB61  <---------ZAT14               <----------DOF2   <---------ZAT14          <---------ANAC58 -->MYB46(3) --------->ALFIN1  ---------->DOF2     >>>>>>>>>TBF1        --------->ARR14(2)      <---- --------->DOF2  --------->ANAC58      ---------->DOF2     --------->At4g35610         <---------ANAC58   cccaaagtctccaccgtgcaggcaaatcaacaacaaagactcaaagctttgaagaagaagttgctgaactgttgaatccgacttcaatggattgtcttcc  15911500          <-----------GT1          --------->ANAC46    ------>ZmHOX2a(2)              --------->ANAC58  <---------ARR11(3)               --------->ANAC58               ---------->DOF2  --------->ARR11(3)              --------->LBD16              <-----------HVH21          <----------DOF2 -------At4g35610           <---------ANAC58       <---------WRKY18(1)                   <---------ANAC58 -----HSFB2a(2)             <---------ANAC58      ----------->HVH21                  <---------MYB52(1) ---->HSFB2a(2)       <---------YAB1       --------->ZAT2 --------->ZAT14     <------ZmHOX2a(1)  ---- -------RAV1(2)      <-----------GT1       <---------ZAT2 <---------ZAT14--------->ALFIN1<---------ANAC58   agatgatcttattttccaaatattatccttgcttcccacgaaacaagctggtttgacctctgttctgtcaaagaggtggaggactctgtttgctttcagt  15911600                                                                                     <---------WOX13(1)                                                                 ------>ZmHOX2a(2)  <------------CBF                               --------->ZAT18                 --------->ARR14(2)  --------->ATHB12                               <---------ZAT18         <---------ZAT14    ---------->DOF2                               ------>NtERF2         --------->ZAT14    --------->YAB1                              <---------RAP2.6(2)    <---------ZAT14  --------->AtLEC2      <--------         <----------DOF2 ------>ZmHOX2a(1)      ---------->DOF2<---------ARR14(2) <-------TEIL ----->YAB1              <----------DOF2  ----------->GT1     <------ZmHOX2a(1)   <---------YAB1   catactcttgactttgacaactccatccttttgcgccctaaatgtcgttataaagagtactgtaggatcgacattcaaaagagtttcattgattttgtgg  15911700                                                                                               ------                                                                                     --------->WRKY38(1)                                                                                     <-------TEIL                        ------------>CBF                                            --------->DOF5.7(2)                     <------NtERF2                                   <---------ARR11(3)        <-----                     --------->At5g28300                     <---------YAB1       <---------ANAC58              <---------AtLEC2        --------->ARR11(3)   <---------ICU4         <---------ANAC46<--          <----------DOF2      ---------->DOF2            --------->ICU4     <---------ICU4<---------MYB52(1)         <---------ANAC58 <---------------AGL15    <----------DOF2   --------->ARR11(3)<---------At5g28300    <------------CBF----------->GT1   <---------ARR11(3)--------->YAB1    --------->YAB1  <-------GAMYB -ANAC46 <---------ANAC58 --------------->AGL15    <---------DAG2---------->DOF2  <---------ANAC58---   atagaacattggctttgcaaggcggtaacaatataaagaagttctcacttagactttttcataatgaaaaagataatcaacatgacgttcaccgttggat  15911800                                       --------->TGA2(2)                                      <-----------HVH21                                     --------->ANAC55(2)                                     --------->ANAC58                      <---------ANAC55(2)   <---                                     --------->ANAC46                      <---------ANAC55(1)   <---                                     --------->ANAC58                      <---------ANAC46      <---                                    <-------TEIL                           --------->ANAC55(2)   <---   --------->ANAC58                 ------->TEIL                           <---------ANAC58    ------   --------->ANAC58             <---------------AtSPL3                     <---------ANAC58   <------ --->ARR14(2)                 <-------TEIL --------->ARR14(2)           <---------MYB52(1)    ------- ----ARR14(2)                <----------DOF2   ----------->RAV1(1)     <-----------HVH21   <---------MYB52(1) -------ANAC55(2)          <---------ZAT2  <---------ARR14(2)          <-------GAMYB       --------->ICU4 ------>ANAC55(2)          --------->ZAT2 <---------CCA1(2) <---------TOE2(3)            ----------->GT1   atgtaacgcattggaacatggtgtctccgagcttcatgtacgtcatatccaacaaaaccattaagaaactctcggttacctgtttgaactgtcgttatta  