Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       <-----------GT1                                                               <---------ALFIN1                                                           ------>NtERF2                                                          --------->ANAC46                                                          ------->GAMYB                                                          --------->RAP2.6(2)                                                         --------->MYB46(3) --------->HSFB2a(2)                                                        -------->P <---------DAG2                  <---------AHL20(2)                    --------->MYB52(1)<------ZmHOX2a(2)                  --------->AHL20(1)                    <---------At5g28300------>ZmHOX2a(2)                 --------->AHL20(2)                   <---------MYB52(2) --------->ARR11(3)        <-                 <---------AHL20(2)         <---------TOE2(3)----------->RAV1(1)               ------             --------->AHL20(2)    --------->GLK1(2)  --------->MYB46(3) <---------ARR11(3)    <-----         <---------YAB1       ---------->DOF2      --------->ZAT18 <----------DOF2    <---------ANAC55(2) ------->At4g35610--------->AHL20(2)      <---------AHL20(2) <---------ALFIN1         --------->ANAC55(2)   aagcagacatgttgattaaaaaaattggaacataaagactctgtttaatgaagggaactaccgccacaactttacgatctcgaatattacttaagtctgt  15632800                    ------>ZmHOX2a(2)                   <------ZmHOX2a(2)                  <---------ARR14(3)                  --------->ARR11(3)                  <---------ARR11(3)                  <---------ARR14(2)                  --------->AGP1                                                             <-------                  --------->ARR14(2)              --------->MYB52(2)                        <-------GAMYB --------ZAT6     --------->ARR14(3)      <---------YAB1                                   --------->LBD16 --->ZAT14      ----------->ARR10   --------->MYB59                                        ---------- ----ZAT14  --------->TOE2(3)  <-----------GT1<---------ZAT6    ----------->GT1          <---------LBD16   agtgtcagtttcaaccttgagatcttcagttttttacttaggtcatcagtgttagtttgtattagattgtatatatagacagtccggtttagccggttaa  15632900                                ----------->GT1                 <---------TOE2(1)                                <---------ANAC46                <---------TOE1(1)                            <---------ZAT14                    --------->SPL7                         <---------ANAC46                    <---------SPL7                       <--                       --------->ZAT14                     <---------------AtSPL8            --------         <---------WOX13(1) --------->ZAT14                <---------TOE2(3)                 <------- --MYB52(1)----------->GT1 <---------ZAT6        --------------->AtSPL8                 <-----------GT1 ->GT1<---------YAB1   <---------ZAT14<---------AHL20(2)   <---------YAB1    ----------->GT1<--------   cttagattgtaattggtttattcggtttagtgtagagtatataaactcatatttgtacattatggtacgatgagaaatacagaaaaaatttcacatatct  15633000                                             <----------DOF2                                         <---------ANAC46                                         <---------ANAC58             ------>ZmHOX2a(2)                                         <---------ANAC58            <------ZmHOX2a(2)                               <---------RVE1(1)                    --------->ARR11(3)                              <---------ARR11(3)                    --------->ARR14(2)    <-------TEIL              --------->ARR11(3)                    <---------ARR11(3) --------DOF2                 <---------GLK1(2)                     <---------ARR14(2)            --- ->ARR11(3)                  <---------RVE1(1)                  ------>MYB83                    <---- --ARR11(3)      --------->YAB1<---------CCA1(1)                ------>MYB46(1)            <--------- -CCA1(2)       <---------ATHB12 <---------AHL20(2)        <-----------GT1           --------->AHL20(2)   ctttgattcatgttctctatcatggtatcagagatttttttttgcgtctttcgagttgattttaccttccgatcttcgatttcttcataaattctttgat  15633100                                                                                               ------                                                                                              -------                                                                                              -------                                                                                            =========                              <---------ALFIN1                                              <--------                             --------->ZAT14                             --------->YAB1     ---------                             --------->LBD16                     ----------->GT1            ---------                             --------->ZAT18                    --------->ALFIN1            ---------         <----------DOF2     <---------ZAT18                  ----------->GT1   --------->TOE2(3)   < ------>KAN4(2)            <---------LBD16                   --------->DAG2   ------->TEIL--------->REM1(1) -----YAB1        <------------CBF                    *TSS ---------->DOF2 <---------YAB1 <---------ALFIN1 -DOF2 <------------------------ANAC81              ----------->GT1     --------->ICU4  <-----------GT1   tattcgcttctctttacatcgattgttcttccgcactctcgattttggcgaaaatggtgaagaaaggtggaaaaatgatgaatctcaatgttacacctga  15633200                                                                <---------At4g35610      <---------ARR14(2)                           ------>ZmHOX2a(1)      --------->ARR14(2)                        <------ZmHOX2a(2)    <---------MYB46(3)                         <---------ARR11(3) <---------MYB46(3)                            --------->ARR11(3) --->MYB52(1)                                  <---------ARR14(3) ---->TGA1<-------GAMYB                <---------MYB46(3)       --------->At4g35610 ---->HVH21                <---------CCA1(2)   --------->ARR14(2)                                ---- ====================RAV --------->ANAC46      --------->ARR14(3)        --------->MYB46(3)      ---- -At4g35610              --------->ANAC55(1)   <---------ARR14(2)      ----------->RAV1(1)    ------- -->RAV1(2)   <---------ANAC58        <---------WOX13(1)   <---------ANAC46           <---------MYB46(3) >At4g35610   <---------ANAC58        <---------YAB1       <---------ANAC58--------->At4g35610<------ >ANAC46 <-----------RAV1(1)       <---------YAB1------>ZmHOX2a(2)    --------->MYB46(3)      <------ ---------AtMYB61 --------->ARR14(2)--------->ATHB12       <---------ANAC58<---------At4g35610-------   cgatggtggttctgttgctcgatctactcgtaactcgatgattgttgaagatcctgaagttgcgagagctcaacaacagctcaatcggtgattcgaagct  15633300     <-------TEIL                                 <---------MYB46(3)      --------->LBD16 ------->RAV1(2)                                <---------MYB52(1)  <------ZmHOX2a(2) ----->At4g35610                              --------->ATHB12     <---------ARR11(3) -->HSFB2a(1)                              --------->ANAC58        --------->ARR11(3) ---HSFC1(2)                               --------->ANAC58       xxxxxxxxxxxxxxxx>smallRNA(s) ---HSFB2a(1)                          <-----------GT1         <---------At4g35610       ------->TEIL -->HSFC1(2) ------>ZmHOX2a(2)    <---------AHL20(2)         --------->YAB1             <---------CCA1(2)   tctgaggtccatggatcgatgttgaagaaaactgatttttttgacaatccattggttctccattcatcagatcatccaggtttatcgattgtatctcaca  15633400                           <---------WRKY38(1)                           <---------ETT(2)                        <------MYB83                       <---------MYB46(3)                       <---------AtMYB61                      <---------MYB52(1)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        --------->ZAT2                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <---------STY1(2)             -------                 ----------->RAV1(1)                           --------->ANAC58       <---------MYB52(1)              --------->YAB1                                   --------->ANAC58      <-------GAMYB              <-----------GT1        --------->YAB1            --------->ANAC46     ------>ZmHOX2a(2)           <---------ICU4  --------->ETT(2)            ---------->DOF2         <---------WOX13(1)          --------->ICU4<------MYB46(1)              <-------TEIL        --------->MYB52(2)   <------     <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->At4g35610--------->STY1(2)   <---------MYB46(3)   ttcttgatggaactaattacaacagttggtcgactgcgatgaaaattagcttagatgcaaagaacaagctaggcttagttgatggatcgttgtttagacc  15633500                                                                     <---------ANAC46                                                                     <---------ANAC58                                                                     <---------ANAC58                                --------->At4g35610           <---------YAB1                      ---       --------->ATHB12     <---------ANAC46              <---------GLK1(2)            <---------YAB1      <---------YAB1   --------->ALFIN1                   --------->ARR14(2)       --------->CCA1(2) -->ARR11(3)          <-------MYC3                        <---------ARR14(2)      <---------ARR11(3) ---ARR11(3)          ------->MYC3           ----------->GT1 --------->TOE2(3)    --------->ARR11(3)   ttctgaagatgatttgagtttccatgtgtggagtagatgaaatcgtatggtgaaatcgtggattcttaatgtcgtgaacaagaagatatatgatagcata  15633600                                              <-------TEIL                                 ------>ZmHOX2a(2)----------->GT1         ===============================HOX2a_HOX2a        --------->At4g35610                     --         <------ZmHOX2a(1)     --------->ARR11(3)<---------TOE2(3)--------->ANAC58                 --       <---------TOE2(3)       <---------ARR11(3)<---------TOE1(3)--------->ANAC58          --------- -------->GT1       <---------GLK1(1) <-----------GT1     --------->GLK1(2)               <----------   ttgtatatttaggatgctatggaaatgtgggatgatctattcactacgttcaaggttaataatctgccaaggaaatatcaacttgaacaggctgtcatga  15633700  Previous    Next  AGI:  At3g43723.1    Description:  transposable element gene. copia-like retrotransposon family, has a 8.2e-252 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea) Range:  from: 15633154    to: 15637671    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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