Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     --------->ZAT6                                        --------->At4g35610                                         -    --------->YAB1                      ----------->GT1                                             -    --------->ANAC55(2)    ----------->GT1    --------->YAB1                              --------->ZAT14    --------->ANAC46--------->TOE2(3)  --------->ANAC58  --------->TOE2(3)      --------->TOE2(3)  -- ------At4g35610 --------->WOX13(1)    --------->ANAC58  --------->YAB1      --------->WOX13(1)    --   tctcatacataacataagtcaatctcaaatggtgaagacataagctaaatataacacaaacttaatttcagacataagtcaatctcaaatagtgaagaca  15789900                                                                                                    <                                                                                                  ---                                                                                                 <---           --------->ZAT6                                                                     <------      --------->YAB1                           ----------->GT1                              --------- -------->At4g35610              --------->ANAC46           --------->At4g35610            <---------ATHB12 ---------->GT1                  --------->ANAC58          --------->ANAC58          --------->ANAC58 ------->ANAC58  --------->TOE2(3)            --------->ALFIN1 --------------->AtSPL8--------->ANAC58 ------->ANAC58  --------->YAB1  --------->ANAC58          --------->ANAC58<-----------HVH21<--------   taagctaaatataacacaaacttaatttcagacataagccaatctcaagtggtgaagacataagctaagtacaacaatgtcagacataagctaatcacta  15790000                                    <---------ANAC55(2)    ----------->HVH21               --------->ANAC55(2) ---------YAB1         ----------------------->TaNAC69(2) ------>YAB1        --------->GLK1(2) ------YAB1   <-------TEIL          --------->ANAC55(1)                            --------->ANAC46 ---YAB1     --------->CCA1(2)      --------->ANAC46                               --------->ANAC58 >YAB1      <---------ARR14(2) <-----------GT1                            ---------->DOF2 -ICU4      --------->ARR14(2)--------->AHL20(2)                <-----------HVH21  --------->ANAC58   taatcagtgacacagatacaagaatttgcaaatttaacacataactaatctcattcacatagctaatgtcacattgtaaagacataagccaaaaacaaca  15790100                                                                               --------->SPL7                                                                           --------------->AtSPL8                                                                         <------ZmHOX2a(1)                                                                       --------->LBD16                                                                      <---------HSFB2a(2)                                                                    <------ZmHOX2a(2)                                                                    --------->CCA1(2)                                                                   <---------ARR14(2)                                                         --------->TOE2(3) --------------->AtSPL3                       --------->MYB52(1)             <-----------GT1 --------->HSFB2a(2)                     <----------DOF2            --------->ICU4     <---------ARR11(3)                <---------ANAC58           <------ZmHOX2a(1)       --------->AGP1                <---------ANAC58           ================================HOX2a_HOX2a             --         <---------AHL20(1)          <---------ZAT6<---------YAB1  --------->ARR14(2)              <-         --------->AHL20(2)    --------->DAG2   <---------YAB1     --------->ARR11(3)          ------         <---------AHL20(2)   ---------->DOF2 <---------At4g35610 --------->GLK1(1)  <---------LBD16   atctcatacaaaaaatttgagtgcttaagggcaaaagtagagtgaggaagatgattataccataaacgagatccaggaccgtacttcttcggatgagagt  15790200                                                        --------->TGA1a                                                        <---------TGA1a                                                        <---------O2                                                        --------->O2                                                       <------NtERF2                          --------->ARR14(2)          ------>NtERF2           ----------->HVH21  --------->At4g35610    <---------DEAR3(1) ------->HSFB2a(2)        <---------ARR14(2)    --------->MYB52(1) --------HSFB2a(2)     <---------------------WRI1    --------->DEAR3(1)                            <- --->GLK1(1)           ---------->ID1   <------ZmHOX2a(1)       <xxxxxxxxxxxxxxxxsmallRNA(i)      *TSS   tccagacattagagtgacccattttgtcgatttgctcacagaggaattacaaacggcgacgagagactcttcaaaaccctagaaatattagtctcgttgg  15790300                           --------->AHL20(2)                     <---------At4g35610                     --------->At4g35610                     <---------LBD16                    ------->GAMYB<---------TOE2(3)            <---------AHL20(2)  ---------->DOF2              <------MYB83              <------------CBF           --------->AHL20(2) <---------YAB1           ------->GAMYB                ----------->RAV1(1)        <---------AHL20(2) --------->ICU4           --------->MYB52(1) ----------------->AGL3       --------->AHL20(2)--------->ARR14(2)     --------->ZAT6         ==============================       <---------AHL20(2)<---------ARR14(2)   --------->YAB1 <------MYB46(1)--------->YAB1       ---- -----ZmHOX2a(1)   --------->MYB46(3)       --------->AHL20(2)  <---------REM1(1)   <---------ALFIN1   aggagaagattaattttatcaacagcggatttattaaagaaaacaaaataatactaacgggctaggttgtaggcccattaatagcccaacattggcctcc  15790400                                                       --------->ALFIN1                                                    --------->DAG2                                                   ---------->DOF2         <---------------AGL15                   <---------TOE2(3)         --------------->AGL15            <---------------AGL15        ----------------->AG              --------------->AGL15       <---------DAG2        ==================================================MADS_MADS   <----------DOF2        ----------------->AGL3       <---------ANAC55(2)           <-----------GT1   <---------AHL20(2)                --------->ANAC55(2)    ----------->GT1             <---------ANAC55(2) =========================MADS_MADS --------------->AtSPL8<---------ANAC46   ------>ZmHOX2a(1)     -- -->ZmHOX2a(1)               --------->ANAC55(2) <---------YAB1    <---------AHL20(2)<---------MYB52(1)   tattttttattccaaaataagcagataagacatgtgattaagtacttgattaagaaagtggagcgtaatttactttatcctttcttcgttacataaacca  15790500                    --------->YAB1               <---------TOE2(3)                                 xx                  <---------WOX13(1)          <---------AHL20(2)                       --------->ARR11(3)   <---------ARR11(3)                     --------->YAB1                    ---------->DOF2    <xxxxx ------->YAB1  <---------YAB1            <-------TEIL      <---------AHL20(2)      --------->ANAC55(2)   ttgattatctctgtaatctcattgataattttgtatacactgattcatattaatgaagtattttttagatgaaaaaaaaaaagacatgtgatattgttaa  15790600                                          <---------ARR11(3)                                          --------->ARR11(3)                                          <---------AHL20(1)                                          --------->AHL20(1)                                       --------->AHL20(2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                            <-----------GT1   <---------ARR11(3)            ----------->GT1                        --------->YAB1              < xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->AHL20(2)  --------->At4g35610              --------->ZAT6 xxxxxxxxxxxxxxxxxsmallRNA(se3)----------->GT1           <---------At4g35610       <<<<<<<<<TBF1    <   gtcaagttctctcaatgggttctctcaacaaaatcgtgaaaaaatatatcaaaaacgacagcggtctctcttaataacaaaattcttcttcaactctact  15790700                                                                                   <---------AHL20(2)                                                                                  <---------AHL20(2)                                                                                  --------->AHL20(2)                                                                   <---------------AGL15   <---------WOX13(1)                                              --------------->AGL15        <---- --------->ATHB51                                                 ----------------->AGL3  <xxxxxxxxxx ---------YAB1                   <-----------GT1           --------->TOE2(3)      <---------AHL20(1) ---------AHL20(2)   --------->GLK1(1)       ---------->DOF2      <-----------------AGL2<-----------GT1   ctataattgactcaaaaatagagatttctacatattgactctatacatagagcaactctattctcaattctatttttagttcaatttttttttctatact  15790800  Previous    Next  AGI:  At3g43980.1    Description:  40S ribosomal protein S29 (RPS29A). Identical to 40S ribosomal protein S29 (RPS29C) [Arabidopsis Thaliana] (GB:Q680P8;GB:Q9LDT9); similar to 40S ribosomal protein S29 (RPS29B) [Arabidopsis thaliana] (TAIR:AT3G44010.1); similar to 40S ribosomal protein S29 (RPS29C) [Arabidopsis thaliana] (TAIR:AT4G33865.1); similar to Os11g0634500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068325.1); similar to unknown [Populus trichocarpa] (GB:ABK93131.1); contains InterPro domain Ribosomal protein S14; (InterPro:IPR001209) Range:  from: 15789389    to: 15790298    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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