Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                --------->ANAC58              --------->ANAC58              --------->ANAC46         <---------YAB1                              <---------ANAC58      --------->ICU4  <---------ANAC58               <---------ANAC58    ---------->DOF2   <---------ANAC46             <-----------GT1   --------->AHL20(2) <---------ANAC58         <----------DOF2     <<<<<<<<<TBF1              -------   tacaaataaagattataggcaacttcgtgtaatgtctaatcccaatttcctttttacttgaatagcttcttcttcaaataagcttcaagcttactccaac  15661600                                                     ------>ZmHOX2a(2)                                                    --------->GLK1(1)                                 --------->ARR11(3) <---------GLK1(1)                                 <---------ARR11(3) <------ZmHOX2a(2)                           <----          <---------TOE2(3)   ------->GAMYB        <---------ARR11(3)                         -------          <---------TOE1(3)  --------->MYB46(3)    --------->ARR11(3)<----------DOF2   <----------DOF2      <----------DOF2      <-----------GT1   --------->YAB1    <----------DOF2      --------->ARR11(3) ---->RAV1(1)         --------->ICU4     --------->ZAT6    <---------CCA1(2)        <---------ARR11(3)   attctcccctttaagcttgaagccatatttaaccacatcttgaacactaatgagatctctcatctctttgactttcattcttccaagagctttagttagg  15661700                                <---------ALFIN1                     --------->LBD16                    --------->LBD16                    --------->ANAC46                    <---------HSFB2a(2)                    --------->HSFB2a(2)                --------->ANAC58                --------->ARR14(2) --------->ETT(2)  <---------LBD16 --------->AtMYB61   --------->ANAC58          --------->At5g28300 <---------ETT(2)  <---------HSFB2a(2)      ---------->ID1                      ----------->GT1    <- --ZmHOX2a(1)      --------->HSFB2a(2)<---------ALFIN1---------->ID1       ---------->DOF2         -- -->MYB59         <---------LBD16  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<----------DOF2<---------ARR14(2)   atgtctaccttcttctcatttcccggaatatggtccacctccacttgtccatttttgacgcattctccgattgtcttttaagcggtgaaaatccactaga  15661800                                                            <------NtERF2                                                       <---------ANAC46                                                       <---------DEAR3(1)                                                      <---------LBD16                                                      <------NtERF2                                                      --------->ATERF1(1)                                                     <---------RAP2.3(1)                                                     <---------ORA47(2)                                                    <---------RAP2.3(3)                                                    <---------DEAR3(1)                                              --------->MYB55(2)                                              <---------MYB46(3)                                        --------->GLK1(2) <---------DEAR3(1)                                       <---------GLK1(2)<---------ATERF1(1)             ------>ZmHOX2a(1)         --------->ARR14(2)<------NtERF2            --------->TOE1(3)        --------->LBD16--------->ANAC46            --------->TOE2(3)      <---------LBD16  <---------RAP2.3(2)    <----------DOF2         <---------ARR14(2)      <-----------GT1 --------->ETT(2)   <------MYB46(1)             -----         --------->ARR14(2)<---------DAG2    --------->ALFIN1       <---------DEAR3(2)          <---- --------AHL20(2)          <----------DOF2   <---------AtMYB61      <------MYB83        <---------At4g35610 ------->ATHB12     <---------DEAR3(1) <---------ARR14(2)--------->ATERF1(1)            --------->At4g35610   tttattggtcgaatccttatcggcgatgacttttttcaccggaatcggtggtagacggcggaggcgaagtcggttttctttagattactcatcttccatg  15661900                    --------->ANAC46                    <---------bZIP60(1)                     --------->ATHB12                <---------WOX13(1)                      ------>ZmHOX2a(1)                      <-----   <---------TOE1(3)--------->bZIP60(1)             --------->ARR14(2)                  <------MYB83   <---------TOE2(3)--------->ETT(2)                <---------ARR14(2)                  <------MYB46(1) -->MYC3        <--------P <---------YAB1          --------->WOX13(1) <---------AtMYB61 <---------ANAC46 ---MYC3      <---------MYB46(3)                <-----------HVH21   <----------DOF2    *TSS<---------   tgtttaaagtttgtactggttgacgacatatgtttgggatggagtctcaatgtcaatcctcttcattaggctttggttttgagccatgttgggttttaat  