Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        ---------->DOF2                                               <-----------GT1  <----------DOF2                                               ------>MYB83<----------DOF2 ---------->AtSPL3                                              ------>MYB46(1) ---------->AtSPL8                                            <---------MYB59                   ----- ----------------WRI1                                         --------->TOE2(3)              -------- -----GT1                    <---------ZAT14                ------->TEIL<----------DOF2------->TEIL   agtactttcaaagggagccatagagggagactgaagagatagagtcttgggtctagactctgaacctaattctcctttctttaaacttgcatctctaata  15549100                                                                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                      ---------->DOF2                                                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                               ==========================bZIP_DOF                                               <----------DOF2      <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <xxxxxxxxxxxxxxxxsmallRNA(i)                         <---------At4g35610  <---------DAG2   <---------O2                         <                         --------->At4g35610<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 ----                      <----------DOF2   --------->WOX13(1)     ==================bZIP_DOF     <------ ---->YAB1      <---------AHL20(2) <xxxxxxxxxxxxxxxxsmallRNA(i)<---------TGA1a            <---------GLK1(2) ->YAB1        --------->AHL20(2)--------->MYB52(1)      <-----------HVH21              ------>ZmHOX2a(1)   atcttctcaaaattagatttatttctttgctgagaaaacggacaatcacctttctcatgagtcagacgttggcaaagaaaacacctcttcctgattcttt  15549200                                     --------->YAB1     <---------ANAC46                                 <------ZmHOX2a(1)     <---------LBD16                                <------MYB46(1)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------     ---------->DOF2            <------MYB83  <----------DOF2                       ----------->RAV1(2)   --------->YAB1      ----------->HVH21<---------ARR14(2)     <------ZmHOX2a(1)    --------->At4g35610 ---------ICU4        --------->AtMYB61 <---------GLK1(2)--------->LBD16 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) ----->YAB1  ------->GAMYB    <--------P--------->ARR14(2) ---------->DOF2    <xxxxxxxxxxxxxxxxsmallRNA(s) ----DOF2 --------->MYB52(1) <---------MYB52(1)   <---------YAB1 --------->GLK1(1)<---------ALFIN1   cataatcaaaagtaaccgagacaacctcaccggtaggaatcagaacctctttacaattgcgcaaaggatttcgaacatcaaacagcacctgaactctgac  15549300                                                            --------->ANAC58                                                            --------->ANAC58                                                            --------->ANAC46                                                    ------>MYB83                  --------->At4g35610                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             --------->TOE2(3)                  <-----------RAV1(2)         <xxxxxxxxxxxxxxxxsmallRNA(i)        --------->TOE1(3)       --------->TOE2(3)    ------>ZmHOX2a(1)                     <-----------GT1--------->ANAC46  --------->YAB1      ------  ----------->RAV1(2)               <----------DOF2 ------>MYB46(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) --->HVH21      <----------DOF2     <---------DAG2 ----------->RAV1(1)------>ZmHOX2a(1)    --------->ICU4   ataatcctgagcttgagacttttctgagtctaattccacttttaaaaccttaccaacacaagacgcaatctccttaatcgtatcagatgtgtaatagttg  15549400         --------->ANAC58                                                    <---------ICU4         <---------ANAC55(2)                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         --------->ANAC46                                               <------ZmHOX2a(2)         --------->ANAC55(2)                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         --------->ANAC58                                       --------->ANAC46*TSS--------->ANAC46       <-----------GT1                            <----------DOF2<---------MYB55(2) --------->ANAC58    <---------KAN4(1)                           ------>ZmHOX2a(1)--------->MYB46(3) --------->ANAC58    --------->KAN4(1)       <------ZmHOX2a(1)   ===============================HOX2a_HOX2a<---------ATHB12 <------ZmHOX2a(1)--------->ARR14(2)          <---------ZAT18 <---------ALFIN1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ----->HVH21      <---------ARR14(2)--------->TOE2(3)      <-----------GT1   --------->YAB1     -----   acaggaatattacgcaatcgaatccaaacaggaagaaacattagatagtcctcttttggtttctccacccatcgatccattatcacacaccattcatccc  15549500                                                                                              <------                                                                                             <-------                                                                                           <---------ICU4                                                                                           --------->YAB1                                                                                          <---------YAB1                                                                                          --------->ICU4                                                                                        <---------ICU4                                                                                        --------->YAB1                                                                                       --------->ICU4                                                                                     --------->ATHB51                                                                                     -------->HAHB4                                                                                     -------->ATHB1                                                                                     <---------AHL20(2)                                                                  <---------ANAC58   <---------ICU4                                                            <---------ARR11(3)       <--------HAHB4                                      ------>ZmHOX2a(1)     --------->ARR11(3)       --------->YAB1                                 --------->YAB1       <------------CBF              --------->ICU4                                <---------ATHB12    --------->ARR11(3)  ---------->DOF2<---------YAB1                            --------->AHL20(2)  ---------->DOF2   <---------ANAC58  <---------YAB1                          --------->ANAC58   --------->AHL20(2)   <---------ANAC46  <---------ATHB12 ---->LBD16               --------->ANAC58   <---------AHL20(2)<----------DOF2      <---------ATHB51-   gagtccaaactccagtttttaaaatttcaagtaaatcatcctctgatttaaaaagaaattgaaatctttcttgtgaaagagctctaattattattattac  15549600                                         <---------ICU4                                         --------->YAB1                                        --------->ICU4                                        <---------YAB1                                      --------->YAB1                                      -------->ATHB1                                      <---------ICU4                                     <---------YAB1                                  <---------AHL20(2)                                     --------->AHL20(2)                             --------->AHL20(2)                                     --------->ICU4                                 <---------ATHB12                                     <---------AHL20(2)                    <<<<<<<<<CBP60g                                     --------->AHL20(1)                    <<<<<<<<<SARD1                                  <---------AHL20(2)                      ------>MYB46(1)              --------->ZAT14     --------->AHL20(2)                      ------>MYB83 --------->TOE1(1)               --------->AHL20(2)                     <---------MYB59 -----GT1     <---------ZAT14 --------->YAB1               --------->AHL20(2)       ----------->TBP --YAB1       ---------->DOF2<---------YAB1  <---------AHL20(2)    --------->YAB1 --------------->AGL15 -------->HSFB2a(2)      <---------GLK1(2) <---------YAB1  <---------AHL20(2)   ------------>CBF   --   acctcgaacccttgagtaaagtctcaaaattctcataaaattattattattttctctaaaattaaatactcataccaaatttctcaataaatagaactca  15549700                   --------->ANAC46               <---------ALFIN1      ----------------------->TaNAC69(2)      --------->ALFIN1                                                            ------>MYB46(1)    <---------ANAC58            <-----------GT1                                   ------>MYB83    <---------ANAC58 <---------ZAT14                                    --------->ANAC58    <---------ANAC46 --------->ZAT14  <----------DOF2                   --------->ANAC58   <---------TOE2(3)    <---------ANAC55(1)   --------->YAB1                      <-----------GT1   <---------MYB59 <---- ------->TOE2(3) <---------ALFIN1  <---------ALFIN1 <----------DOF2   ---------->DOF2    <---------AHL20(2)   accttggcgtgtgttctccacacttcactgatattctccactttcattttcagtctttctcatttaacaaaacaaagcaaaaccaaactatttaagttta  15549800                                                                                                   <-                                                         <-----------GT1                           <-                                                 --------->DAG2                                 <----                                               ---------->DOF2                                  <----                                            --------->ANAC58                                    <----                                            --------->ANAC58                              <---------At4g35610                                         <------ZmHOX2a(2)                                --------->At4g35610              <---------ALFIN1          <---------ARR11(3)                               --------->DEAR3(1)    <---------GLK1(2) ------->TEIL      --------->ARR11(3)                          ----------->ARR10 -------GT1--------->ANAC46         ---------->DOF2  <----------DOF2    --------->At4g35610<---------   accatggaatctcacaacaccttgaacctagacatggagaaagatcaagaaaaggcttttgactactccaaacgagctcaatggctaagagccgctgtgc  15549900                                                        --------->WOX13(1)                                               <------MYB83                                               <------MYB46(1)                                               <---------MYB46(3)                                              <---------AtMYB61                                             <--------P---------->DOF2                                         <---------ANAC46               <------ZmHOX2a(2)        ------->GAMYB                    <---------ANAC58--------->ANAC58   <------NtERF2                     --------->ATHB12 --------->WRKY18(1)    <---------ARR11(3)  ------>NtERF2                     <---------YAB1   <-----------HVH21 --------->ARR11(3) -----MYB83                       --------->YAB1  <---------ZAT18      <---------ARR11(3) -----MYB46(1)              <----------DOF2 <-------GAMYB--------->AtLEC2    --------->ARR11(3) -----ANAC58            <---------DEAR3(1) --------->ALFIN1          --------->ICU4               <-- -----AtLEC2           --------->RAP2.6(3) <-----------RAV1(1)  <----------ID1 ------>ZmHOX2a(2)  --- -----ANAC58         ----------->HVH21   <---------ANAC58--------->ANAC58  <---------YAB1        <--- -CDC5 --------->MYB46(3)------>NtERF2  <---------MYB46(3) --------->YAB1--------->YAB1      <-------   ttggtgccaacgacggtcttgtctcgacggcttcacttatgatgggtgttggtgcggtcaagcaaaacgtcaagatcatgatcttaactggttttgccgg  15550000  Previous    Next  AGI:  At3g43625.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.3e-32 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus) Range:  from: 15543173    to: 15549480    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g43630.1    Description:  nodulin, putative. similar to nodulin, putative [Arabidopsis thaliana] (TAIR:AT3G43660.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65135.1); contains InterPro domain Protein of unknown function DUF125, transmembrane (InterPro:IPR008217) Range:  from: 15549804    to: 15550406    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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