Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              --------->ANAC58                                                            --------->ANAC46                                                            --------->ANAC58                                                    ------>MYB83                  --------->At4g35610                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             --------->TOE2(3)                  <-----------RAV1(2)         <xxxxxxxxxxxxxxxxsmallRNA(i)        --------->TOE1(3)       --------->TOE2(3)    ------>ZmHOX2a(1)                     <-----------GT1--------->ANAC46  --------->YAB1      ------  ----------->RAV1(2)               <---------DAG2  ------>MYB46(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) --->HVH21      <----------DOF2     <----------DOF2----------->RAV1(1)------>ZmHOX2a(1)    --------->ICU4   ataatcctgagcttgagacttttctgagtctaattccacttttaaaaccttaccaacacaagacgcaatctccttaatcgtatcagatgtgtaatagttg  15549400         --------->ANAC55(2)                                                 <---------ICU4         --------->ANAC58                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         --------->ANAC46                                               <------ZmHOX2a(2)         --------->ANAC58                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <---------ANAC55(2)                                    --------->ANAC46*TSS--------->ANAC46       <-----------GT1                            <----------DOF2--------->MYB46(3) --------->ANAC58    --------->KAN4(1)                           ------>ZmHOX2a(1)<---------MYB55(2) --------->ANAC58    <---------KAN4(1)       <------ZmHOX2a(1)   ===============================HOX2a_HOX2a<---------ATHB12 <------ZmHOX2a(1)<---------ARR14(2)          <---------ZAT18 <---------ALFIN1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ----->HVH21      --------->ARR14(2)--------->TOE2(3)      <-----------GT1   --------->YAB1     -----   acaggaatattacgcaatcgaatccaaacaggaagaaacattagatagtcctcttttggtttctccacccatcgatccattatcacacaccattcatccc  15549500                                                                                              <------                                                                                             <-------                                                                                           --------->YAB1                                                                                           <---------ICU4                                                                                          <---------YAB1                                                                                          --------->ICU4                                                                                        --------->YAB1                                                                                        <---------ICU4                                                                                       --------->ICU4                                                                                     --------->ATHB51                                                                                     <--------HAHB4                                                                                     <---------ICU4                                                                                     -------->ATHB1                                                                  <---------ANAC46   --------->YAB1                                                            <---------ARR11(3)       -------->HAHB4                                      ------>ZmHOX2a(1)     --------->ARR11(3)       <---------AHL20(2)                                 --------->YAB1       <------------CBF              <---------YAB1                                <---------ATHB12    --------->ARR11(3)  ---------->DOF2<---------YAB1                            --------->AHL20(2)  ---------->DOF2   <---------ANAC58  --------->ICU4                          --------->ANAC58   <---------AHL20(2)   <---------ANAC58  <---------ATHB12 ---->LBD16               --------->ANAC58   --------->AHL20(2)<----------DOF2      <---------ATHB51-   gagtccaaactccagtttttaaaatttcaagtaaatcatcctctgatttaaaaagaaattgaaatctttcttgtgaaagagctctaattattattattac  15549600                                         --------->YAB1                                         <---------ICU4                                        --------->ICU4                                        <---------YAB1                                      --------->YAB1                                      <---------ICU4                                      -------->ATHB1                                     <---------YAB1                                  <---------AHL20(2)                                     --------->AHL20(1)                             --------->AHL20(2)                                     --------->ICU4                                 ----------->TBP                                     <---------AHL20(2)                    <<<<<<<<<SARD1                                     --------->AHL20(2)                    <<<<<<<<<CBP60g                                  <---------AHL20(2)                      ------>MYB83              ---------->DOF2     --------->AHL20(2)                      ------>MYB46(1) --------->TOE1(1)               --------->AHL20(2)                     <---------MYB59 -----GT1     <---------ZAT14 --------->YAB1               <---------AHL20(2)       <---------ATHB12 --YAB1       --------->ZAT14<---------YAB1  <---------AHL20(2)    --------->YAB1 --------------->AGL15 -------->HSFB2a(2)      <---------GLK1(2) <---------YAB1  --------->AHL20(2)   ------------>CBF   --   acctcgaacccttgagtaaagtctcaaaattctcataaaattattattattttctctaaaattaaatactcataccaaatttctcaataaatagaactca  15549700                   --------->ANAC46               <---------ALFIN1      --------->ALFIN1      ----------------------->TaNAC69(2)                                          ------>MYB83    <---------ANAC58            <-----------GT1                                   ------>MYB46(1)    <---------ANAC55(1)   --------->YAB1                                --------->ANAC58    <---------ANAC46 <---------ZAT14                                    --------->ANAC58   <---------TOE2(3)    <---------ANAC58 --------->ZAT14  <----------DOF2         <-----------GT1   <---------MYB59 <---- ------->TOE2(3) <---------ALFIN1  <---------ALFIN1 <----------DOF2   ---------->DOF2    <---------AHL20(2)   accttggcgtgtgttctccacacttcactgatattctccactttcattttcagtctttctcatttaacaaaacaaagcaaaaccaaactatttaagttta  15549800                                                                                                   <-                                                         <-----------GT1                           <-                                                 --------->DAG2                                 <----                                               ---------->DOF2                                  <----                                            --------->ANAC58                                    <----                                            --------->ANAC58                              --------->At4g35610                                         <------ZmHOX2a(2)                                <---------At4g35610              <---------ALFIN1          --------->ARR11(3)                               --------->DEAR3(1)    <---------GLK1(2) ------->TEIL      <---------ARR11(3)                          ----------->ARR10 -------GT1--------->ANAC46         ---------->DOF2  <----------DOF2    --------->At4g35610<---------   accatggaatctcacaacaccttgaacctagacatggagaaagatcaagaaaaggcttttgactactccaaacgagctcaatggctaagagccgctgtgc  15549900                                                        --------->WOX13(1)                                               <---------MYB46(3)                                               <------MYB46(1)                                               <------MYB83                                              <---------AtMYB61                                             <--------P---------->DOF2                                         <---------ANAC46               <------ZmHOX2a(2)        ------->GAMYB                    <---------ANAC58--------->AtLEC2   <------NtERF2                     --------->ATHB12 --------->WRKY18(1)    <---------ARR11(3)  ------>NtERF2                     <---------YAB1   <-----------HVH21 <---------ARR11(3) -----MYB83                       --------->YAB1  <---------ZAT18      --------->ARR11(3) -----MYB46(1)              <----------DOF2 <-------GAMYB--------->ANAC58    --------->ARR11(3) -----ANAC58            <---------DEAR3(1) --------->ALFIN1          --------->ICU4               --- -----ANAC58           --------->RAP2.6(3) <-----------RAV1(1)  <----------ID1 ------>ZmHOX2a(2)  <-- -----AtLEC2         ----------->HVH21   <---------ANAC58--------->ANAC58  <---------YAB1        <--- -CDC5 --------->MYB46(3)------>NtERF2  <---------MYB46(3) --------->YAB1--------->YAB1      <-------   ttggtgccaacgacggtcttgtctcgacggcttcacttatgatgggtgttggtgcggtcaagcaaaacgtcaagatcatgatcttaactggttttgccgg  15550000           <---------ANAC46           <---------ANAC58           <---------ANAC58          <---------ZAT2       <------NtERF2       --------->LBD16                                                     <---------At4g35610      <---------DEAR3(1)                                                   --------->At4g35610     <---------LBD16                                                     <-----------RAV1(2)     <---------ANAC46    <-------GAMYB                                <---------At4g35610 ------>ZAT14     <---------ANAC58                                    <---------ZAT2 -------ZAT14     <---------AtLEC2                                  <--------P                 <----- -------DOF2      <---------ANAC58    ---------->ID1   <---------ICU4 --------->At4g35610  --------->LBD16 --LBD16<------NtERF2   <---------MYB46(3)   --------->ZAT14     <---------TOE2(3)      --------->MYB52(1)   tttagtggccggagcttgtagcatggcgattggagagtttgtctctgtttactctcaatatgacatagaggtagctcagatgaagagagagaccggagga  15550100                                                                                          <------NtERF2                                                                                          --------->At4g35610                                                                                         ------>NtERF2                                                                                         <---------ERF1                                                                                         <---------RAP2.3(1)                                                                                        <---------DEAR3(1)                                                                                        <---------RAP2.3(2)                                                                                        <---------RAP2.3(3)                                                                                        <---------ATERF1(2)                                                                                        --------->ATERF1(2)                                                                                       --------->RAP2.6(3)                                                                                       <---------LBD16                                                                                   --------->MYB52(2)                                                                                  --------->ATHB12                                                   <---------MYB52(1)            <---------MYB52(1)                                                   --------->DOF5.7(2)          <---------RAP2.6(3)                                             --------->At4g35610                <-------GAMYB                                            --------->GLK1(2)                  <---------ANAC46                                            --------->ARR14(2)                <-----------------AGL3                                          <---------At4g35610                 <------NtERF2   <------                                       <---------At4g35610                    ----------------->AGL1                           XXXXXXXXXXXXXXXXXXXXXXX>MIR404 <---------ARR14(2)  <-----------------AGL2              --------->HSFC1(2)       --------->At4g35610--------->ARR14(2) ------>NtERF2<---------At4g35610              --------->HSFB2a(1)      <------NtERF2 <---------DOF5.7(2)    ----------->TGA1 <------NtERF2              --------->At4g35610   <---------At4g35610<---------ANAC58  <---------DEAR3(1)<---------DEAR3(1)              <---------HSFC1(2)--------->ANAC46  <----------DOF2        --------->ALFIN1<---------ATERF1(1)      ---------->DOF2     ----------->RAV1(1)<---------At4g35610      <---------DEAR3(1)<---------RAP2.6(2) -ZmHOX2a(1)  <---------HSFB2a(1)   --------->At4g35610<---------ANAC58  <---------AtMYB61--------->ATERF1(1)   gagattgagaaagagaagcttccaagtccaacacaagcggctgcagcatctgcgttagcgttttctcttggggcgatggtgccgttattggcggcagcgt  15550200                                                       <------MYB83                                                       <------MYB46(1)                                                       <---------MYB46(3)                                                      <---------AtMYB61                                                      <---------DEAR3(1)                                                    <-------GAMYB                                                   <---------ANAC58                                                   <---------ANAC58                                                  <------NtERF2                  --------->ARR14(2)                                                <---------DEAR3(1)               <---------ARR14(2)                       <------MYB46(1)       <---------ANAC46                   <-------GAMYB -------                       <------MYB83          <---------ANAC58                  <---------MYB46(3)                      <---------MYB46(3)     <---------ANAC58            --------->MYB52(2)--------->ANAC58                      --------->ALFIN1    <---------MYB52(1)          <-------GAMYB        --------->ANAC58                    <---------ARR14(2)--------->At4g35610            <---------MYB46(3)  ---------->DOF2                    --------->ARR14(2)<---------At4g35610            <------MYB83<----------DOF2                   <------ZmHOX2a(1)  <------NtERF2<---------ANAC46  <------MYB46(1) <---------LBD16            --------->DAG2--------->ZAT18 <---------ARR14(2)      <---------AtLEC2  <---------ANAC46      ----------->GT1 <---------AtMYB61 <---------MYB46(3)   --------->ATHB12  <---------DEAR3(2)  ---------->DOF2  --------->ATHB12  ------------>AtMYB77   <---------YAB1    <---------RAP2.6(2) ---ANAC46 ---------->DOF2<---------ZAT18 --------->ARR14(2)--------->ICU4    <---------DEAR3(1)    <   ttgtgaaagagtataaagtgaggattggtgcaatagtggcagcggttacgttggcgttggtgatgtttggatggttaggggcggttttggggaaagcacc  15550300  Previous    Next  AGI:  At3g43625.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.3e-32 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus) Range:  from: 15543173    to: 15549480    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g43630.1    Description:  nodulin, putative. similar to nodulin, putative [Arabidopsis thaliana] (TAIR:AT3G43660.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65135.1); contains InterPro domain Protein of unknown function DUF125, transmembrane (InterPro:IPR008217) Range:  from: 15549804    to: 15550406    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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