Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         <---------YAB1                                                                    <---------YAB1                                                                 --------->AHL20(2)                                                                 --------->AHL20(1)               --------->ANAC58                                  <---------AHL20(1)               --------->ANAC58                                  <---------AHL20(2)       --------->ANAC58                                          <---------ARR11(3)       ----------->GT1                                           --------->ARR11(3)       --------->ANAC58                                         --------->AHL20(2)       --------->ANAC46                                       --------->AHL20(2)   --------->YAB1         <---------TOE2(3)                 <---------AHL20(2) -------->WOX13(1)  --------->ICU4                          --------->AHL20(2)                    <-- --HSFB2a(2)  --------->DAG2            --------->ZAT6----------->GT1--------->YAB1               --- ->HSFB2a(2) ---------->DOF2   ----------->GT1      ---------->DOF2 <---------AHL20(2)   --------->YAB1   accaattacaagtaaaaaagcaatttttaagtttagaaaataacacaatttttccaaagtaaaaaaatatattataaatgacttctaccaagaatgaata  15230000                                                             --------->TOE2(3)                                                      <--------HAHB4                                                      <---------ICU4                                                      --------->YAB1                                                      -------->HAHB4                                                      --------->ATHB51                     --------->ATHB51                                                      <--------ATHB1                       -------->ATHB1                                                     <---------YAB1                       <---------AHL20(2)                                                     --------->AHL20(2)                   --------->ICU4                                                     <---------ATHB51                     <---------YAB1                                                     --------->ICU4                       --------->AHL20(1)                                                   --------->YAB1                         <---------ATHB51     <---------TOE2(3)                    <----------DOF2--------->AHL20(2)            <---------AHL20(2)  --------->AHL20(2)                      <---------DAG2 <---------AHL20(2)            --------->AHL20(2) -------------AGL15             <----------DOF2   <---------YAB1         --------->AHL20(2)--------->ATHB12 ------------>AGL15            <---------ICU4   --------->YAB1      <-------TEIL      --------->AHL20(2)   caaatttaagaaaaacaaacaatattagagtcatcttttctaaactttttttataataattaatcttagattcatatatataagtttataaaattattga  15230100                                                                                            <--------                                                                                           <---------ZAT18                                                                                           <---------ETT(2)                                                    --------->TOE2(3)                      <---------WRKY12                                             <---------AHL20(1)                         ------->GAMYB                                             --------->AHL20(1)                   <-----------GT1              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<---------ARR11(3)           <---------ICU4  --------->YAB1                          --------->AHL20(2)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------YAB1                <---------GLK1(2)  --------->ARR11(3)      ------------>CBF <---------WRKY38(1)   cttatgatatagatgagaccatatgtttacatagaattttcaaaaaaaatattatcttattagtttatagatttgtatcaatttttacaacggtccaccc  15230200                                                                                                <----                                                                                           xxxxxxxxxx                                                                                           <xxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                      <--------------                                                                                      ---------------                                                                                   <---------AHL20(2)                              <--------P                         <------------CBF --------->ARR11(3)                            ----------->GT1                    <---------AHL20(2) <xxxxxxxxxxxxxxxxxx              <-----------GT1--------->At5g28300               --------->AHL20(2) <---------ARR11(3)    ----------->GT1  <---------AHL20(2)          <---------AHL20(2)               <---------AHL20(1)   <------ZmHOX2a(2)<-----------TBP     <---------At5g28300 --------->ARR11(3)   <---------CCA1(2)  x -ALFIN1     --------->AHL20(2)        <-----------GT1      <---------ARR11(3)  ------->TEIL  xxxxxxx   ttgagatcgaaaaaatttactaatttataggggtaactaatttaccgctattaacttatagagattttattgtatatcaacgtatatatttgtacgagct  15230300                                                                --------->ANAC46                --------->ALFIN1                                --------->ANAC58               <xxxxxxxxxxxxxxxxsmallRNA(i)                     --------->ANAC58             --------->ATHB12                                  --------->ZAT18         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              --------->ANAC58     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                   --------->ANAC58               <xxxxxxxxx     <---------YAB1   --------->bZIP60(1)               <------ZmHOX2a(1)                 