15662000                                                                                                    -                                                                                                    -                                                                                                <xxxx                                                                                               <xxxxx                                                                                              -------                                                                                              -------                                                                                              <------                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                              -------                                                                                             <-------                                                                                             <xxxxxxx                                                                                             xxxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                            <xxxxxxxx                                                                                            xxxxxxxxx                                                                                            <xxxxxxxx                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                            <----------DOF2<xxxxxxxxx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                            --------------->AGL15   -                                                                            <---------------AGL15<---                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                    --------->ALFIN1                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)              <---------YAB1           <------------CBF      --------->HSFB2a(2)  <xxxxxxxxxxxxxxxxxx    ----------->GT1 <---------ANAC46 <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----TOE2(3)--------->YAB1  --------->AHL20(2)          ------->TEIL<----------DOF2<xxxxxxxxxxxxxxxxx -DOF2     <---------YAB1   <---------AHL20(2) --------->ICU4<---------HSFB2a(2) <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)   gaattcttgtaaaatcatagttgtggggattttatttagggaattggacatgtttacgaacttctacaaacttttattctttttgaggcacttctcacgt  15662100      <----------DOF2      <---------DAG2     <xxxxxxxxxxxxxxxxsmallRNA(s)  <---------ZAT18 -------->ANAC58 -------->ANAC46 xxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxsmallRNA(se3) -->ANAC58 -->ANAC55(2) ---ANAC55(2) xxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxsmallRNA(le3) -->ANAC58 --TOE1(2) <---------ANAC58 xxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxsmallRNA(se3) xxxxxx>smallRNA(i) xxxxxxxxxxxxxxsmallRNA(fl3) xxxxxx>smallRNA(s) xxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxsmallRNA(le3) xxxxxxxxsmallRNA(i2) xxxxxxxxxxxsmallRNA(si3) xxxxxx>smallRNA(si3) xxxxxxxsmallRNA(si3) xxxxxxxxxxsmallRNA(le3) xxxxxxxxsmallRNA(le3) xxxxxxxxsmallRNA(i2) xxxxxxsmallRNA(le3) xxxxxxxxxsmallRNA(i2) xxxxxxxsmallRNA(i2) xxxxxxxsmallRNA(se3)                    <-----------GT1 xxxxxxxxsmallRNA(le3)                  <---------CCA1(2)                                        <xxx xxxxxsmallRNA(si3)                   --------->AHL20(2)                    ----------->GT1     ----- xxxxxxsmallRNA(le3)                  --------->YAB1                    <-----------GT1        <----- xxxxxx>smallRNA(si3)                <---------YAB1                  --------->ANAC55(2)    <xxxxxxxx xxxxxxxxxxxxxxsmallRNA(si3)   ----------->GT1      --------->At4g35610 --------->MYB52(1)  <xxxxxxxx -------->ANAC58          <---------AHL20(2)     <---------ATHB12    <---------ANAC55(2)   <xxxxxxxxx ----TEIL  <---------ANAC58<---------AHL20(2) <---------ALFIN1     <-----------GT1    --------->ARR11(3) xxxxxsmallRNA(si3)       --------->AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <---------ARR11(3) xxxxxxsmallRNA(le3)    --------->YAB1<---------AHL20(2)           <---------AHL20(2) <---------GLK1(2)   acaaggcacttttccttgttttttaaaaataaatggataattatatccccactcatctaaaccaaaaatttacttaaccggttagaaagattttgttttg  15662200                                                                                                   <-                                                                                                  ---                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                     <--- <------MYB46(1)--------->WOX13(1)                                                         *TSS <---- <------MYB83  --------->AHL20(2)                                                          --------->ETT(2) xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                      xxxxxxxxxxxxx ---->ATHB12   <---------AHL20(2)                    <-----------GT1                ------------>CBF ----YAB1     <---------ATHB12       <---------At4g35610                            <---------YAB1<-- xxxxxxxxxxxxxxxsmallRNA(le3)        --------->At4g35610      --------->DEAR3(1)   <---------ARR11(3) xxxxxxxxxxxxxxxsmallRNA(se3)    <-----------GT1---------->DOF2------>NtERF2  ------------>CBF <----- xxxxxxxxxxxxxxxsmallRNA(se3) <---------ICU4---------->DOF2  --------->ORA47(2) xxxxxxxxxxxxxxxxxxxxx   atttggttcccttctaataaatcaacagttgatatttacagatgagaaaagaaagttaccttcgccgactgaaattatctcacaatatcaatgtcgatgg  15662300                                                                        <---------YAB1                                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                           <-----------------AG                                                           <---------ANAC46  <---------At5g28300  <xx                                                 <-----------HVH21     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                               --------->LBD16        >>>>>>>>>GT-1       ------>ZmHOX2a(2)                        <---------YAB1       <---------LBD16<---------------AGL15       <---------ARR11(3)                     --------->ICU4       <---------HSFC1(2)--------------->AGL15       --------->ARR11(3) ------GAMYB       --------->WOX13(1)     <---------HSFB2a(1)      ----------->GT1     ------->GAMYB -------->GT1   ------>MYB46(1)           --------->HSFB2a(1)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -----P         --------->ANAC58         --------->ARR14(2)<---------ANAC58 <-----------GT1      xxxx ---GAMYB <---------ETT(1)               ---------->TaMYB80<---------ANAC58<---------YAB1<------ZmHOX2a(2) xxxxxxxxxx>smallRNA(si3)               --------->ARR14(2) <-----------------AGL1  <xxxxxxxxxxxxxxxxx -------MYB46(3)--------->ANAC46        <---------GLK1(2)  <-----------------AGL2 xxxxxxxxxxxxxxxxxxx ----MYB46(3)   ------>MYB83  ---------->DOF2xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) x>smallRNA(i2) --------->ANAC58    <---------LBD16xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxx   ttgttaattcttccgaccaagcaattactatggaaagtctcggaatctccgggtcactgtttcttgaattggttaatattactgtgcaacgatctctctc  15662400                                                                                                 <---                                         --------->LBD16                                      <------                                        --------->DEAR3(1)                                   --------                                        <---------ALFIN1                                 <---------ALFIN1                                       --------->ATERF1(1)                            --------->DEAR3(1)                         <---------AHL20(2)                                           ------->GAMYB              <---------HSFB2a(2)     ------>NtERF2                                   --------->ANAC46              --------->HSFB2a(2)     <---------ATERF1(1)                             --------->RAP2.6(2)             <---------LBD16   <-----------RAV1(1) --------->ANAC58                  <------------AtMYB77        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->ANAC58                  --------->MYB46(3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------ANAC58                                <---------At5g28300 xxxxxxxxxxxxxxxxxx>smallRNA(le3)   <---------ANAC58                               --------->MYB52(1) xxxxxxsmallRNA(se3)    --------->AHL20(2)         --------->ANAC46                <-----------GT1 xxxx>smallRNA(se3)     <---------AHL20(2)      --------->MYB46(3)          <---------At4g35610------ xxxxxxxxxsmallRNA(si3)--------->AHL20(2)------>NtERF2     ----------->TGA1xxxxxxxxxxxxxxxx>smallRNA(i)   ccttcaaacaaaacctctggaacaatttaaattgtgttgcctccgccttaaccaaggcattgtgacgatgttttttgcagcgaattaaccgccactgtga  15662500  Previous    Next  AGI:  At3g43770.1    Description:  transposable element gene. similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G45230.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G39205.1); contains domain GAG-POL-RELATED RETROTRANSPOSON (PTHR11439) Range:  from: 15661574    to: 15661987    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g43780.1    Description:  transposable element gene. pseudogene, hypothetical protein, predicted proteins, Arabidopsis thaliana Range:  from: 15662291    to: 15664021    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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