Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                              <---------bZIP60(1)                                                                         <---------MYB46(3)                                    <---------TOE1(3)                  <---------ANAC58                                    <---------TOE2(3)                  <---------ANAC58                         <---------YAB1                               <---------MYB46(3)                      --------->GLK1(2)                           --------->CCA1(2)                     <---------GLK1(2)                           <---------ARR11(3)                     --------->ARR11(3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->TOE1(3)  <---------ARR11(3)                  <------ZmHOX2a(1) <---------AtMYB61  --------->TOE2(3) <---------RVE1(1)             ---------->DOF2--------->ARR11(3)--------->ICU4 ---->GT1     <-----------HVH21<----------DOF2------------------------>ANAC81 --------->bZIP60(1)   taaaccttcaaaaacatgtgagagattttgattcttttaaggtatcaagagcaaaaggaggaagagagatattggttgtggtgtcataaataagtttatt  15497800                                                                      <---------YAB1                                     <---------YAB1                <---------AHL20(2)           <<<<<<<<<GATA-1         --------->YAB1               <---------AHL20(1)          <-----------GT1         <---------YAB1                --------->AHL20(1)     <---------YAB1              <---------ARR11(3)             <---------ARR11(3)     --------->ICU4           --------->YAB1     <---------HSFB2a(2)  --------->ICU4    <---------TOE2(3)      --------->YAB1        --------->HSFB2a(2) <---------TOE2(3)            <--  --------->ICU4 <---------ICU4  --------->ARR11(3)    --------->TOE2(3)  <---------AHL20(2)      ---   tgaaataatgtttatctatttatgacttagtataatatcataaataagtttccataacctttgcaatatataatgtttatttgaaatttctgaatttgat  15497900                                --------->YAB1                              <---------AHL20(2)             <---------TOE2(3) <---------YAB1                               --------->AHL20(2)       <---------YAB1 <---------ANAC55(1)                                   --------->AHL20(1)      <---------AHL20(1)      <---------ARR11(3)                           <---------AHL20(2)      <---------AHL20(2)      --------->ARR11(3)                           --------->AHL20(2)    <---------YAB1    <---------ANAC46                          <---------ICU4    <---------AHL20(2)<---------ANAC58                         --------->ICU4                       <   <---------AHL20(1) <---------ANAC58                       ---------->DOF2<---------AHL20(1)      - -------AHL20(2)    <---------AHL20(2)              ----------->HVH21    --------->YAB1             - ------>AHL20(2)<---------AHL20(2)    ---------->DOF2     ----------->RAV1(1)               ---------   tttaatattatttttaagttaattacttgtaatatcatattaaagctactatatgtgacacaacaaagattacaaaaataaattttccaaagtattgtca  15498000                                                           <<<<<<<<<GATA-1                                                          <-----------GT1                                                        <---------AHL20(2)               --------->ATHB12                      <--------ATHB1            --------->ANAC46                         --------->ATHB51          <---------ALFIN1                           <---------ICU4 ---------AHL20(2)                                   <---------AHL20(2)               ---------->DOF2 -------->AHL20(1)  <---------ANAC58                 --------->AHL20(2)          <-------TEIL -------->AHL20(2)  <---------ANAC58                <---------ATHB12        <---------AHL20(2) -->GT1 <---------ALFIN1                            <---------ATHB51       --------->YAB1           -   aataaaatacccacacttcattgcatcccttcattttgaagttttgtattttcaataatttatctatttccaaagaataaaaatgcataaaagttcgatg  15498100                                                                                                    <                                                                                                    -                                                                                                   --                                                                                                   <-                                                                                                -----                <---------TOE1(2)                                                               -----               >>>>>>>ZML2                                                                      ----- <---------At4g35610                                                          ------>ZmHOX2a(2) ----- <---------HSFB2a(1)                                         --------->ARR11(3)        <---------DAG2 --------->HSFB2a(1)                             --------->ARR14(2)         <---------ARR11(3)  ----- --------->HSFC1(2)                              <---------ARR14(2)     <---------ANAC58        <---- <---------HSFC1(2)               <------ZmHOX2a(2)          <---------ARR11(3)        <----------DOF2 ---------->ARR10       <---------MYB59       ------------>CBF          <---------ANAC58     --------   ggaagcttctccctgttctaggtttgcctaatttcgatcaaatttcagtccaatctggtctaaaatcttctgtttcttgatctctatcactttctctcac  15498200                                                      ------>ZmHOX2a(2)                                                     <------ZmHOX2a(2)                                                     <---------RVE1(1)                                                    <---------ARR14(3)                                                    <---------ARR11(3)                                                    --------->ARR14(2)                                                    <---------ARR14(2)                           <---                                                    --------->ARR11(3)                           <---     --------->MYB46(3)                             --------->ARR14(3)                           <--- <---------MYB52(2)                                <---------GLK1(1)                            ----- ---------At4g35610                                --------->GLK1(1)                          <------ -------->At4g35610                          <----------DOF2                                  <------ ----->TEIL                               <---------ARR14(2)         <---------YAB1           <------ ----------ARR10                         <------ZmHOX2a(1)    --------->MYB46(3)             <------- ---->ANAC58                          =======================HOX2a_HOX2a                  <---------ANAC58 ---->ANAC55(1)                       ======================HOX2a_HOX2a        --------->WRKY38(1)  < ---->ANAC55(2)                       <------ZmHOX2a(1)<----------DOF2--------->ATHB12 --------->DAG2 ---->ANAC46            =====================================HOX2a_HOX2a     --------->At4g35610<---- ---->ANAC58            ------>ZmHOX2a(1)====================HOX2a_HOX2a     <---------At4g35610<---- -----ANAC55(2)         ====================================HOX2a_HOX2a   <------MYB83---------->DOF2 --->HVH21            --------->YAB1*TSS ===================HOX2a_HOX2a   <------MYB46(1) <---------ANAC58   gcatctaaccactaatttcatctatcctgatgaaatatgaggaggaactttggagatcttttcaacaattgaagattggtgctgaccaaaaagcttgggt  15498300                                                       ---------->DOF2                                                    <-------GAMYB                                                   <---------MYB46(3) ---MYB46(1)                                       --------->MYB55(2) ---MYB83                                       <------MYB46(1) ------MYB46(3)                                 <------MYB83 ---->ALFIN1                                   --------->MYB46(2) ---ANAC46                                     <---------AtMYB61 ---ANAC58                                     <---------MYB46(3) ---ANAC58                                     --------->MYB55(2) --MYB46(3)      ----------->RAV1(1)           --------->MYB111(2)          --------->AtMYB61     --- -------TEIL <------NtERF2     <------ZmHOX2a(1)<---------ANAC46   --------->YAB1      --------->ANAC58 -----DEAR3(1) --------->At4g35610             --------->MYB111(1)<---------ATHB12     --------->ANAC58 -----AtMYB61--------->RAP2.3(1)             <---------MYB52(1) --------->WOX13(1)     --------->ANAC46   ggttcatcaagaggcgcagcaacaatttgagaaggaccatagactctgtttggtggttaaagggctcaatcacaaacaccaaaacctagacgctatgaag  15498400                                                     <---------YAB1                           ----------->GT1    ----------->HVH21               <------NtERF2--------->At5g28300 <---------DOF5.7(2)             <---------ANAC46               --------->At4g35610             <---------ANAC58               <---------At4g35610 <---------MYB52(1)             <---------ANAC58           xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        ---------->DOF2  <---------ANAC46 <-----------RAV1(2) <---------ZAT6 ------>ZAT14--------->ALFIN1           <------ZmHOX2a(1)     ----------->GT1   aacactcttccaaaggcgtggcatcttgagggtaaaattgaaggacaggtgaacgatgatggaactgttaatttctacttcgatactgaacatcatctac  15498500                                        <------MYB46(1)                                    --------->MYB55(2)                                   --------->ALFIN1                        <---------ALFIN1                                 <---------ANAC46                        --------->ANAC46                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ARR14(2)                          <----------DOF2                             <---------ARR14(2)                         <---------------AGL15                        <---------GLK1(1)                         --------->TOE2(3)                   <---------At4g35610                <----                         --------------->AGL15               <------NtERF2--------->LBD16       <----                      <---------CCA1(2) <------MYB83         --------->At4g35610                <----                   ------>ZmHOX2a(1)<---------MYB46(3)     <---------DEAR3(1)    <-----------ARR10<--              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   ------>ZmHOX2a(2)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   tcactgtcttagagaatggtccttatacctttaaggggtggatggtagtcatcgatcgtgggcagcgaatggaatccccaacttatcttcgcaaaattcc  15498600                                                                                                   <-          --------->ARR11(3)                                                                       --          --------->GLK1(2)                                                                        --          <---------ARR11(3)                                                                   ------     <------ZmHOX2a(2)    ------->TEIL                                                         ------ -----ANAC58      --------->At4g35610                                                         <------ -----ANAC58      --------->ZAT2                ----------->GT1                               ------- -----ANAC46      <---------ZAT2      ------>NtERF2                    --------->ALFIN1       <------ -------MYB52(1)  <---------At4g35610--------->ANAC46        <---------MYB46(3)             ---------   gttttggatcaaaatctttcagcttccgaacgtttatcgacgacatcaaattgttaagagtattggttcgaacttggggcaagtagaagaagttcagatt  15498700  Previous    Next  AGI:  At3g43573.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.7e-27 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus) Range:  from: 15498236    to: 15502936    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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