Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       <---------ALFIN1                                                                                --------->ARR14(2)                           --------->GLK1(1)                                    <---------ARR14(2)             <-----------HVH21                                                 <---------MYB52(1)             <-----------TGA1                                                <---------ANAC58     <--            <---------ANAC58                     <----------DOF2             <---------ANAC58     ---            <---------ANAC58             ------>ZmHOX2a(1)         <---------ATHB12 <---------ZAT18 ------>REM1(1)            <---------GLK1(1)------->TEIL  <----------DOF2<----------DOF2      -------   tcatctcgagcatagcgtcagtttgtgagatttccaacgagtcctgaacctctttgatttcttttgctaatgagtctttccgtttctgcacatctccaaa  15188100                                      <---------ZAT14                                     <-----------HVH21                                 --------->ANAC58                                 --------->ANAC58                             --------->LBD16            <---------MYB52(1)                   --------       <-----------GT1      --------->ANAC46           <-------GAMYB                       ------>ZmHOX2a(1)     <---------ICU4         --------->ANAC58          ----------->GT1                     --------->TOE2(3)    --------->ICU4          --------->ANAC58          <---------MYB46(3)              --------->GLK1(1)    <---------YAB1          --------->ANAC55(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   --------->TOE1(3) -------ARR11(3)           --------->MYB46(3)  <-----------RAV1(2)                    <---------GLK1(1) ------>ARR11(3)           <---------LBD16   <-----------HVH21                      <---------GLK1(2) --->DOF2               <-----------GT1      <----------DOF2    ------>ZmHOX2a(1)  <---------At4g35610   gacctcattattccacttcttcaatttcacccgcaacgccttcagtgcttcaggggtcgttaagtccttctgccaagaagttgtcagcatctccttaaag  15188200                           --------->ANAC58               --------->At4g35610               <---------At4g35610                                                            ------>ZmHOX2a(2)               <---------ZAT2                                                                 =======              ------>MYB46(1)                                         --------->At4g35610   <-------- --------->YAB1--------->ZAT2                                  --------->LBD16              --------- <---------ANAC58   --------->TOE2(3)                        <---------LBD16       <-----------RAV1(1) <---------ANAC58 ------>NtERF2                           --------->At4g35610  --------->ARR14(2) -->DOF2      ------>MYB83 --------->ANAC58               <---------At4g35610  <---------ARR14(2)<---   ctatcgtgagataaccaagctgcctcaaaacgaaatggccttctacttggattacctctcatctccggactcagttgtacatatactggggcatgatcta  15188300                                                                     <---------MYB52(2)                                                                   ---------->DOF2                                                                 <---------ZAT14                                                            --------->ZAT14                                                            --------->ZAT18         ------->GAMYB      <------ZmHOX2a(1)                                <---------ANAC58            --------->MYB46(3) ============HOX2a_HOX2a          <---------ANAC58     <---------ANAC58           ------>MYB83 -ARR11(3)         <---------At4g35610      --------->At4g35610  --------->ZAT14  -------->P >ARR11(3)  ---------->DOF2       <---------ANAC58     <---------ANAC46           ------>MYB46(1) ------TOE2(3)     --------->At4g35610 ------>ZmHOX2a(1)    <---------ZAT14    --------->MYB46(3)   aggtctgaggagaagaaaggcagatgtgaaacacttgcttcctgccatctcaaccttgtgtgagcactgcaaagaaccctatccaaccgcttagcaatat  15188400                         ====================RAV                         ----------->RAV1(2)                         --------->At4g35610                         <---------ZAT2                         <---------At4g35610                        ------>NtERF2                       <---------ALFIN1                     --------->LBD16                     <---------ATERF1(1)                     <-----------HVH21                     ------>NtERF2                    --------->ANAC58                          ------->GAMYB                    --------->ANAC58                         --------->ANAC58                       -                    --------->ANAC46                   --------->WOX13(1)                           -                   --------->SPL7                   --------->ARR14(2)                           <---                 <---------ALFIN1  ---------->ID1   <---------ARR11(1)                           ----             ------>NtERF2       <-----------RAV1(1)<---------ARR11(3)                           ----         <---------ALFIN1--------->O2              <---------CCA1(2)      <-----------GT1       *TSS-       <---------ALFIN1--------->DEAR3(1)         XXXXXXXXXXXXXXXXXXX>MIR775                  <------     ------>NtERF2<---------ATERF1(1)        ------->TEIL    --------->ANAC46          --------->GLK1(1)    --------->ANAC46--------->DEAR3(1)      <-----------GT1  --------->ANAC58    --------->ARR14(2)<-   aagtttgcgccactctgcccctccgccacctgaatttgttgccattgaaccccatatctatcaacgccatctcatttatccagtttccgaactccaatga  15188500           --------->YAB1         ------>MYB46(1)        --------->WOX13(1)      ------------>CBF                                                                   <---------ATHB12 --------->LBD16                                                                      <---------AHL20(2) -------->ANAC58                                                                     --------->AHL20(2) -------->ANAC58           --------->AHL20(2)                                    --------->ARR11(3) ------ARR14(2)            --------->YAB1                   <---------ARR11(3)   <---------ARR11(3) ----->ARR14(2)       ------------>CBF                      --------->AHL20(1)   --------->AHL20(1) --->TEIL------>MYB83--------->TOE2(3)               --------->WOX13(1)          --------->ICU4 -------->ANAC46 <---------AHL20(2)  --------->TOE1(3)      <---------AHL20(1)   <---------AHL20(1) ---ATHB12<---------ATHB12<---------ATHB51  --------->MYB52(1)          --------->ARR11(3) --------LBD16  --------->AHL20(2)   --------->TOE2(3)  --------->YAB1  <---------ARR11(3)<---------ICU4   atccgcaaaccaatcatatttaatctcaattatagaaaaccttaacaaactgcataaatcaaaatatttcaaaagatttcgaaaatattaaatcattttt  15188600                                                                         <-----------GT1                ----------->GT1                                          --------->AHL20(2)              <---------ANAC46                                        <---------ICU4              <---------ANAC58                                        --------->YAB1             <---------LBD16                                         <---------AHL20(2)            <-----------GT1                              --------->AHL20(2)     <---------DAG2        --------->AHL20(1)                              <---------AHL20(2) --------->ANAC55(2)        <---------AHL20(1)                  --------->YAB1         --------->TOE2(3)  <-----------RAV1(1)        --------->AHL20(2)         --------->ANAC46     --------->AHL20(2) <---------ANAC55(2)  <-------TEIL<---------ANAC58 <-----------GT1        --------->YAB1 --------->AHL20(2) ---------->ID1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->AHL20(2)  --------->AHL20(2)  <----------DOF2   cagattcaaatattttacgggtgaaacatatttttacacaaaataaacataaactaaaataaataaaaacattaattacatactttttttgttgtataca  15188700                              <---------AHL20(2)                              --------->AHL20(2)                              --------->ATHB51                              <---------ICU4                              <--------ATHB1                             --------->ICU4                      <-----------GT1                 <---------ICU4   --------->AHL20(2)                 --------->YAB1   <---------AHL20(2)                 <---------AHL20(1)   --------->AHL20(2)                 --------->AHL20(2)   <---------AHL20(2)                               --------->AHL20(2)                 --------->ATHB51--------->AHL20(2)                            <---------WOX13(1)                 <--------ATHB1  --------->AHL20(1)             <---------ANAC58 <------MYB83                <---------ATHB51 <---------AHL20(2)             <---------ANAC58 <------MYB46(1)                <---------ATHB12 <---------AHL20(1)         ---------->DOF2   <------------CBF           --------->TOE2(3) <---------YAB1           --------->LBD16        --------->ATHB12       <---------AHL20(2)  --------->YAB1           <---------LBD16         <---------YAB1    <------      --------->AHL20(2)--------->ANAC55(2)       <-----------GT1      <---------YAB1  <---------AHL20(2)   aacaaatattaaatctcaataattttacataataatttattttaatggttttattccgcacataatgcgagttattatctgattggtgtttaatttctca  15188800                                                                             -------->HAHB4                                                                             <---------ICU4                                                                            --------->ICU4                                                                            <---------ATHB12                                     <-----------HVH21                      <---------YAB1                                >>>>>>>>>ARR1                    ------>ZmHOX2a(2)                                >>>>>>>>>ARR1                   <---------RVE1(1)                         --------->ATHB12                       <------ZmHOX2a(2)                         --------->YAB1                        <---------ARR11(3)                        <---------YAB1                         --------->ARR11(3)       <---------DAG2              <----------DOF2   <------------CBF    <---------AHL20(2)     <---------TOE2(3)            <----------DOF2     >>>>>>>>>ARR2       <---------YAB1<----------DOF2       <----------DOF2           <---------ANAC58     >>>>>>>>>ARR2      --------->AHL20(2) <---------YAB1 ------>MYB46(1)           <---------ANAC46    <------ZmHOX2a(1)----------->TBP--------->AGP1--------->YAB1           <---------ANAC58   <---------YAB1<---------ANAC46  <---------GLK1(1)      ------>MYB83 ---YAB1  ---------->ID1--------->ICU4 <---------bZIP60(2)    --------->GLK1(1)    <---------MYB59  <   ttagatagttttggcgtttttgggttatgattaggattgtgtcatggcctatatataatagaagagatctttatgctaatgataacccaacttttgcaaa  15188900              --------->AHL20(1)        <---------YAB1              --------->AHL20(2)        <---------AHL20(2)     --------->HSFB2a(2)              <---------AHL20(2)    <---------DAG2             ------>ZmHOX2a(1)         --------->AHL20(2)         <----------DOF2            --------->LBD16       <-----------HVH21         <---------AHL20(2)      <-----------GT1               <---------HSFB2a(2)  <------MYB83   <------------CBF           <---------ICU4                  <---------LBD16       <------MYB46(1) <---------TOE2(3)           --------->ICU4              <----------DOF2         <---------MYB52(1)<- <---------YAB1           <------ZmHOX2a(1)              <---------DAG2         --------->ZAT2<------ -----------GT1         <---------TOE2(3)               <---------DAG2          <---------ZAT2-------   attaacattgtttaaattttttgtttgaggaaatattactttataatttgttatcttcccttttcctggaagtatttagctctgctaggtcatacaacgt  15189000  Previous    Next  AGI:  At3g43175.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 5.4e-49 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus) Range:  from: 15184876    to: 15188496    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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