Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    --------->CCA1(2)        ------>ZmHOX2a(2)       <------ZmHOX2a(2)      <---------AGP1      <---------ARR14(2)      --------->AGP1      --------->ARR11(3)                                  --------->AHL20(2)      <---------ARR11(3)         ---------->DOF2          <---------AHL20(2)                      ---     <---------CCA1(2)    <----------DOF2                 --------->AHL20(1)             <------ZmHOX2a(1) ---->YAB1       <---------ARR11(3)                      --------->AHL20(2)          ------>ZmHOX2a(2)   aaaatgtagatctaaacaagataaacaactttgctcaaagaactaaatgcaaaaaaaaaaaaaattaagagtaatctatacatttgatcgaggaagaaga  15140100                                                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                        --------->ZAT18                                                              <---------ARR14(2)                                                              --------->ARR14(2)                                                             <------ZmHOX2a(1)               <-------                                                             ===========================HOX2a_HOX2a                                                          <---------LBD16--------->ANAC46   ---------                                                   <---------ANAC58     <---------ZAT14    <---------                                    <----------ID1 <---------ANAC58    --------->AtMYB61  <----------ID1                                  ---------->DOF2  <---------ANAC46    <---------ALFIN1   -----------                       --------->HSFB2a(2)      ----------->TGA1--------->MYB46(3)   ---------->DOF2                       <---------HSFB2a(2)      ----------->HVH21    ------>NtERF2----------------->AGL1            ---------->DOF2  ---------->DOF2  <---------ANAC55(2)   ------>NtERF2==================== -------->GT1     --------->At4g35610         --------->ANAC55(2) --------->LBD16<------ZmHOX2a(2)   tgctaaattagtagcaaagcatcttccagcaaaaagaaaagacaaaaaacgtgacgtttatcaggaaccgcgaccacactacgatccaaaagaggtcaaa  15140200              --------->ETT(1)             ---------->ID1       <------ZmHOX2a(2)      <---------ARR11(3)    --------->HSFB2a(1)                       ------->GAMYB                        <------NtERF2    <---------HSFB2a(1)                      --------->MYB46(3)                   ----------->GT1   <---------KAN4(2)                         <---------MYB55(2)                  --------->ALFIN1 ==============HOX2a_HOX2a                  ------>MYB46(1)                   <---------TOE1(3) <------ZmHOX2a(1)                          ------>MYB83                      <---------AtMYB61 =============HOX2a_HOX2a                   -------->P                <---------ALFIN1 --WRKY12<----------DOF2           ------>MYB46(1)         <---------ETT(2)   <---------TOE2(3) >WRKY18(1)<-----------RAV1(1)     ------>MYB83        <---------ETT(2)   <-------GAMYB --HVH21------>ZmHOX2a(2)         --------->WOX13(1)   --------->ETT(2)   --------->At5g28300 >GT1 --------->ARR11(3)      <-----------GT1<---------ATHB12        <---------REM1(2) =======HOX2a_HOX2a   <---------GLK1(2) --------->ANAC46   --------->ETT(2)   --------->DAG2   cgaggaacgatctttgtcgcaatggattctaaataccaatctccccaaccatcgatgtcgatcgacattgctacacggttaaggtggctaattcgtttct  15140300                                                                                                <----                                                                                                <----                          <-----------GT1                                                       <----                       <---------AHL20(2)                                                       <----                       --------->ATHB51                                                         -----                       <---------ICU4                                                  ----------->GT1                       --------->AHL20(2)                                 <---------LBD16      <-----                      --------->ICU4                  <------ZmHOX2a(1)  --------->ALFIN1      <-----                    <---------ICU4              --------->ZAT6      xxxxxxxxxxxxxxxx>smallRNA(s)-----                   --------->ICU4             <-----------GT1--------->TOE2(3)     ---------->DOF2            --------->AHL20(2)          --------->TOE2(3) ----------->RAV1(1) --------->ATERF1(1)  <-   ccaagtatttcaaatcaaatactaattatttcgacttctctagcttaataactctaggaacaacattatctaagtctgggggagccaaagggtaaccata  15140400    <----------DOF2 -----ARR14(2) -----ARR11(3) -----ARR11(1)                                    <---------ANAC58 -------ARR10           <---------ANAC46          <---------ANAC46 ---->ARR14(2)          <---------ANAC58          <---------ANAC58               <----------DOF2 ----ARR14(1)           <---------ANAC58          ----------->GT1             --------->ARR11(3) ----CCA1(2)           ---------->ID1       <---------AHL20(2)                <---------ARR11(3)   <- ---->ARR11(3)     <---------ANAC58         <---------YAB1        ---------->ID1------>ZmHOX2a(2)  <- ---------DOF2     <---------ANAC58  <---------TOE2(3)      <---------YAB1--------->YAB1           <-   tcttttcttttcttaagtcagtcgtgtcgtttttagatttatgttttttattgagtgaaattttgtttgtctccaattttgatctttctctcgagtttat  15140500                                                 ----------->RAV1(2)                                               --------->ARR11(3) --------->AHL20(1)          <-----------GT1                      --------->ARR14(2) --------->AHL20(2)          --------->MYB52(1)                   <---------ARR14(2) <---------AHL20(2)      -----------        <---------WOX13(1)       =========================HOX2a_HOX2a           <-------TEIL    <--------P<-----------HVH21  ------>ZmHOX2a(2)                <---------AHL20(1)--------->ATHB51    <---------WOX13(1)          <---------At4g35610------>ZmHOX2a(1)       <------ZmHOX2a(1) --------ANAC46      <---------GLK1(2)    ----------->GT1        <---------ATHB12   <---------ICU4 --------ANAC58      --------->ARR14(2)  *TSS  --------->GLK1(2) --------->AHL20(2)<---------MYB52(1) --------ANAC58      <---------ARR14(2)--------->MYB52(1)    ------------>CBF--------->GLK1(1)   tgcctggttgattaactgttacagatttgattcgatctgactaatggaaaatcctgagggcaaaccaataaattagaggacatccattattccaacatat  15140600                                      ------>ZmHOX2a(1)                               <----------DOF2                            ---------->ID1                                               <---------ICU4    ---------->DOF2      <----------DOF2                                                --------->ICU4 --------->TOE2(3)       <---------DAG2                        --------->ARR11(3)     --------->YAB1 >RAV1(1)  <---------At4g35610 <---------DAG2         <---------ZAT6                 <---------YAB1   aatccataaagagagctaatctcactgcttttcctttttcctcgtcaaaaatgttagtgttcatagaacttgactccttgttcatatatgataatgagac  15140700                                                                                                    x                                                                                                   xx                                                                                                  <xx                                                                                               xxxxxx                                                                                               <-----                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                             xxxxxxxx                    <----------DOF2                                                         ---------              <-----------GT1                                                              <xxxxxxxxx         <---------GLK1(2)               ----------->GT1                                 <xxxxxxxxxxx         --------->ARR11(3)        <---------TOE2(3)                                   <-----------GT1         <---------ARR11(3)        --------->MYB59                             <-----------GT1xxxxxxx       ----------->ARR10     <---------YAB1                               <----------DOF2<xxxxxxxxxxx   tgatatacctagattttcactgcttttagctatgatttaggtatagttttaagagtcattttgttatttgtagagtcttttctactatttttcaggtctt  15140800                      --------->ICU4              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             ------->TEIL            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           <-------TEIL          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ATHB12    --------->GLK1(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                              <---------At4g35610 xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               <------NtERF2                  ---- xxxxxxxxxxxxxxx>smallRNA(le3)                                 <------NtERF2                <------MYB46(1) -----DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               <---------RAP2.3(1)           <------MYB83 xxxxxxxxxxxxxxxx>smallRNA(se3)      <xxxxxxxxxxxxxxxxsmallRNA(i)--------->RAP2.6(2)       <---------TOE2(2) xxxxxxxxxxxxxxxx>smallRNA(fl3)    <---------HSFB2a(2)   <---------At4g35610               <---------TOE1(2) xxxxxxxxxxxxxxxx>smallRNA(le3)    --------->HSFB2a(2)   <---------ZAT2                 <---------ANAC58 xxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------LBD16             <---------ANAC46 >ARR11(3)xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         --------->At4g35610  --------->ANAC58  <---- xxxxxxxxxxxxxxsmallRNA(fl3)     <xxxxxxxxxxxxxxxxsmallRNA(s) ------>NtERF2   --------->ANAC58------- xxxxxxxxxxxsmallRNA(si3)        <xxxxxxxxxxxxxxxxsmallRNA(i) ----------->RAV1(1)       <---------ANAC58 xxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxsmallRNA(i)--------->At4g35610        <---------TOE2(3) xxxxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxsmallRNA(i)--------->ZAT2      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   tacatgtttgggatgcatttggagattatggagcattctggagcaaaacagacaacttaagctgcggcagcaattcggagacggaaattgacgtaggtgt  15140900                                                                                            ---------                                                                                            <--------                                                                                         ------>NtERF2                                       <---------ETT(2)                             --------->ARR14(2)                                       <---------bZIP60(1)                      <-----------------AGL2                                     --------->MYB52(1)                         <-----------------AGL1                             --------->AtMYB61                                  ----------------->AG                          <---------bZIP60(1)                                   ----------------->AGL1                   <---------ANAC46 ----------->TGA1                         --------->GLK1(1)    <--                   <---------ANAC58 ----------->HVH21<---------ANAC46        <---------GLK1(1)   ----    --------->ANAC46   ----------->HVH21             <---------ANAC58       --------->ARR14(2)   ---- <---------ETT(2)  <---------ANAC58<xxxxxxxxxxxxxxxxsmallRNA(i)  <---------TOE2(3)  <---------ARR14(2) ----->ETT(2)     <------NtERF2   ----------->RAV1(2)<---------ANAC58       <---------ARR14(2)   <--- --NtERF2       <---------ANAC46  --------->ANAC55(2)<---------ANAC55(2)    <---------ARR11(3)   <--- -->ALFIN1 ----------->RAV1(2)    <---------ANAC55(2)--------->ANAC55(2)    --------->ARR11(3) <-----   cgatcgacacaacccctggtgtcgagtgacaccaatacctgacgacaattcaattgcgtaacttattgatgttttgaagatttccaaattcggcccagaa  15141000  Previous    Next  AGI:  At3g43144.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 5.9e-97 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family) Range:  from: 15135169    to: 15140541    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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