Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    <------ZmHOX2a(2)               <xxxxxxxxxxxxxxxxsmallRNA(s)              --------->HSFB2a(2)                                                                   <              <---------HSFB2a(2)                                      --------->AHL20(2)           <        <---------ARR11(3)             <------ZmHOX2a(2)        --------->GLK1(1)       <---------TOE2(3)        --------->ARR11(3)            --------->ARR11(3) <---------WRKY18(1)           ---------->DOF2 --------->At4g35610---------->DOF2   <---------ARR11(3) <-----------GT1           <----------DOF2  - --------->ZAT2--------->LBD16    ---------->DOF2       ----------->HVH21  <-----------RAV1(1)   ---- --->ICU4    <---------LBD16    --------->YAB1          --------->WRKY12<---------AHL20(2)    -------   attagctggacatcttccggatcaaagagctcattcaaaagatcaatattccaaaaatttgaccggctatctattaaatgttggacttttaaagatgggt  15519900                                                     <------ZmHOX2a(2)                                                    <---------ARR14(2)                                                    <---------GLK1(2)                                                    --------->ARR14(2)                                                    <-----------ARR10                                                 --------->ANAC58                         <----------DOF2              --------->ANAC55(2)                --------->ANAC46                     ------>MYB83 <--------ATHB1                                  --------->ANAC58                     ------>MYB46(1) -------->ATHB1                             <---------ARR14(2)                        -------->P --------->ATHB51                         <------NtERF2 ------>ZmHOX2a(1)           <xxxxxxxxxxxxxxxx <---------ICU4                ==============================HOX2a_HOX2a           --------->MYB46(3) --------->ATHB12           <---------LBD16 --------->ARR14(2)      <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->YAB1             <-----------RAV1(2) --------->LBD16     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <------------ATHB5  <---------ANAC58    --------->LBD16xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------- ---------ATHB12     <---------ANAC58   --------->RAP2.6(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---------ATHB51<---------ICU4 =============================HOX2a_HOX2a      ----------->RAV1(2) <--- -------->ICU4<---------ANAC55(2)      <---------LBD16------>ZmHOX2a(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -------->ATHB5 --------->ATHB12       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------LBD16--------- ---->GT1  <---------MYB52(1)  <------ZmHOX2a(1)<---------LBD16     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   caataattgaaccattacttattgctggtctcaggaattgagccggaatccacggatcctcccaaactgagatagatgcccctgaaccaactcttttaat  15520000                   ------>ZmHOX2a(2)                  --------->CCA1(2)                 >>>>>>>>>GATA-3                 --------->AGP1                 >>>>>>>>>GATA-1                 >>>>>>>>>GATA-4                 <---------ARR11(3)                 >>>>>>>>>GATA-2         <<<<<<<<<GT-1   ------>ZmHOX2a(1)  --------->At4g35610                                                         ---   <----------DOF2<------ZmHOX2a(2)                                                               <--   =======================HOX2a_HOX2a                                                             <--   ======================HOX2a_HOX2a                             <---------AHL20(2)              ---- xxxxxxxsmallRNA(fl3) <---------At4g35610                       <---------AHL20(2)               ---- -->YAB1 <-----------GT1                                        --------->AHL20(2)             ------ ------ICU4      --------->ARR11(3)                         <---------YAB1             <---------GLK1(1) >AHL20(2)      --------->GLK1(1)                       ----------->GT1               <---------GLK1(2)   aagtcctttattaaccagagatctagctgaacaaagacttctccatccataagacggagagtataattttatattttccaaagaattggattttcgataa  15520100                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                --------->ANAC46                                           <---------YAB1                                        <---------MYB52(1)                                    <---------At5g28300                             --------->ARR14(2) --------->ANAC58     <----------DOF2         <---------ARR14(2) ------->GAMYB                   <---------AHL20(2) ------>ARR11(3)             --------->GLK1(2)  --------->ANAC58               --------->AHL20(2) -------ARR11(3)            <---------GLK1(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->AHL20(2) ---------ARR10        --------->DAG2<------------AtMYB77                      --------->YAB1 ----->CCA1(1)        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               <---------At4g35610 ----->RVE1(1)        ---------->DOF2<------------MYB.PH3(1)            --------->At4g35610      ---- --->YAB1     --------->TOE2(3)   ----------->HVH21   --------->MYB52(1)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   tatctccctttgaaaacctttgcaaaaagagaatctgtaaccgttatcaaacgccataactgtttcgatagtatagctgaattaaaatcatctatactcc  15520200              ------>MYB83                 --------->ANAC58              ------>MYB46(1)              --------->ANAC58         <---------ALFIN1                  --------->ANAC46        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                            *TSS        --------->MYB46(3)         <---------AHL20(1)                                  ---------->DOF2   <---------MYB59                 <---------AHL20(2)                                --------->ANAC58   --------->TOE2(3)               --------->AHL20(1)                                --------->ANAC46   --------->TOE1(3)               --------->AHL20(2)                                --------->ANAC58 ----->LBD16--------->AtMYB61--------->ANAC46         <---------ZAT18<-----------GT1--------->LBD16   gaaaacctaaaccaccttccaatttgctaatacacaatttattccaagccatctagtgcatacctctaaattcaccattcgaattccacgaaagtcacat  15520300                                                       <---------------AGL15                                                   <---------WOX13(1)                                                  <------------CBF                                                 -------->HAHB4                                                 --------->ATHB12                                                 <---------ICU4                                                 --------->ATHB51                                                 <--------ATHB1                 <---------ARR11(3)              --------->AHL20(2)                 --------->YAB1                 --------->ARR11(3)---             <---------YAB1                     <---------ATHB51                --------->GLK1(2) <--          <---------AHL20(2)                    <---------YAB1                 --------->RVE1(1)  <--          <---------YAB1                  --------->AtLEC2                     --------->CCA1(1)  <--          --------->ICU4         --------->YAB1 --------->ICU4        --------->At4g35610       ----- <---------GLK1(2)              <-------TEIL    <---------ATHB12<---------AHL20(2)            <------   atagaatttgatattattatataccaaaaatatgttcataatacatgctaataattgctaaactatgtaattagctccaaaaaatctctatttcaaacta  15520400                                      <---------AHL20(2)         <---------SPL7            ----------->GT1       <---------------AtSPL8   <---------REM1(1)       <---------------AtSPL3 <-------GAMYB  --------->TOE2(3)          --------->MYB52(2)  <---------MYB59            <---------MYB46(3)                            ------->GAMYB ------>MYB46(3)           <---------MYB52(1)                              ----------->GT1 -------MYB111(2)          <--------P --------->AHL20(2)                   --------->YAB1 -------MYB46(2)       ------>ZmHOX2a(2)                      <---------YAB1--------->At5g28300 -------MYB111(1)    <---------ARR11(3)                      <---------TOE2(3)                  <---- ---->MYB52(1)       --------->ARR11(3)                 --------------->AGL15            --------->YAB1 ---MYB52(2)    <-------TEIL --------->MYB111(1)     <-----------GT1       --------->TOE2(3)   <-----   actacctaagtagtacggttcatgatctggttagttgtagttaattaagcacttatttctatttatgtttatatcaaccgtaattaagcacttatagtta  15520500                                                                                                    -                                                                                                    <                                                                                                  <--                                                                                                 ----                                                                                                 <---       <---------AHL20(2)                                 --------->AtMYB61--------->TOE2(3)    <----    ----------->GT1                            ----------->GT1           ------>MYB83          ------ <---------REM1(1)         <-----------GT1   <------------CBF            -------->P   <<<<<<<<<TBF1<- -----At5g28300         --------->YAB1  --------->At5g28300              ------>MYB46(1)    ------>ZmHOX2a(1) ------GT1           --------->YAB1    ----------->GT1<----------ID1    <---------ALFIN1  -----------   cagttgtagttaatttttaaaaaacataataacttatcgaggggtaaaattgtaaaacgaccaaaaaacaaaccctaccctaatcttcttcttcctgcgc  15520600 -------->ARR14(2)                                                      <---------At4g35610 ---------ARR14(2)                                                      ------>NtERF2 -------SPL7                                                  --------->ANAC58    --------->ANAC58 ----->DEAR3(1)                                               --------->ANAC46    --------->ANAC58 ------ANAC46                                                 --------->ANAC58    --------->ANAC46 --NtERF2                    --------->AHL20(2)     ------>MYB83  <----------DOF2------>ZmHOX2a(1) >NtERF2XXXXXXXXXXXXXXXXXXXX>MIR835-3P              ------>MYB46(1)     --------->At4g35610 --------CCA1(2)       ----------->GT1  <---------DAG2<---------ATHB12---------->ID1 >RAV1(2)*TSS        ---------->DOF2    <----------DOF2<---------ICU4 <---------RAP2.6(2)   ---------   cgtatcccaaaaaaaacacagaagaaagaaaaaaaattcgaacttttctgaaccaaatcattccaagcctttgccgcttaatcctcgcaatccgatttct  15520700                                    <---------ICU4                            ------>ZmHOX2a(2)                           --------->GLK1(1)                           <---------GLK1(1)                          <---------AGP1                          <---------ARR11(3)                          --------->ARR11(3)                         <---------CCA1(2)------>NtERF2  ----------->GT1      <---------ANAC46             <---------GLK1(2)      --------->YAB1    --------->ICU4       ----------->TGA1 >GLK1(1)    --------->ARR11(3)    <---------ATHB12 ---------->DOF2        ----------->HVH21       --   agggtttagaaattagattttgggtttggatctcttaatcatgccgaggcagaataaagatgaaaaatttgtttttgatgacggagaagacgaagacaga  15520800  Previous    Next  AGI:  At3g43586.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 15518656    to: 15520289    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g43590.1    Description:  zinc knuckle (CCHC-type) family protein. similar to zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] (TAIR:AT5G36240.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67412.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain Zinc finger, CCHC retroviral-type; (InterPro:IPR013084) Range:  from: 15520609    to: 15523562    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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