xxxxxxxxxxx   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)<xxxxxxxx ------DOF2------->TEIL                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxx>smallRNA(i2)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <xxxxxxxxxxxxx xxxxxxxxxxxxxsmallRNA(i2)                 <-------TEIL <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<xxxxxxxx xxxxxxxxxxxxsmallRNA(i2)  ------>ZmHOX2a(1)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        ------->TEIL -AtSPL8xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <xxxxxxxxxxxxxx >AtSPL8xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <---------ATHB12 xxxxxsmallRNA(le3)   <---------bZIP60(1) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   ------->TEIL   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<---------- xxxxxxxxxxxxxxxx>smallRNA(i2)  xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     <---------ARR11(3) --------->WOX13(1)   ttgcattttgatgaatcagtggtgatgtcctatgggttatgaagcttcataactcataggacaagcacacaagataaatatgctaatgaatccatcagtc  15230400                                                        --------->ARR11(3)                                                        --------->AHL20(1)                                  <---------RVE1(1)     <---------AHL20(1)                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                         --------->ANAC58  ------>NtERF2<---------ARR11(3)                ------------>CBF  <---------CCA1(1)     <---------AHL20(2)               --------->ANAC46  --------->AHL20(1)     --------->AHL20(2)               --------->ANAC58  --------->ARR11(3)   <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)---------->DOF2             ---------->DOF2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <xxxxxxxxxxxxxxxxsmallRNA(i)    <xxxxxxxxxxxxxxxxsmallRNA(i) <---------ARR11(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxsmallRNA(i2)--------->ANAC58 <---------ANAC46                 ------->GAMYB xxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           ----------->RAV1(1) xxxxxxxxxxxxxxxsmallRNA(fl3)---------->DOF2       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxsmallRNA(i)--------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     --------->MYB52(1) xxxxxxxxsmallRNA(i)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          ------>ZmHOX2a(2)            -- xxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<----- xx>smallRNA(le3)  <------------CBF <---------YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxx -HVH21    <----------DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <----------DOF2  xxxxxxxxxxxxxxxxxxxx   gagtcttggaagcctttaagcaattggaagcaaaagatattatggcgactatcgctaatatattgactttgatccaacagaactatcccaaagctcgtat  15230500                                                                         xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                       --------->ANAC58                                                                       --------->REM1(1)                                                                       --------->ANAC58                                                                      --------->SPL7                                                                      --------->ZAT18                                                                      <-------TEIL                                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 --------->AHL20(2)               --------------->AtSPL8           <x                                 <---------AHL20(2)               <---------------AtSPL8          <--                          --------->ALFIN1     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             <xxx                        <xxxxxxxxxxxxxxxxsmallRNA(i)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  --------->ALFIN1                  xxxxx                        <---------ANAC46       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            <xxxxx                       <---------ANAC58       xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)               <xxxxx                       <---------ANAC46      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             <xxxxxx                       <---------ANAC58      ---------->DOF2 <------ZmHOX2a(1)<----------DOF2 xxxxxxx                      <---------LBD16      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             <xxxxxxx                 <---------ARR11(3)   --------->DAG2       <---------TOE2(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           <xxxxxxxx ----->TEILxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->YAB1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ----TOE1(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <<<<<<<<<MYB98x xxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <------ZmHOX2a(1)  <---------TOE2(3)- xxx>smallRNA(i2)--------->ARR11(3)  ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   ---------   gaatttgagaacattgctagatattgcggtggaaattaaaaaagtcacaaagcataacattgaggaggagggtacaccatctttttatgttactcaaagg  15230600                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                      <---------GLK1(2)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                <-------TEIL            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <---------ATHB12xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                      --------->ANAC46 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                        <-----------GT1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------P  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                   <---------ANAC55(1) xxxxxxxxxxxxxxxxxx>smallRNA(i2)                                   --------->ANAC55(2) xxxxxxxxxxxxxxxxsmallRNA(i2)                                      <---------ANAC46 