Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             <---------ARR11(3)              --------->ANAC58        ---------->DOF2            <------           --------->ARR11(3)   --------->CCA1(2)             <---------ARR11(3)             --------  --------->ANAC58             <---------ARR11(3)      <---------ARR11(3)                    <-------  --------->ANAC58             --------->ARR11(3) --------->WRKY18(1)    <---------LBD16   <---------GLK1(1)  --------->ANAC46         ---------->DOF2 --------->ANAC58   <---------ARR14(2)   <---------YAB1 --------->DOF2       --------->MYB52(1)----------->HVH21     --------->ARR14(2)  <---------ARR11(3) ------>ANAC46        ---------->DOF2   --------->ANAC46<-----------GT1--------->ARR11(3)  --------->GLK1(1) ------>ANAC58       ------>ZmHOX2a(1) --------->MYB46(3)    <---------CCA1(2)    --------->ARR11(3) ------>ANAC58     --------->YAB1      --------->DEAR3(2) ----------------->AGL1 --------->YAB1    <-   actcaagccaaaacatctcaatcctaaaggaaagatatagacccgacgcatggtcaagataccatatctgaaagacctggaaatgatatttggaaatcat  15042200                                                                 <------NtERF2                                  --------->ARR11(3)            <---------ATERF1(1)                                  <---------ARR11(3)            ------>NtERF2                                  --------->GLK1(2)            --------->DEAR3(1)                                  --------->ARR14(2)           <---------ATERF1(2)   --------->ARR14(2)             <---------ARR14(3)     --------->YAB1   <---------ARR11(3)             <---------ARR14(2)     <---------ICU4   --------->ARR11(3)       --------->HSFB2a(2)          --------->ATHB12   <---------ARR14(2)  --------->ARR11(3)          --------->ARR11(3)        <----------ID1  <------ZmHOX2a(1)    <---------ARR11(3)    --------->ARR11(3)--------->ATERF1(2) ---ICU4          ----------->GT1 <-----------ARR10<---------ARR11(3)---------->DOF2         -------- ->ICU4 <-----------GT1--------->GLK1(2) <---------At4g35610   --------->RAP2.6(2) --------->ARR14(2) --ATHB12 <----------ID1    <---------HSFB2a(2)---------->DOF2<---------RAP2.6(2)  <---------ARR14(2) --------LBD16---------->DOF2     --------->ARR14(3)    <---------YAB1  --------->YAB1       <-------   ttcaggatattaacaacaaagagaaaatctcgagaaaatcttcagaagataaagatttatcattgccgcctcaaagataacaacaaatctcccaagaata  15042300         --------->At4g35610         <---------At4g35610         <------NtERF2        <---------ATERF1(1)        ------>NtERF2        <---------ERF1        <---------DEAR3(2)        <---------RAP2.3(1)        <---------ORA47(2)       <---------RAP2.6(2)       <---------DEAR3(1)       <---------RAP2.3(2)      --------->ATERF1(1)                                            <xxxxxxxxxxxxxxxxsmallRNA(i)     --------->ALFIN1                                     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <---------ATERF1(1)               >>>>>>>>>NAM    --------->ANAC58  --------->ALFIN1       ---------->DOF2               <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ->YAB1<---------RAP2.3(3)     --------->At4g35610     --------->ANAC58              --------->YAB1 < --GLK1(2)   ---------->DOF2  ------->TEIL        <---------------AtSPL8     <-----------RAV1(2)-----   tcgcgaggggcggctcaaagccttatataaagcacctcaagggatgagagaaggggcacgcacaaaaacgctctcaacttcaggctataaaaaacgctct  15042400                                                                                             --------                                                                                          <------NtERF2                                                                                          --------->At4g35610                                                                                          xxxxxxxxxxx                                                                                          <---------At4g35610                                                                                          <---------LBD16                                                                                          --------->LBD16                                                                                         <xxxxxxxxxxx                                                                                        --------->SPL7                                                                                        <---------DEAR3(1)                                                                                        xxxxxxxxxxxxx                                                                                      --------->ORA47(1)                                                               <---------YAB1         <xxxxxxxxxxxxxx                                   <---------ZAT18         <----------DOF2            <---------SPL7                                  <<<<<<<ZML2        --------->ATHB12                 <-----------HVH21                               --------->HSFC1(1)    --------->YAB1                  --------->DEAR3(1)                               --------->HSFB2a(2)   <---------ICU4         --------->YAB1<xxxxxxxxxx                               <---------HSFB2a(2)  --------->ICU4         <xxxxxxxxxxxxxxxxxxsmallRNA(se3) ----------DOF2                <---------HSFC1(1)   <---------ATHB12       <---------ATHB12<xxxxxxxxx ------>HVH21           --------->YAB1         <------ZmHOX2a(2)  <---------YAB1    <xxxxxxxxxxxxxxxxsmallRNA(s)   gactttgaaggcaaaaacacttattttcatattctagaacacttgtacgatcaaatcattactttcttattaatacaatcaagaacaccgtccgcggtaa  15042500         <---------MYB52(1)         xxxxxxxxxxxxxxxx>smallRNA(i)        <-------GAMYB       <-----------RAV1(1)   <---------ARR14(2)              <-------TEIL   --------->GLK1(1)              --------->ARR14(1)   <---------GLK1(1)             --------->ARR14(2) ->At5g28300    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxx>smallRNA(i)               <---------GLK1(2)                  <------------CBF xxxxxsmallRNA(s)                --------->ARR11(1)               <---------YAB1 xxxxxxxxx>smallRNA(s2)          <---------ARR14(2)  --------->TOE1(3) xxsmallRNA(s) <----------DOF2 ----------->ARR10     --------->TOE2(3) xxxxxxsmallRNA(s)    --------->GLK1(2)  <----------DOF2   ------------>CBF xxxxxxxsmallRNA(s)  <---------GLK1(2)<---------MYB52(1)---------->DOF2                  ------------   ttgagaattctgttgttctttgagaatctcacaaagattcgttctttgaagaaacccttaaaacaatttctattgtgcgagttttgactctcacaattta  15042600                                                      --------->MYB46(3)                                                     ------>MYB46(1)                                                     ------>MYB83                                                     --------->ANAC58                                                   --------->AtMYB61                                                   ------->GAMYB                                                   <---------ALFIN1                 --------->ANAC46                                                 -------->P                        --------->LBD16                                               <---------MYB111(1)                <---------LBD16                                               --------->AtMYB61               <---------ARR14(2)                                              --------->MYB46(3)               --------->ARR14(2)                                              --------->DEAR3(2)            --------->YAB1                                   --------->LBD16<---------MYB111(2)      <<<<<<<<<ARR2                                  --------->ANAC58<---------MYB55(2)     --------->WOX13(1)                                  --------->ANAC46--------->MYB46(3)    --------->MYB46(3)                                  --------->ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     <---------GLK1(1)   --------->ANAC46           <<<<<<<<<<WRKY6<---------LBD16            *TSS     --------->GLK1(1)   <xxxxxxxxxxxxxxxxsmallRNA(i)<---------WRKY38(1)           --------->ZAT18        --------->HSFB2a(2)--------->ANAC46<---------WRKY12 --------->At5g28300           <---------ZAT18        <---------HSFB2a(2)--------->ANAC58<---------WRKY45--------->LBD16        --------->ALFIN1          --------->LBD16------>MYB83       <<<<<<<<<<WRKY11--------->LBD16 >CBF  <------ZmHOX2a(1)         <---------LBD16 ------>MYB46(1)    --------->WRKY18(1)----------->HVH21   gcgctagaaggaggggacttgagatttctcttactcccggaacacagaaccaaccacccaattcacaatggtcaacaatcaaatccccggtaacacagtt  15042700                                                         --------->LBD16                                                        --------->O2                                                        <---------ANAC55(2)                                                        --------->ANAC46                                                        --------->ANAC55(2)                                                        --------->TGA1a                                                        <---------O2                                                   <---------At4g35610                                                   --------->At4g35610                                                   <---------ZAT2                                                   --------->ZAT2                                                  <---------ATERF1(1)                                                --------->At4g35610                                                <---------At4g35610  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           --------->ANAC58              ------>ZmHOX2a(1)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           --------->ANAC58            ----------->RAV1(2)----------->HVH21                       ---         --------->GLK1(1)  xxxxxxxxxxxxxxxx>smallRNA(i)<---------TGA1a           <---------YAB1  <--   gatgcagagggaaacccaatccctccaatccagacagacgttcctgaagccgctgctcccgtgaccctagcagaactaagaagtatgatggctcaacttc  