Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               <---------ANAC46                       --------->ATHB12                       --------->ATHB51                       --------->AHL20(2)                      --------->bZIP60(2)                      <---------YAB1                           --------->ANAC58                   --------->AHL20(2)                          --------->O2                 ----------->GT1                               --------->ANAC46               ---------->DOF2                                 --------->ANAC58                 -----          --------------->AGL15                                ======================================     --------->ARR14(2)<---------AHL20(2)                      --------->TGA1a                <------     <---------ARR14(2)<---------ICU4                        --------->ANAC46            <---------AHL20(1)    --------->WOX13(1)--------->ICU4                       ==============MYC_MYB         --------->AHL20(1) ---->DOF2<---------------AGL15                            ------->GAMYB                 <---------AHL20(2) -TOE2(3)----------------->AGL3                           --------->MYB46(3)            --------->AHL20(2) >DOF2   ----------------->AGL2  <---------AHL20(2)     <-----------GT1               <---------ARR11(3)   agttgccaatccccattaaaagtaattatttgtgtataattttgtttatagagttttttaaccacacgacactatcaacttagaacaagattatatttta  15814600                                                                                          <----------                                                                                    <---------ANAC58                                                                                    <---------ANAC46                                                                                    <---------ANAC58                                  ---------->DOF2                                   --------->ANAC55(2)       --------->CCA1(2)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------AHL20(2)------->TEIL ----->DOF2               <----------DOF2                       <----------DOF2     <---------ANAC55(2) ======bZIP_DOF         --------->LBD16                  --------->ARR11(3)         <---------ANAC55(1) ---AHL20(2)          <---------LBD16      <---------WOX13(1)------>ZmHOX2a(1)     <-------TEIL   ---   aagaaatggatatagaattcatattccggtttatgtgaaagcctgattaatccattgaacatcctgcttttatttttttgtaatatacgtgtatgttgca  15814700                                                                    <-----------RAV1(1)                                                                   ------->TEIL                                                               ------->MYC2                                                               <-------MYC4                                                               ------->MYC4                                                               <-------MYC3                                                               <-------MYC2                                                               ------->MYC3                                                              --------->O2                                                              <---------TGA1a                                                              <---------O2                       <---                                                         --------->ARR14(2) <-------TEIL     <-------MYC3      --------->At4g35610 ----------->ARR10        <---------At4g35610   <---------ANAC58    ------->MYC3 -RAV1(1)        <-----------GT1                   --------->At4g35610   <---------ANAC58   <xxxxxxxx -------->GT1 ----------->GT1              ----------->GT1    --------->TGA1a            <-------TEIL   tagtaattagcttagtttgtaactagcttagtttctcaactagtttagtaattagctcatatacacgtgtatgttgcatacatgtttaatatacatgtgt  15814800                           <--------ATHB1                                                --------->ARR11(3)                           --------->ATHB12                ----------->GT1               <---------AHL20(1)                          <---------ATHB12              <---------MYB46(3)          --------->AHL20(2)                  --------->AHL20(2)                 --------->ALFIN1         <---------YAB1     <---   --------->TOE2(3)      --------->ICU4       <---------AHL20(2)        ----------->GT1 --------->AHL20(1) --------GT1      <---------AHL20(2)      <---------AHL20(2)            --------->DAG2  --------->AHL20(2) xxxxxxxxxxxxxxxsmallRNA(si3)  --------->AHL20(2)---------->DOF2       ---------->DOF2--------->AHL20(2)   aactagcttaatttgtcaaataaaatcaatgatttatatcgtattttatataaaagtgttgttgtaatatgtataaagttataaaaaaaaatatatagat  15814900                                      <-----------GT1                                  <---------AHL20(2)                                  --------->AHL20(2)                                 <---------AHL20(1)                                 --------->AHL20(2)                                 <---------AHL20(2)                              <--------ATHB1                              --------->ATHB51                              <---------ICU4                              --------->AHL20(2)                              <---------AHL20(2)                             <---------YAB1                                                   -------                           --------->YAB1                                                    <-------                          <---------AHL20(2)                                               ----------                         --------->AHL20(2)                                                --------->ETT(2)                      --------->CCA1(2)                                                    <---------DEAR3(1)                     <---------ARR11(3)                         <------------CBF           --------->DEAR3(1)                <---------ANAC46 --------->AHL20(1)           --------->AHL20(2)<---------ANAC58     ---------->DOF2 --------->ARR11(3)                       <---------AHL20(2)<---------ANAC58 ----TEIL    --------->ANAC46--------->ICU4        <------------CBF             *TSS   <---------ATHB12   gcaagactaaagtacaagacgtagatatataataatttattttctaatttagaaattgttggattttattgaatgtagaatggcttccaatcgtcgacgg  15815000                                                                                                  <--                                                                                                  ---                                                                                                -----                                                                                                <----                                                                                              <------                                                                                              -------                                                                                       <---------YAB1                                                                                  <---------AHL20(2)                                                                                 --------->AHL20(1)                           <---------At4g35610                                   --------->AHL20(2) -                        <-------TEIL                                             <---------AHL20(2) <                 --------->MYB52(1)                                         <--------P--------->AHL20(2)           --------->HSFC1(1)                           ------>ZmHOX2a(1) ----------->GT1   --------- -->ANAC46 <---------HSFC1(1)                        ------>ZmHOX2a(1)   ----------->GT1 <---------AHL20(2) --LBD16   --------->HSFB2a(2)                 <-----------GT1          <---------ANAC55(2) <-------- ->HVH21   <---------HSFB2a(2)                <-----------GT1           <---------ANAC46--------->AHL20(2)   agcacaaacccttctagacgaacagattcaactcatcccactaaaattttaactcctcctacaaaaacaacaatacgggtaaatttaatattatatatat  15815100             <---------AHL20(1)        <---------AHL20(2)        --------->AHL20(2)      --------->AHL20(2)      <---------AHL20(2)    --------->AHL20(2)    <---------AHL20(2)  <---------AHL20(2)  --------->AHL20(2) -------AHL20(2) ------>AHL20(2) ---->AHL20(2) -----AHL20(2)                                                                                    --- ---AHL20(2) --------->AHL20(1)                              --------->ANAC58                     <-- -->AHL20(2)<---------AHL20(2)     <---------YAB1            --------->ANAC46                 ------- -------->AHL20(2)       <---------AHL20(2)     <-----------GT1                    --------->ANAC58 ---------AHL20(2)<---------AHL20(2)       --------->AHL20(2)--------->ANAC55(2)   --------->ANAC58 >AHL20(2)--------->AHL20(2)--------------->AGL15            --------->ANAC58 <----------ID1  ------- -AHL20(2)<---------AHL20(2)<---------------AGL15          <-----------GT1  ---------->DOF2   <------   atatatatatatatatatattaaaaatttacttaaatttgatagaataaataacattgtattcacgaaatatgtagaataaagacaagtacaaatggacg  15815200                                                      --------->YAB1                                                     <---------YAB1     ----------->GT1                               <--------HAHB4    ----------->GT1                               --------->ICU4  <-------TEIL                                    --------->AHL20(2)   ------>ZmHOX2a(1)       ------ ---->TEIL                                    --------->ICU4 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -----TEIL    --------->TOE2(3)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      xxxxxxxxxxxxxxxxxxx -------->AtSPL3                   --------->ANAC58--------->YAB1  <---------ARR14(2)      --------->ARR14(2) >TEIL<------ZmHOX2a(1)         --------->ANAC46--------->YAB1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ---------AtSPL8--------->AHL20(2) --------->ANAC58<---------ICU4  --------->GLK1(2)       <---------ARR14(2)   tacatacaggaaaaaacattaattcaattgttcgacgaagcaattgccatgaataattatactctcaagaatcctactgctatcggtagagagtatatgg  15815300                                     <---------TOE1(3)                                             --                                 <---------ANAC58                                                  --                                 <---------ANAC58                                   --------->CCA1(2)                                 <---------ANAC55(2)                      ----------->GT1    -------- ----->GT1                  <---------ICU4                               --------->DAG2      <------- xxxx>smallRNA(si3)        ------->TEIL                                 ---------->DOF2  ---------->DOF2   ttgaaaatttcaatatagcattcaacatgaatattacttatggttttttcaaaaacaaacttgatgaattcaaaaaaagttacaagagatggaaagctct  15815400                                                      --------->ANAC58          --------->ANAC58                          --------->MYB52(1)          --------->ANAC58                        <---------MYB52(2)   --------->ANAC58        ------>ZmHOX2a(1)     --------->At4g35610   --------->ANAC58      ------>ZmHOX2a(2)       <---------At4g35610   --------->ANAC46  <---------MYB46(3)         ------->TEIL ------->ANAC58    <-------GAMYB              <-------TEIL    --------->ETT(2) ------->ANAC58    --------->At5g28300    <---------ICU4      --------->ZAT18        <-------TEIL ->ARR11(3)    --------->MYB52(1)      --------->YAB1 --------->ANAC58           --------------->AtSPL8 --ARR11(3)   ----------->HVH21     <----------DOF2----------->HVH21             <---------------AtSPL8   tacgcacaaaacaggcatcacggttgatcctaatacatctttcataaatgcatctaacgcatggtggacagaacaagagtttgtaagtacatcaaatatt  15815500  Previous    Next  AGI:  At3g44030.1    Description:  pseudogene, similar to OSJNBb0043H09.1, blastp match of 40% identity and 8.4e-38 P-value to GP|21740634|emb|CAD40195.1||AL606611 OSJNBb0043H09.1 {Oryza sativa (japonica cultivar-group)} Range:  from: 15814980    to: 15817935    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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