xxxxxxxxxxxxxxxxxxsmallRNA(i2)                                    <---------ANAC58                -- xxxxxxxxxxxxxxxxxsmallRNA(i2)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)xxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxx>smallRNA(i2)              --------->YAB1       <---------MYB52(1) <xxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxsmallRNA(i2) <---------At4g35610<---------GLK1(2) <---------ANAC55(2)     <-------TEIL xxxxxxxxxxxxxxxsmallRNA(i2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(i)       <x xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxx -------->At4g35610 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    ------------>AtMYB77 --------->ANAC46   <x ->DOF2<xxxxxxxxxxxxxxxxsmallRNA(i)      ------->TEIL<---------YAB1<---------ANAC58xxxxxxxxxxxxxxxxxx   gtagcacaaatcaatagtttcatagatacttctgctcttgatgaatcaaaagattatcaaacagcagttacctgttttatccacaatactaggtacttgg  15230700                                                                                                    <                                                                                                  ---                                                                                                  <xx                                                                                               ------                                                                                              xxxxxxx                                                                                             <------ZmHOX2a(2)                                                                                             <xxxxxxx                                                                                            <--------                                                                                            ---------                                                                   <---------ARR14(2)       <--------                                                                  --------->GLK1(1)         ---------                                                                <---------ANAC58            ---------                                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<----                                                           --------->CCA1(2)                xxxxxxxxx ------>MYB46(1)                                          --------->ARR14(2)               --------->GLK1(1) ------>MYB83                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------GLK1(1)    xxxxxxxxxxxxxx ------->AtMYB61           --------->YAB1         <---------AHL20(2)            ====================HOX2a_HOX2a >smallRNA(fl3)        --------->AHL20(2)         --------->AHL20(2)       --------->HSFB2a(2)xxxxxxx xxxxxxsmallRNA(i2)    <---------AHL20(2)     --------->ATHB12  <---------ANAC58<------ZmHOX2a(1)<xxx xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      --------->ATHB12<---------ARR14(2)    =====================HOX2a_HOX2a x>smallRNA(fl3) --------->YAB1  <---------AHL20(2)    --------->YAB1      <---------HSFB2a(2)------>ZmHOX2a(2) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  ----------->GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------GLK1(1) xxxxx>smallRNA(fl3)<---------ICU4 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------LBD16<------ZmHOX2a(1)   accaactcaaaatacttgttcataatttatcagatttaaaaggtttattgattaaaatcatatatggggtatctcttctggaggaaacagaggagatcta  15230800                                                                                       xxxxxxxxxxxxxx                                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <xxxxxxxxxxxxxxxxsmallRNA(si3)                            --------->GLK1(2)    <xxxxxxxxxxxxx        xxxxxxxxxxxxxxxxxxx>smallRNA(i2)      xxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <---------ANAC58                     <------ZmHOX2a(1)      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      xxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxx ------>YAB1  <---------DAG2             xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<-------GAMYB xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ALFIN1        xx --->WOX13(1) <----------DOF2          <---------ANAC46   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)--------- xxxxxxxxxxxxxxxx>smallRNA(fl3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxsmallRNA(fl3)        --------->ALFIN1    <---------YAB1   <---------ANAC58xxxxxxxxxxxx -ARR11(3)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  --------->At5g28300     <---------ANAC46xxxxxxxxxxxx >ARR11(3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------RAP2.6(3)     <---------ANAC58xxxxxxxxxxxx -ARR14(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------ANAC46 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) >ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <---------ANAC55(2) --------->ATHB12 xxxxxxxxxxxxxxxx >AGP1<---------ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <---------GLK1(2)   xxxxxxxxxxxxxxxx -------HVH21xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->LBD16xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxx>smallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxx>smallRNA(fl3)       <-----------RAV1(2)<xxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->GLK1(1) xxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(i)   xxx xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxx>smallRNA(i)   tcagagatgcttggcactttttgccttgatgcatcagggtggagaggatgccgtaaatgtcattgtagaatctttgggtgttgagagttccatgatacac  15230900  Previous    Next  AGI:  At3g43260.1    Description:  similar to PBS lyase HEAT-like repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G62530.1) Range:  from: 15230442    to: 15232711    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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