15911900         ------>ZmHOX2a(1)         --------->HSFB2a(2)   <---------ZAT6                                                          --------->ARR14(2) ------YAB1                         <-----------RAV1(1)                    <---------ARR14(2) ------TOE2(3)                 --------->ANAC46                            ------->TEIL ------------AtSPL8     ----------->HVH21                      <---------YAB1             <---------ANAC46 ------------AtSPL3<---------AHL20(2)                         <---------ARR11(3)          <---------O2 --->YAB1--------->HSFC1(1)    --------->ANAC58               --------->ARR11(3)--------->ANAC46  <-- ---YAB1 <---------HSFB2a(2)   --------->ANAC58          <---------YAB1   <---------CCA1(2)    ------ -->ICU4 <---------HSFC1(1)  <---------ALFIN1      --------->MYB46(3) <---------ANAC46<-----------HVH21   tggtactgttcctagaaatatttcatttgacacaccgaatgttgttgatttcaactactctgattatcttcgtcgtgaatctccacaatgtcacttggat  15912000                                                               ------>ZmHOX2a(2)                                                              --------->GLK1(1)                                                              <------ZmHOX2a(2)                                                             <---------ARR14(2)                                                             <---------ARR11(3)                                                             --------->ARR14(2)                                                             --------->ARR11(3)            <-------TEIL                           --------->At4g35610  --------->ZAT18           <<<<<<<<<<<<<<<<<LFY                 <---------At4g35610 --------->ATHB12              ---      ---------->DOF2               <---------At4g35610      <-----------ARR10                <------ ---------GT1                       --------->At4g35610----------->HVH21<---------ZAT18   <---------ARR11(3) --->ARR14(2)                  <---------------------WRI1    <---------AGP1      <---------ICU4   ---   tcacttgccaaagctacattggaccttcatttcttcgaagatgacaagagagcagatgtgacagatctcatcagtgggctacataatgtcaagacccttc  15912100                                             <---------ICU4                               <---------ANAC46                                               <------                               <---------ANAC58                                     <---------ANAC58                               <---------ANAC58                                     <---------ANAC58                           <---------ANAC58  --------->YAB1                         <---------ANAC46 ------>ANAC55(2)          <---------ANAC58 <---------ATHB12                   --------->YAB1 <------ -----HVH21  <-----------RAV1(1)   <---------AtLEC2<---------TOE1(2)           --------->ATHB12 ------>ANAC46      <-----------HVH21     --------->WOX13(1)          <------ZmHOX2a(1)      <-------   acttaacttcttctactgtcgaggtcagtacttgtgtgtatggacaatcatctcatgttttggttaagaacaggacatcattcattgtgtgtgtttcagg  15912200                         -------->P                    --------->ZAT18                                                     <---------At4g35610         <---------At4g35610                                                  <------MYB46(1)         --------->At4g35610           -------->P                           <--------P  --------->At4g35610     <---------MYB52(1)  --------->MYB52(1)                               <---------HSFB2a(1)      <- <-----------GT1    <---------ZAT18   ------->GAMYB                 ---------->DOF2   <---------ANAC58 ---TOE2(3)        --------->ALFIN1  --------->MYB46(3)       ----------->GT1 <------MYB83   <------- ---TOE1(3)     --------->DAG2       <---------MYB111(2)     <---------HSFB2a(2)      <---------ANAC58 ----RAV1(2)  ---------->DOF2 <---------ZAT6                 --------->HSFB2a(2)---------->DOF2------   ttatttcggtatgctgcaaaggtggactaccagtgttcaacaacctcgttgatttagtattttctagtaaaaaagaaggttggaaagtgcttctgccact  15912300  Previous    Next  AGI:  At3g44175.1    Description:  transposable element gene. pseudogene, similar to putative reverse transcriptase, similar to reverse transcriptase, putative; blastp match of 28% identity and 4.2e-46 P-value to GP|20279456|gb|AAM18736.1|AC092548_14|AC092548 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)} Range:  from: 15909554    to: 15911314    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g44180.1    Description:  syntaxin-related family protein. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G44060.1) Range:  from: 15911782    to: 15912703    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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