Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         <---------ICU4                                                      <---------YAB1                                                    --------->TOE2(3)         --------->At4g35610                        --------->YAB1    --------->YAB1                                --------->GLK1(2)   <---------YAB1                        ---------->DOF2                                            - ---------YAB1                     <---------ICU4 <-----------ARR10                                 - -------ICU4                      --------->ICU4  <---------ARR11(3)   --------->ANAC46         ----- ------>YAB1                  <---------------------WRI1 <---------WOX13(1)                  <------- ------ATHB12             --------->GLK1(2)      <---------GLK1(2)   --------->ZAT6          <-------   tcactataatcagctatacacatacaagaatttgcaaaaattacaaagtcagaatcttaattgccatattaacacaaaactaatctcacatagttaagat  15811800          --------->YAB1 -------->ANAC58 -------->ANAC58                          ---------->DOF2 ---->CCA1(2)                             --------->YAB1                    --------->GLK1(2) --TOE2(3)<-----------GT1              <---------------AGL15               <---------GLK1(2) --YAB1--------->YAB1                  --------------->AGL15       ---------->DOF2              <----   agaagccaagtataacaatctcatacaaatactaatctctacaataaagagaagaattgacaaactatacaaagtcagaatctaaaattgccaaaatata  15811900                                                           <-------TEIL                   --------->ANAC55(1)                   --------->ARR14(2)                  ------->MYC3                       <------ZmHOX2a(2)  --------->ANAC58                  <-------MYC3            <---------YAB1 --------->AGP1 --------->ANAC58      <-----------ARR10                  --------->TOE2(3)<------ZmHOX2a(2)     <---------CCA1(2)                  --------->YAB1   <---------ARR14(2) -------GT1 <---------ATHB12           <---------ATHB12 --------->At4g35610              <---------ARR11(3)   acaacacatatctaatcacacatgtaacaacaaatacacaaatcatcaatagacgatcagatccattagagaacaaggaaatggtgttcaagttctatac  15812000                                                                            --------->SPL7                                                                        --------------->AtSPL8                                                                      <------ZmHOX2a(1)                                                                    --------->LBD16                                                                   <---------HSFB2a(2)                                                                 --------->CCA1(2)                                                                 <------ZmHOX2a(2)                                                                <---------ARR14(2)                   --------->ANAC58                   --------->TOE2(3) --------------->AtSPL3                   --------->ANAC58             <---------YAB1  --------->ARR14(2)                 ---------->DOF2             <---------YAB1     --------->AGP1               <---------ATHB12              --------->ICU4     <---------ARR11(3)         ------>MYB83                      <---------At4g35610  --------->ARR11(3)         ------>MYB46(1)                <------ZmHOX2a(1)      --------->GLK1(1)  <---------LBD16       <---------MYB59             --------->ALFIN1<-----------GT1 --------->HSFB2a(2)     ------------------------>ANAC81    ================================HOX2a_HOX2a         ---------   ttctaagaaccaaacaaatcaaagcaaaacgcgagaggtagaggaagatgattataccataaacgagatccaggaccgtacttcttcggatgagagttcc  15812100                                                     --------->O2                                                     <---------TGA1a                                                     --------->TGA1a                                                     <---------O2                                                    <------NtERF2                                                   ------>NtERF2                                             --------->MYB52(1)                       <---------ARR14(2)  <---------MYB52(2)                       --------->ARR14(2)  --------->MYB46(3)        ----------->HVH21  --------->At4g35610    --------->DEAR3(1)                     --------->ICU4 --------->TOE2(3)  <---------------------WRI1    <---------DEAR3(1)                   *TSS  -------- >GLK1(1)         <---------ANAC46   <------ZmHOX2a(1)         <xxxxxxxxxxxxxxxxsmallRNA(i) ---------   atacattagagtgacccatttcgtcgatttgctcacagaggaataacaaacggcgacgagagagactcttcaaaaccctagaaatttagtcacgatgatg  15812200                                                                             <-----------------------                                                                            <----------DOF2                                                                        --------->ARR14(2)            --------->YAB1                                              <---------ARR14(2)  <---------At4g35610                                            <---------WOX13(1)  --------->ZAT2  <---------------AtSPL8                        <------------CBF  --------->At4g35610 ------------>CBF                         --------->ATHB12 --------->GLK1(2)--------------->AtSPL8                      --------->AHL20(2)                    - ->YAB1    <---------YAB1                           ---------->DOF2     <---------GLK1(2)<----------DOF2 >ICU4    <-----------TBP       <-----------------AGL1        <---------AHL20(2)      <-----------GT1   aagaagctgagtttttataactagtacaatttttatctaaatgggccatatttctaaaggcccattaattggtggattcttttttttttttctttcttct  15812300                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            ------>ZmHOX2a(1)                           --------->TOE2(3)                           --------->TOE1(3)                         <---------YAB1                        --------->ARR11(3)               <---------ANAC58      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               <---------ANAC58  <---------DAG2     ------->MYC3       <---------ARR11(3)     <-------MYC3    <---------WOX13(1)                      <---------ARR14(2)     <---------CCA1(2) -ANAC81   <----------DOF2------>ZmHOX2a(2)                *TSS           --------->ETT(2) -------->AtLEC2<----------DOF2  <----------DOF2        <---------ANAC46  <---------ETT(2)         <-   ccatccacatgttctttgctttgaatgatccttagcttttttttttttttttttttttgagtgaatccatggccagtcgacctctcatctctctgcaact  15812400                                                                                           --------->TOE1(3)                                                                              --------->MYB46(3)                                                                             ------>NtERF2 --------->TOE2(3)                                                                            --------->RAP2.6(2)                                    ----------->RAV1(1)                     --------->ANAC46---------                                  ------>MYB46(1)             --------->TOE2(3)<---------ALFIN1                                  ------>MYB83                --------->TOE1(3)--------->AtMYB61          <<<<<<<<<TBF1          ----------->RAV1(1)         ===============================RAV       <<<<<<<<<TBF1           --------->MYB46(3)            ----------->RAV1(2)----------->RAV1(1)    <<<<<<<<<TBF1     ------>ZmHOX2a(1)             <----------DOF2 --------->ICU4         ---------- ---------DOF2  <---------At4g35610--------->MYB46(3)  --------->YAB1      --------->MYB46(3)   tctttcttcttcttcttcatcttcctcgttaaaaccaacaacaaaacttctcttctttcataaacctgaactaattagccaccaccatagaaaccgtaac  15812500                                                                                              <------                                                                                            <--------                                                                                           <------ZmHOX2a(1)                                                                                      <---------AtMYB61                                                                                      --------->ALFIN1                                                                                     <-------GAMYB                                                                                     <------NtERF2                                         <---------ICU4                              --------->ATERF1(1)                                        <---------YAB1                              <---------MYB46(3)                                  <-----------ARR10                                <---------ANAC46      <---------ANAC55(2)     <---------ZAT2                                       <---------DEAR3(1)      --------->ANAC58        --------->At4g35610                                  <---------RAP2.6(2)     <---------LBD16          <---------At4g35610                       <---------ZAT18<---------MYB46(3)  <-----------HVH21       --------->ANAC46   <-----------GT1    ------>ZmHOX2a(1)  <---------DREB2C(2) >At5g28300   <---------ZAT6 XXXXXXXXXXXXXXXXXXX>MIR3434       --------->TOE2(3)<---------DEAR3(1) ->GT1--------->ANAC58  --------->ZAT6  <---------ATHB12  <----------DOF2 --------->DEAR3(1)---------   aagttgtcacggacaagtgttcatcaacactcagctaatctcatcattcacccttctgttcttttcctaagtagcgccttcgatggcggtggaggattca  15812600                                                                                    <---------ICU4                                                                                    -------->ATHB1                                                                                    --------->YAB1                                                                                   --------->ICU4                        <---------MYB52(1)                           <---------TOE2(3)                     <---------YAB1                                  <---------TOE1(3)<---------YAB1 -TEIL             <-----------GT1                               <----------DOF2   <---------ATHB12 -ARR14(2)  <---------YAB1                                  ------>ZmHOX2a(1)      <---------ATHB51 >ARR14(2)<----------DOF2         <---------REM1(1)         <---------LBD16      --------->WOX13(1)   tcgatacacagacttttattgtcaccattagtctcgttgtagccattgctctctcactattcctcggcttcaaggttttgtatcaattattcttctctac  15812700  Previous    Next  AGI:  At3g44010.1    Description:  40S ribosomal protein S29 (RPS29B). Identical to 40S ribosomal protein S29 (RPS29C) [Arabidopsis Thaliana] (GB:Q680P8;GB:Q9LDT9); similar to 40S ribosomal protein S29 (RPS29A) [Arabidopsis thaliana] (TAIR:AT3G43980.1); similar to 40S ribosomal protein S29 (RPS29C) [Arabidopsis thaliana] (TAIR:AT4G33865.1); similar to Os11g0634500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068325.1); similar to unknown [Populus trichocarpa] (GB:ABK93131.1); contains InterPro domain Ribosomal protein S14; (InterPro:IPR001209) Range:  from: 15810918    to: 15812187    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g44020.1    Description:  thylakoid lumenal P17.1 protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO67420.1); contains InterPro domain Heat shock protein DnaJ, cysteine-rich region; (InterPro:IPR001305) Range:  from: 15812359    to: 15813717    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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