Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    -                                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          --------->At4g35610                                --------->ANAC58                    ----          <---------At4g35610                                --------->ANAC46             xxxxxxxxxxx      <-----------HVH21                                      --------->ANAC58       <xxxxxxxxxxxxxxxx --------->YAB1                                             <---------LBD16xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---------TOE2(3)                                     <-----------------AGL1  <---------ANAC46   <--- ---------YAB1                      <----------DOF2   ----------------->AGL1  ----------->GT1    <--- -->ARR11(3)                <-----------GT1       <---------ICU4     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ---ARR11(3)  <---------ALFIN1  <----------DOF2  <---------ATHB12    <-------TEIL <---------AHL20(2)-   ttaacataagtcagcccctcttctacatttttagctttcttttagtcgaaaatcattccaaactcggaacatacattgtggtgtttatttgggaagaagt  15764100             --------------->AtSPL8    ---------->DOF2 -------->ANAC58 -------->ANAC58                     --------->LBD16 ----->ZAT18 <---------------AtSPL8  ----------->GT1         <---------ANAC58 xxxxxxxxxxxx>smallRNA(se3)         --------->LBD16          <---------ANAC58                 ------- xxxxxxxsmallRNA(si3)         <---------GLK1(2)  ---------->DOF2                     <xxxxxxxxxxxxxxx ------ZAT18<xxxxxxxxxxxxxxxxxsmallRNA(le3)  --------->AHL20(2)              --------->ZAT2  -------- ------WRKY38(1)         -------->P<---------LBD16--------->DAG2             --------->At4g35610    < -------->ANAC46        <-----------GT1     --------->AHL20(2)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ccacgctaaagtattttagtacatttctaccagattacccggataaataaaaaaagcgaagttacttacaacatgaaacagcttgcacattgaagaaaag  15764200             --------->GLK1(1)       <---------At4g35610       --------->At4g35610                    <---------MYB52(1)     --------->YAB1                          <------------CBF    <---------ATHB12                    --------->At4g35610  --------->WOX13(1)                    <---------At4g35610 -->DAG2     <---------CCA1(2)         --------->MYB59 xxxxxxxsmallRNA(i2)   ------->TEIL    >>>>>>>GRF7                             ----------->GT1 ------ -->DOF2    --------->ARR14(2) ------->TEIL<-------TEIL                    ---------->DOF2    ------- ---------ATHB12    <---------ATHB12<-----------HVH21             <---------AHL20(2)       --------->YAB1   taatcaatcagcagtatatccaatgaatctatgcatcttgtcaggtccattgggccttagaggcctaaatatttgaagaaagagtaaaatcaaaaataaa  15764300        --------->DAG2   <---------YAB1      ---------->DOF2   --------->AHL20(2) ----------->GT1       <---------AHL20(2)                                                        ---- --->DAG2              --------->AHL20(2)                 <-----------GT1                        <--- --->DOF2             --------->AHL20(2)   <-----------RAV1(1)----------->GT1                 -------   gtatcgaaaaaaggtaacccaaaaattaatatagtttgactaattttgttgcagtttttttttctagttaaaaattcaacattcgaaactcatgttctga  15764400                                     <----------ID1                                 ---------->DOF2                           <---------ZAT14          <---------DAG2                           <---------ZAT18          <----------DOF2 ----->bZIP60(1)           --------->ZAT14         <---------DAG2 ------bZIP60(1)     <-----------HVH21          <-----------GT1     ---------->DOF2 ---->HVH21         <---------MYB46(3)   ---------->DOF2         --------->TOE2(3)       ------>ZmHOX2a(1)   cctcatttatacacttgcccagtggtcagtgcagaaaaagagaaaaagaatcacctttttgttttaatctcaaagtcgaaattcgaaattcctctactct  15764500                                                                            --------->ANAC58                                                                            --------->ANAC58                                                    <------NtERF2      <------NtERF2                   <-----------GT1                 ----------->GT1    <---------MYB46(3)               <----------DOF2                     --------->LBD16 <------MYB46(1)         --------->ALFIN1   <-----------HVH21    <------NtERF2     <---------ZAT2        --------------->AtSPL8  --------->AtLEC2 <---------LBD16   <------MYB83     <---------ANAC55(1)  --------->SPL7  <-------GAMYB           <---------AtMYB61             -----     <---------ANAC46    <---------MYB52(1)      --------->ATERF1(1) --------->ALFIN1          <-----  <---------MYB52(1)<-----------GT1      <---------MYB46(3)     <------ZmHOX2a(1)              ------   tcccgttaagtgtgttcctttttatccgttcgtcatgcattcgtcgttggagccggagaaaatggaggaaggtgggggaagcaattcgcttaagagaaaa  15764600                            <---------GLK1(2)            --------------->AGL15                          <---------YAB1                 <---------------AGL15                      --------->ARR14(3)                <-----------------AGL1                      <---------ARR11(3)                --------->ZAT6                      <---------ARR14(3)            <---------WOX13(1)                      --------->GLK1(2)          <---------YAB1                      --------->ARR11(3)       --------->YAB1                 ==================================HOX2a_HOX2a                       --------------->AtSPL8 ---->KAN4(2)    <------ZmHOX2a(2)            <---------YAB1                    ------>ZmHOX2a(1) ----HSFB2a(1)  <---------ARR11(3)            <---------ATHB12            --------->At4g35610 --->HSFB2a(1)  --------->ARR11(3)          ------>ZmHOX2a(1)        --------->YAB1 <----------DOF2   ttctctgaaatcgatggagatcaaaatcttgattctgtctcttctcctatgatgactgactctaatgggtatcatcatcttcctctctttgtacttgatt  15764700                                                                                  ===================                                                                              <--------P                                      <---------DAG2                     <---------TOE2(1)       ----                                      <----------DOF2                 --------->ZAT18            <---                              <---------TOE2(3)                     <---------------AtSPL8       ----                             ---------->DOF2                     ---------->DOF2  --------------->AGL15                         --------->ZAT6                   <---------YAB1 <---------TOE1(1)      <----                    <----------DOF2<-----------GT1     --------->ICU4 --------->ZAT14      <------ZmHOX2a(1)   ttgggtcttatgggtttttagtctttttcactaaagtttactttttttttggcagtagttatgaattgaaagtgtacgaggttgctaagaacaggaacat  15764800        <---------ANAC46   --------------->AGL15   <---------------AGL15           <------ZmHOX2a(2)  <-----------------AGL2          --------->ARR11(3) ==================MADS_MADS      <---------ARR11(3)     --------->CCA1(2)                      <---- ----->ATHB12              <-----------HVH21        ---------->DOF2                             <---- ------ICU4           --------->YAB1          <---------ANAC58                         --------->YAB1 ----->ATHB51       <---------WOX13(1)        <---------ANAC58       <---------YAB1  <---------WOX13(1) -----YAB1 ----------->HVH21     --------->GLK1(1)<---------YAB1   <---------At4g35610----------->GT1   aattgctgttttggggacagggattgataagtcagagatcactaagaggcttatcaaagctatgggttcttctgatacagacaaaagattgataattttc  15764900             --------->GLK1(2)             --------->ARR14(2)             ------->TEIL         --------->At5g28300                                                            <---------At4g35610       <------------AtMYB77   --------->ANAC58                                  <--------HAHB4      --------->ZAT2      --------->ANAC58          <----------ID1              <---------ICU4      <---------ZAT2      --------->ANAC58          ----------->GT1             --------->YAB1    <---------ALFIN1      --------->ANAC46   ----------->GT1                   <---------ATHB12   <------NtERF2 ----------->GT1           >>>>>>>>>ARR2                     <-----------GT1 -----ANAC58 <---------ARR14(2)           --------->ATHB12                 --------->AHL20(2) -----ANAC58<---------CCA1(2) --------->ANAC58    ---------->DOF2          <---------AHL20(2)   <----   ttggccccaactgtgaatcttgttaaacaggcaagtctcttgtttgattgtaaaaagaaaaactgtttcatttggattttaatcattttgagttgatgat  15765000  Previous    Next  AGI:  At3g43920.1    Description:  DCL3 (DICER-LIKE 3); RNA binding / ribonuclease III. similar to DCL1 (DICER-LIKE1), ATP-dependent helicase/ ribonuclease III [Arabidopsis thaliana] (TAIR:AT1G01040.1); similar to hypothetical protein OsJ_004388 [Oryza sativa (japonica cultivar-group)] (GB:EAZ14563.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43908.1); similar to hypothetical protein OsI_004750 [Oryza sativa (indica cultivar-group)] (GB:EAY76903.1); contains InterPro domain Argonaute and Dicer protein, PAZ (InterPro:IPR003100); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase Range:  from: 15764535    to: 15771817    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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