15042800                                                                          --------->ARR14(2)       --                                  <---------ANAC58                        <---------ARR14(2)       --             <------ZmHOX2a(2)    <---------ANAC58                   =============HOX2a_HOX2a  ------        <---------DOF5.7(2)     <------ZmHOX2a(2)              ------>MYB83                <---------RAP2.3(3)   --------->DAG2     --------->ANAC58                     -------->P<------ZmHOX2a(1)     <---------DEAR3(1) ------>At4g35610     --------->ANAC58                  --------->At4g35610<------ZmHOX2a(2)<-------- -------At4g35610     --------->ANAC46      --------->MYB46(3) ------>MYB46(1) <------ZmHOX2a(1)<----   tgcagaaggtgaacgatcaagaacaggcaaatcgatccttggcacaacaactcgaagtagctacctcccaaggacggatcaggactactcgtttcggcgc  15042900                                           --------->ANAC58                                           --------->ANAC58                                        <---------REM1(2)                                       ------>MYB46(1)                                       ------>MYB83                                     ------->GAMYB                                     --------->MYB46(3)                                     ================================MYC_MYB                    -----                                    --------->ANAC46                                           <-----                               ------>ZmHOX2a(2)                                              <------                               xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                            -------                              --------->GLK1(1)                                           --------->ARR14(2)                             <---------ARR11(3)                                           <---------ARR14(2)                             --------->ARR11(3)                                       <---------ZAT2                             <---------ARR14(2)                                       <---------At4g35610                        ----------->RAV1(1)--------->ANAC55(1)                        --------->At4g35610             ------>ZmHOX2a(2)<------ZmHOX2a(2)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           --------->ARR14(2)<-----------ARR10               ----------->RAV1(2)    <-----------RAV1(2)          ===========================HOX2a_HOX2a           --------->ANAC58        <---------MYB52(1) ------->ANAC58       --------->At4g35610<---------ALFIN1  --------->ANAC58       <-----------HVH21 ------->ANAC58    --------->At4g35610--------->ANAC46     --------->ANAC46      --------->ANAC58  -- >NtERF2  <------ZmHOX2a(1)  <---------AGP1--------->ANAC46--------->TGA1a       --------->ANAC58<--- -RAP2.3(1)<---------ARR14(2)--------->ARR14(2)          <---------ALFIN1        --------->bZIP60(2) --NtERF2 ============================HOX2a_HOX2a      <---------ALFIN1     --------->ANAC46 --------   gaggcaacttcaggatcgacgagcagcaacagatctcaacccaacacggctcgtgttccacacgcctggcaatactacaaggcccgtcagcagaaccgca  15043000                                                                                  <---------ALFIN1                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                               <---------ZAT18                                                                             <---------At4g35610                                                                             --------->ZAT2                                                                             --------->At4g35610  --------->GLK1(1)                                                       --------->LBD16  <---------GLK1(1)                       <---------LBD16                --------->DEAR3(1)  <------- ---->MYB52(1)                         <---------GLK1(1)                --------->MYB46(3)   -------- ----ALFIN1                     ------>ZmHOX2a(2)                      ------->TEIL   ------>ZmHOX2a(1) ---ABI4(2)                   --------->ARR11(3)                      --------->ARR14(2)  --------->LBD16 -->ZAT18                     <---------ARR11(3)                      --------->MYB52(1) --------->LBD16 ------->LBD16             <------NtERF2<---------ARR14(2)          <---------MYB52(2)=============== ------LBD16       --------->DEAR3(2)  --------->GLK1(1)     ---------->DOF2 <---------ZAT2  -------- ->DEAR3(1)   <------ZmHOX2a(2)<------ZmHOX2a(2)    ------->TEIL  --------->MYB52(1) <---------ALFIN1   ccggaaatcggaagagatcgaaccgagccagcgatcttgggaaatcgggaaacgaatcgaacagaaagaaacgaaccgcagctccctcctccccgagcag  15043100  Previous    Next  AGI:  At3g42990.1    Description:  unknown protein Range:  from: 15041342    to: 15042140    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g42993.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 4.2e-156 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor) Range:  from: 15042612    to: 15048025    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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