Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   ----                                                                                                -----                                                                                                <----                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                         <---------ATHB12                                                                                        ------>MYB83                                                                                      --------->AtMYB61                                                                                     <---------MYB55(2)                                                                                     <---------ATHB12                                                                                     --------->MYB46(3)                                                                                    --------->ANAC58                                                                                    -------->P<------                                                                                  ------->GAMYB------                                              --------->ALFIN1                   --------->MYB46(3)                                            <---------ANAC46          ===============================                                            <---------ANAC58          ===============================                                            ----------->GT1           ------>ZmHOX2a(1) ------>MYB46(1)                                       <---------LBD16            --------->GLK1(2) --------->ANAC58                                       <-----------RAV1(2)        <---------ARR14(2)------>MYB83<----                                    <---------At4g35610   --------->TOE2(3)    <-----------GT1<------                               <----------DOF2----------->GT1     --------->ARR14(2)------>MYB46(1)--                            <-----------GT1 <---------ANAC58 ---------->DOF2<----------DOF2<---------LBD16      --------->YAB1------>NtERF2   --------->At4g35610--------->WOX13(1)   --------->TOE2(3)--------   ctctaccatcaaaatgtatggctgccattttcactttcatctcagggggtgtaaaatcaatctcaaagaatccttctactttaaccaaccaatcgcggat  15570300 -->ZmHOX2a(2) ---->At4g35610 --ZmHOX2a(2) ----AGP1 ----ARR14(2) ------ARR10                    --------------->AGL15 --->GLK1(2)                    <---------------AGL15 ---ARR14(1)                   ----------------->AG                                       <---------At4g35610 --->ARR14(2)              --------->AtMYB61                                              --------->At4g35610 ==HOX2a_HOX2a             <---------DAG2                                                xxxxxxxxxxxx ===HOX2a_HOX2a          ------>MYB46(1)          <---------ANAC46                     --------->WRKY38(1) -----At4g35610     --------->GLK1(1)          --------->TOE2(2)      -------->ZAP1   <---------MYB52(1) ---CCA1(2)   --------->TOE1(2)----------------->AGL1               <-----------GT1  <-------GAMYB ------------->AtSPL8    ------>MYB83          --------->TOE1(2)    <---------WRKY18(1)--------->WRKY12 ->LBD16--------->YAB1  <---------ALFIN1 <---------ZAT6  <---------TOE2(3)<------ZmHOX2a(2)   ctgagtaccatcaaaacgagggaaacccaccttaccaattcgagtgatacctgcgtaataaggctgattttgaccgatctataactccgttgagcttcag  15570400                --------->LBD16               <---------LBD16 --------->AtMYB61       ---------->DOF2        --------->MYB46(3)     ------>ZmHOX2a(1) --------->At4g35610    --------->TOE2(3)  <---------At4g35610  <------ZmHOX2a(2)   <---------ANAC46            --------->At4g35610      <---------ANAC58  <------- <---------GLK1(2)<-----------HVH21               <---------At4g35610    <---------YAB1   <---------At4g35610 <---------ARR14(2)----------->TGA1       --------->ALFIN1     --------->ZAT6      <---------ANAC58 --------->ARR14(2)----------->HVH21     ------->MYC3        >>>>>>>>>>>>>>>>>LFY  <---------ANAC58 xxxx>smallRNA(s)--------->LBD16         <-------MYC3       <-----------GT1<---------ANAC58  --------   accgatcctcaaagtttcccggtgacgctgaaaccatcgcaaacgtgttgtctgctatgtttttaccactggatgatgcttgatgtcttggcatcagctt  15570500                                                                         --------->ARR14(2)                                                                         <---------ARR14(2)        <---------TOE1(2)                                         --------->ANAC58     --------->TOE2(1)                                            --------->ANAC58     --------->TOE1(1)                                     --------->MYB46(3)    --------------->AtSPL8           <----------DOF2     --------->ARR14(2)                ------>ZmHOX2a(1) --At4g35610                     ------->GAMYB           <---------ARR14(2)   <---------MYB52(1)    - ->At4g35610                   -------->P             --------->YAB1----------->RAV1(2)    ==========   cactatctcgtacatttcagccatgttcttatcaacccgcttattttgttctgccatcgtaacctccaacgcctgaatccgtttgatcatctcctccaaa  15570600                                                ------>MYB83                                                ------>MYB46(1)                                              --------->MYB46(3)          <---------ANAC58                                             --------->ANAC58             <---------ANAC46                                             --------->ANAC46             <---------ANAC58                                             --------->ANAC58           ------>ZmHOX2a(2)         *TSS                                      <---------ANAC58                 <------ZmHOX2a(2)        -----                    --------->AtMYB61 <---------ANAC58         --------->ZAT2         --------->AtMYB61          <---------CCA1(2)      <XXXXXXXXXXXXXXXXXXXXMIR851-3P--------->At4g35610   --------->MYB46(3)        ------>ZmHOX2a(2)   <---------MYB52(1)<---------MYB55(2)      <---------ARR11(3)    --------- -------->ZAT2      <---------ALFIN1  <---------ANAC46   <-------TEIL --------->ARR11(3)    <-------- ==============HOX2a_HOX2a<---------YAB1 <-----------HVH21   --------->MYB46(3)   --------->MYB46(3)   cgagctctgatcgtctcttccaccacttccgattgttcttgtgtgtcacccaactcagattcaacagctcgagatcgcgtttgaaccaccatcgtttccg  15570700                                                                                        --------->YAB1                                                                                      <---------WOX13(1)                                                                                     <------------CBF    <------------CBF                                                          <---------KAN4(1) ------------>CBF                                                             <----------TaMYB80 ---->LBD16           --------->YAB1                              ----------->GT1  <---------YAB1 >ARR14(2)           <---------ZAT6                   --------->ZAT6          --------->KAN4(1)    -- -ARR14(2)<----------DOF2--------->MYB52(1)      ----------->GT1---------->DOF2--------->KAN4(2)  <--   agagtcaattggctttgataccagtgataacgaaaacaacatgttgaaacagagtaacacaaaaaacaaagtaaaactgaatattccgattgataaacta  15570800                                    --------->ANAC58                                    --------->AtLEC2          --------->HSFC1(1)        --------->ANAC58               --------->MYB52(1)          <---------HSFC1(1)        --------->ANAC46           --------->LBD16          ------>ZmHOX2a(1)--------->O2                        ------>NtERF2          --------->HSFB2a(2)      <-------MYC3           --------->MYB46(3)                  -------          <---------HSFB2a(2)      ------->MYC3           <---------HSFB2a(1)                 -------   <---------TOE2(3)       --------->TGA1a                <---------HSFC1(2)                  <------  <-----------GT1         ------>MYB83                    --------->HSFC1(2)              --------->GLK1(1) ------->CCA1(2)          ------>MYB46(1)                 --------->HSFB2a(1)    <XXXXXXXXXXXXXXXXXXX -------ARR11(3)       --------->MYB46(3) <---------GLK1(2)  <---------LBD16<------ZmHOX2a(1) <------   gatataacgttcctagaaacgcgttaccaacgtctcacatgcaagagtctcgacgagagaacctccggcaaacgatgaggaagagtctagagaattctag  15570900                                                <---------------AGL15                   <---------ANAC46             --------------->AGL15                 <---------ANAC58           <---------ZAT18                 <---------ANAC58           --------->ZAT18                     --------->ARR11(3)            <---------ARR14(2)            ------->MYC3                          <---------ARR11(3)            <---------ARR11(3)            ------->MYC2                       <-----------GT1            <---------GLK1(2)             ------->MYC4                 --------->TOE1(3) -->HSFB2a(2)<---------GLK1(1)            <-------MYC3                 --------->TOE2(3) -->HSFC1(1)--------->ARR11(3)        <-------TEIL         ---------->DOF2--------->YAB1       ------ ---HSFB2a(2)--------->GLK1(1)      --------->ZAT18    ----------->GT1----------->GT1         >>>>>>> XMIR781 --------->YAB1  ---------->DOF2  <-------MYC2--------->DAG2 <---------TOE2(3)        ------>MYB83 ---HSFC1(1)--------->ARR14(2)      <---------ZAT18  ---------->DOF2<---------DOF5.7(2)       ------>MYB46(1)   aaagattacaatcagatattcgtgtgtaaaagcatgagcgtacatgtgctcttaataaagtaaaagaagtaaacgttaataacatcttcagtcaccatcc  15571000                                          <-------MYC3                                          <-------PIF4                          --------->bZIP60(2)                          <---------ZAT2  ------->PIF5                          --------->At4g35610                          <---------At4g35610                          --------->ZAT2  ------->MYC4                                 <---------HSFB2a(2)                         ------>NtERF2    <-------PIF5                                 --------->HSFB2a(2)          --------->TOE1(3)      ---------->DOF2                                       <---------HSFC1(1)          --------->TOE2(3)     --------->AtMYB61                                  ------>ZmHOX2a(2)  <---------ANAC46  <---------WOX13(1)    ------->MYC2                           <---------ARR11(3)  ----------->GT1  <---------ANAC58       ------->PIF4                           --------->ARR11(3) --->MYB46(3)      <---------ANAC58       ------->MYC3                       <---------At4g35610    - >>>>>>>>>>LFY    --------->ATHB12        <-------MYC2               <---------ALFIN1  --------->HSFC1(1)   aatgtcgttaaacctcaagttgattgccagctcaccaaagcgcatgtgctactcttcttaacccaaacttcccactgccaactgatcttctagaatgcta  15571100                                            <---------ANAC58                                            <------MYB46(1)                             --------->ICU4<-----------RAV1(1)                     <---------YAB1     <---------ARR14(2)                   --------->YAB1<---------ICU4                  --------->ICU4<---------YAB1                                ----------->GT1                  <---------YAB1--------->ICU4       <---------TOE2(3)       <---------ATHB12                <---------ICU4<---------ICU4<------MYB83                   --------->MYB52(1)                --------->YAB1--------->YAB1<---------ANAC58        --------->TOE1(3)    --------->GLK1(2)--------->ICU4<---------YAB1<----------DOF2   <---------At4g35610   ---------->DOF2    --------->ARR14(2)  <---------YAB1------->TEIL   <---------TOE1(3)   --------->MYB46(3) -------->YAB1 --------->ICU4<---------ATHB12---------->ID1        --------->At4g35610  <---------WRKY45   tatcagaatccaattgaattatgattatgaaatcatgatgaatatttggtgctttagggtttcagatttagcttaaccaatggtttatagtcaaagagat  15571200  Previous    Next  AGI:  At3g43654.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 4.7e-150 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus) Range:  from: 15566343    to: 15570698    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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