Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                -------                                                                               <---------ANAC58                                                                               --------->ANAC55(2)                   <---------MYB111(1)                                      <----------DOF2  <-------                   <---------MYB52(2)                                  <<<<<<<<<GATA-1   <---------GLK1(2)                 --------->MYB52(1)                                    <<<<<<<<<GATA-4  --------->YAB1    <xxxxxxxxxxxxxxxxsmallRNA(s)                                       <<<<<<<<<GATA-2  <--------ATHB1   ------>ZmHOX2a(1) --------->MYB52(1)                                <<<<<<<<<GATA-3 <---------YAB1  --------->TOE2(3)<---------MYB46(2)                              <---------ATHB12    <---------ATHB12 -----ZAT14    <---------MYB59  <---------ATHB12                 ------>MYB46(1) ----------->HVH21  < ---->ZAT14   --------->At4g35610  --------->ANAC58              ------>MYB83  <---------ANAC46     < -----ZAT18   <---------At4g35610  --------->ANAC58            <---------MYB59 <---------ANAC58 <---- ---->ZAT18<---------MYB52(1) --------->WOX13(1)        <-------TEIL --------->WOX13(1)--------->ICU4   gactcctcaatccattagctaactaacaaaatcaatcaagctatccctagacaatagattcaagaccaaatcaatccactttcgtgacaatgattctcat  15317900                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                              --------->YAB1      ---                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     XXXXXXXXXXXXXXXXXXXX>MIR863-5P                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <-----------GT1                                           <---------ATHB12                  <xxx -->YAB1                   <---------WOX13(1)                 ------>MYB83<xxxxxxxxxxxxxxxxsmallRNA(i) --YAB1     ------>ZmHOX2a(1)--------->YAB1             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxx ---------DAG2           --------->ATHB12  --------->DAG2     ------>MYB46(1) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ----------DOF2         <---------YAB1    ---------->DOF2    --------->WOX13(1)             xxxxxxxxx -----CCA1(2)   --------->TOE2(3)   --------->YAB1 <----------DOF2   ---------->DOF2<----------------   aactttataacttcctaatctcaattttcattgatgaaacataataaagcaggctttaaacaccaatctattaaagtcaataagcagtctaaacatccaa  15318000                                                                  --------->ALFIN1                                                                <------MYB46(1)                                                                <---------ANAC46                                                                <------MYB83           --------->GLK1(2)                                   --------->MYB111(2) ------>ARR14(3)                                               --------->MYB46(2) -------ARR11(3)                                               --------->MYB111(1) -------ARR14(3)                                               --------->MYB55(2) ------>ARR11(3)                                               <---------AtMYB61 xxxxxxxxxxxxxsmallRNA(s)                                      --------->MYB59 xxxxxxxxxsmallRNA(s)                                          --------->MYB52(2) xxxxxxx>smallRNA(i)               <------MYB83               <---------MYB55(1)  <---------ATHB12 -----WRI1<---------GLK1(2)        <------MYB46(1)           <---------MYB52(1) --------->GLK1(1)   ggtcttgggctagaatctacaaatctctgaaattagttggtttagacatttcataaaacacttgttaggtggagaaagtctgaaatcaattttcaattga  15318100                                                                                             ------>MYB83                                                                                             --------                                                                                             ------>MYB46(1)                                                                                           --------->AtMYB61                                                                                           <---------MYB59                                                                                     <xxxxxxxxxxxxxxx                                                                               --------->ARR14(2)                    <---------GLK1(1)                                          <---------ARR14(2)                    --------->GLK1(1)                                  ---------->DOF2   xxxxxxxxxxxx                   --------->ARR11(3)                             ---------->DOF2    --------->AtMYB61              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            --------->At4g35610   --------->TOE2(3)     --------->AHL20(2)  ------>ZmHOX2a(1) --------->AtLEC2    <---------At4g35610  --------->ANAC46   ----------->GT1 <---------ARR11(3)    --------->YAB1       --------->MYB59<------ZmHOX2a(1)>>>>>>> ---------->DOF2--------->YAB1          <---------ATHB12    <---------MYB52(1)--------->GLK1(1)   tcagaaagaaaatagcattaagaactcctaaaacagaagggaatcatgcatataaacacttagttagctaaagaaaagaggaatccacctaaacctaacc  15318200       <---------ARR11(3)  ------>ZmHOX2a(1) --------->TOE2(3)                                                                      <-------GAMYB ->MYB52(1)                                                                <---------YAB1   --------- xxxxxxxxsmallRNA(si3)                      <---------YAB1             <---------DAG2  --------->MYB111(2) xxxxxxxxxxx>smallRNA(fl3)         <---------ATHB12         *TSS  <------ZmHOX2a(1)    <---------MYB46(3) >>MYB98<---------GLK1(1)      ------------>CBF      <---------ALFIN1  <----------DOF2<--------P   catcctcaagaactctgaagaagactactcaagaacaatgaagaacatcatagaaccacatgagtgaaggaggctttttgattaagaggttgttgaaagt  15318300                                                                                    --------->ATERF1(1)                                                                                    <------NtERF2                                                                                  --------->DEAR3(1)                                                                                 <---------LBD16                                                                                 <------NtERF2                                                                                 --------->ATERF1(1)                                                                               --------->DEAR3(1)                                                                               --------->RAP2.3(2)                                                                              --------->ATERF1(1)                                                                              --------->ERF1                                                                              --------->DEAR3(2)                                                                              --------->RAP2.3(1)                                                                             <---------ATERF1(1)                                                                            --------->ARR14(2)                                                                      <---------ARR14(2)                                                                --------->ANAC58 --------->RAP2.3(1)                                                                --------->ANAC58------>NtERF2                                               <---------TOE2(3)--------->ANAC46<---------ATERF1(1) -                                               <---------TOE1(3)--------->ANAC55(1)<---------SPL7  <-                                     --------->DAG2      <---------GLK1(2)  <---------ARR14(2)    ---                                    --------->DAG2     <---------TOE1(3)  --------->LBD16      ------                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      --------->ANAC55(2)--------->LBD16<--             <---------ANAC58       ---------->DOF2   <-----------GT1 --------->ARR14(2)       <-----             <---------ANAC58      ---------->DOF2 ----------------------->TaNAC69(2)   <-----------ARR10 ->DOF2     <---------ZAT18----------->GT1 <----------DOF2      <---------ANAC55(2)<---------ATERF1(1)   aagttaagaaacagtgcgttttgctctgagggtgacaaaaaggcgatttagggttttaagcttctcacgcaagttccgaagccgccggaggctcttccgc  15318400                                     --------->MYB52(1)                                    <---------GLK1(1)                                   --------->ARR14(2)                                   <---------ARR14(2)                             --------->ZAT2                                                      <---                             <---------ZAT2                            <---------HSFB2a(1)     <-----                             <-------GAMYB                     <---------ANAC58               -------       <---------HSFB2a(2)   --------->At4g35610               <---------ANAC58              <------- -------->LBD16              <---------At4g35610               <---------ANAC46            ---------- --------ANAC46             <---------MYB46(3)                <------NtERF2           <---------LBD16 --->NtERF2               <------NtERF2                     --------->ALFIN1        --------->GLK1(2) --->At4g35610           ------------>AtMYB77      <---------ZAT6     ----------->ARR10<---------HSFB2a(2) -------LBD16          <------ZmHOX2a(1)   ----------->HVH21<---------DEAR3(1)  ----------------->AGL1 ----At4g35610      <-----------RAV1(2)   <--------P     <---------AtMYB61     <-----------------AGL1   tgcgggatgctggaagtttgagtcaggaggcagttgggataccggttgacatagtggtagaggtggcgagggaagagtcgtttcaaaatcgggaagaacc  15318500                                                                         --------->ZAT14                                                                         <---------ZAT14                                                                      --------->At4g35610                                                                     --------->ALFIN1                                                                   <------MYB46(1)                                                                   <------MYB83                                <--------P                        --------->MYB59                             <---------TOE2(2)                    --------->MYB111(1)       ---------                             <---------TOE1(3)                    --------->MYB111(2)       <--------                             <---------TOE1(2)                    --------->MYB46(2)        --------- -------DOF2         <---------ZAT14                         ---------->DOF2                <-------- ----HSFB2a(1)       <---------ZAT18                      --------->HSFC1(1)               <---------LBD16 >TEIL               --------->ZAT14                      <---------HSFC1(1)      <------ZmHOX2a(1) --ARR14(2)          --------->ZAT18   <-------GAMYB      --------->HSFB2a(2)   <---------TOE2(3) ->ARR10  ----------->GT1   <-----------RAV1(2)           <---------HSFB2a(2) ---------->DOF2   tttgagagaagaaggtgaaatagtgcaatctcaggttagggagttggctatgagcgagttcgagaaagtaggtgctgcagtaaaggattgtgttctggaa  15318600                                --------->LBD16                                --------->HSFB2a(2)                                ------>ZmHOX2a(1)                                <---------HSFB2a(2)                         <---------ANAC58           <---------MYB46(3)                         <---------ANAC58          --------->ALFIN1                         <------MYB46(1)         --------->ALFIN1                         <------MYB83     ---------->DOF2          --------->ANAC58     <---------LBD16   <---------ANAC58 >HSFC1(1)--------->ANAC58    ----------->RAV1(2)<---------ANAC58 -HSFC1(1)--------->ANAC46 <---------GLK1(1)     <---------ANAC46 >HSFB2a(2)             --------->MYB59 <---------AHL20(2) -HSFB2a(2)       ---------->DOF2      --------->AHL20(2)            ---------->DOF2         <------ZmHOX2a(1)   gttgattctgaaacgcaaaacaaagttgggtctcctggaaatttaaaaggagcgtgggtagtagcggtattgaaagggatagagatgaaaacagaggaaa  15318700                                                                     ------>ZmHOX2a(1)                                                                <---------GLK1(1)                                                                --------->GLK1(1)                                                               <---------ARR14(2)                          --------->MYB52(1)                   --------->ARR14(2)                        <---------MYB46(2)                     --------->ARR11(3)                ----------->RAV1(1)                            <---------ARR11(3)             ------->GAMYB------>MYB46(1)                     --------->HSFB2a(1)            --------->MYB46(3)                                <---------HSFB2a(1)                <---           ------>MYB46(1)------>MYB83                  <---------ANAC46                         <---           ------>MYB83 <---------MYB59              <---------MYB52(1)                   <---------TOE2(3)          ----------->RAV1(1)                       <---------RAP2.6(3)            <---------ANAC58          --------->MYB52(1)                  ---------->DOF2----------->ARR10     <---------ANAC58   tagatggtataccaacagcgacaataccaaacagtgtttttgatgaggcaaagccgttgtgggaagatttcctagttggaaagtttcttgctaaggctcc  15318800  Previous    Next  AGI:  At3g43357.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 9.3e-50 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus) Range:  from: 15318260    to: 15323494    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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