Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 <---------ANAC58                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                 <---------ANAC46                 <---------ANAC58  <-----------GT1            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           --------->ATHB12      xxxxxxxxxxxxxxxx>smallRNA(i)                                      --        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                       <-       <---------AHL20(2)  <---------ARR14(2)                                                     <--       -------->HAHB4      --------->ARR14(2)                                                     ---       <---------ICU4   <---------ANAC58                                                          <--      <---------YAB1    <---------ANAC58                                                          ---      <---------ATHB51  --------->ANAC55(2)                                                       <--      --------->ICU4    <---------ANAC55(2)                                                       ---     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                      <-----     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                      ------    --------->YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                       <------    <---------ICU4--------------------->WRI1                   ------->TEIL      <---------ANAC55(2)   <---------AHL20(2)   <---------ANAC46        <---------ANAC46         --------->TOE2(3)    -------   --------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)------->TEIL   ----------->GT1  --------->MYB52(1)   aactattaattattcattggcttgatgcgtatcgatgttactaaaccattttgtgtatgaacatgaatttcaaaatgttaaacacttatcccaacggata  14970500           <---------YAB1        <---------YAB1      ----------->GT1     --------->ICU4   --------->YAB1   <--------ATHB1   <---------ICU4  <---------ATHB51  <---------ATHB12  --------->ICU4 ------------->AGL15 --------------AGL15 ---------------AG                                 ---------->DOF2 -------------->AGL2                             --------->ANAC58             --------->LBD16 ---------------AGL2                             --------->ANAC58            <---------ANAC46 -------------->AG                            <---------ATHB12               <---------ANAC55(1) ---------------AGL3     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               <---------ANAC58 -------------->AGL3     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               <---------ANAC58     <-- ----GLK1(1)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  <---------LBD16      ---- --->GLK1(1)      --------->AHL20(2)     <----------DOF2           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---ARR14(2)  <---------YAB1             --------->TOE2(3)   <---------ANAC55(2)            --------- -->ARR14(2)--------->YAB1        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <-----------RAV1(1)----------   tccaataatggttattataaataaacactgaaatactcttgtactttaatcaagaaagtaatctcgtaaactctatgttgcgggtttataacaaggataa  14970600                                  <---------ANAC58                             <---------WRKY38(1)                           <xxxxxxxxxxxxxxxxsmallRNA(i)                          <xxxxxxxxxxxxxxxxsmallRNA(i)                        <xxxxxxxxxxxxxxxxsmallRNA(i)                       <xxxxxxxxxxxxxxxxsmallRNA(i)                     <xxxxxxxxxxxxxxxxsmallRNA(i)                    <------MYB83                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <---------ANAC55(2)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <------MYB46(1)                    <---------MYB52(2)                               --------->ANAC55(2)                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <-----------GT1                    --------->MYB46(3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                <------MYB46(1) <-----------GT1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->YAB1                   <------MYB83 -------ICU4      ----------->RAV1(1)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         <-----------HVH21  -- ----->ICU4    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <----------DOF2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) >YAB1         --------->AtLEC2   <---------ANAC58  ------->TEIL    --------->MYB59       <---------MYB46(3) ->GT1        <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <-------TEIL    <---------MYB52(1)      --------->MYB55(2)   atatgaccttcttgtcgatgcaacaatcgagtcaatgcgtccattgaatcgatgcatcttttataaccattaggtatctaaatgtcatatagtgggtgat  14970700                                                                <---------ICU4                                                          ----------->GT1                     <------                                                --------->AHL20(2) <-----------GT1           --------        --------->YAB1                --------->DAG2  --------->ZAT6               <----------DOF2        <---------ICU4               ---------->DOF2<<<<<<<<<<<<<<<<<LFY   --------->YAB1    --------     --------->YAB1      --------->TOE1(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------ANAC58     <---------ICU4     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ICU4     <---------ANAC58 ------>P      ------>ZmHOX2a(1)   >>>>>>>>>GATA-1 <---------------AGL15  <---------YAB1     --------   caacccataatcatctccttatatatacttacgaatagataaagtccaaattacttacactggtaaaaatcacattatcatattgctttctgagcaagta  14970800                                     --------->ANAC46                      <---------HSFB2a(1)                                       *TSS                      --------->HSFC1(2)                                  --------->ATHB12          -                      <---------HSFC1(2)                                  <---------ICU4           <x                      --------->HSFB2a(1)                                --------->ICU4            <-                     <---------ARR14(2)                                  <---------YAB1            <x                     --------->ARR11(3)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     --------->GLK1(2)                                 --------->YAB1             <xx                     <-----------ARR10<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->TOE2(3)     ----                     --------->ARR14(2) ------>MYB46(1)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     <---------ARR11(3) ------>MYB83                --------->ANAC46 <------ZmHOX2a(1)                    <---------GLK1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<--------HAHB4       <xxxxx                  xxxxxxxxxxxxxxxx>smallRNA(i)  --------->ANAC46    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 <------ZmHOX2a(1)   --------->ANAC55(2)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          --------->ATHB12         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ---MYB52(2)   <---------TOE2(3)   <-----------GT1             <----------DOF2---------->DOF2  <----- --->GT1  <---------ICU4        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ->ANAC58 --------->YAB1       xxxxxxxxxxxxxxxx>smallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxx ->ANAC58<---------ATHB12      <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   acatttgataaatcattaaggagaatcttctggtttttcacctaatgtccacataattctcaatactttcacatcatcattaaaccaggatgactaatcc  14970900    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ANAC58                                                               xxxxxxxxxxxxxxxxxxxx  --------->ANAC58                                                             <---------ANAC58 --------->DOF2                                                                <---------ANAC58 xxxxxxxxxxxxxxxsmallRNA(i)                                                <------------CBF --------MYB52(1)                                                         --------->ATHB12 xxxxxxxxxxxxxxxsmallRNA(s)                                              <---------YAB1 xxxxxxxxxxxxxxsmallRNA(s)--------->AHL20(2)                          <---------DAG2          ------- ----->LBD16              <---------AHL20(2)                          <----------DOF2       xxxxxxxxx xxxxxxxxxxxxxxxxxxsmallRNA(si3)                              <---------YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ----LBD16             <----------DOF2            <----------DOF2  <-----------GT1<xxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxx>smallRNA(le3)             <---------ARR11(3)  <---------AHL20(2)  <---------MYB52(1)   ggttaagccaaatatactcttgaaacttttaattcttttgaaacttctagttctttcaaaacttataatttacttttcattgcttatcagttactccctt  14971000                                                                               --------->AHL20(2)                                                                               <---------AHL20(2)                                                                              --------->YAB1                                                                              <---------AHL20(2)                                                                           --------->YAB1                                                                           <--------HAHB4                                                                           <---------ICU4          --------->YAB1                                                   <--------ATHB1         <---------YAB1                      --------->YAB1                -------->HAHB4     ------>ZmHOX2a(2)                      <---------ATHB12               --------->ATHB51    <------ZmHOX2a(2)                 --------->YAB1                      --------->AHL20(2)   --------->AGP1                     <---------ICU4                      <---------YAB1   <---------ARR11(3)                --------->ICU4             --------->MYB52(1)   --------->ARR11(3)              --------->YAB1 --------->TOE2(3)     --------->YAB1 xxx>smallRNA(si3)                <---------YAB1<---------TOE2(2)     <---------ARR11(3) -->TOE2(3)  --------->YAB1      --------->AHL20(2)     <---------AHL20(2)<---------ATHB51--------->GLK1(2) xxxxxxxxxxxxxx>smallRNA(si3)    <---------AHL20(2)     --------->AHL20(2)--------->ICU4 <---------GLK1(2) xxxsmallRNA(i2)<---------ICU4------->TEIL--------->WOX13(1)    --------->YAB1--------->AHL20(2)    <   aatgagatcttataatcaaaattacttccatgtattttaataatcaatcatatgttaataaaacaataacgagataataattaaaattttagattctaat  14971100              --------->AHL20(2)              <---------AHL20(2)             --------->AHL20(2)             <---------AHL20(2)             --------->AHL20(1)                  --------->ZAT14  --------->ANAC55(2)             <---------AHL20(1)      ------>ZmHOX2a(2)            <---------ANAC58             <-----         <---------AHL20(2)         <------ZmHOX2a(2)             <---------ANAC58        --------->AHL20(2)         <---------AHL20(1)        --------->ARR14(3)             <---------ANAC55(2)     <---------AHL20(1)         --------->AHL20(2)        <---------ARR11(3)    <---------YAB1               <---------AHL20(2)        --------->AHL20(2)         --------->ARR11(3) --------->GLK1(2)              <---------AHL20(1)    <---------ARR11(3)             <---------ARR14(3)<---------GLK1(2)     --------->YAB1 <---------AHL20(2) -----------GT1          <---------STY1(2)   <-----------GT1    <-----------GT1     <---------CCA1(2)   ataaacgatattaaatttaatttgactagctatgtaagatcttatattcacttcagaatatgagtattacttatcaacaataactcatatattttattta  14971200                                                                               <---------ANAC55(2)                                                                               <---------ANAC46                                                                               <---------ANAC58                                                                               --------->ANAC55(2)                                                                   <---------WRKY12                                                                 <------ZmHOX2a(1)                                                               xxxxxxxxxxxxxxxx>smallRNA(i)                           --------->YAB1                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       <-------TEIL                        --------->ETT(2)    <---------ANAC58                <----------DOF2      <---------AHL20(2) <---------ANAC46   <---------ANAC58      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         xxxxxxxxxxxxxxx>smallRNA(si3)  ---------->DOF2 ------GT1 <<<<<<<<<TAC1  <---------YAB1    <----------DOF2<---------ETT(2)<---------ANAC58   gcctttgaaaaacactcgatttaagttcataatagttcttaaatttctttcaaatattgtgtctacaggacaacgatacttgcgtaaaagtttaatcgtc  14971300                                                                                                  <--                                                                                                  ---                                                                                                 ----                                                                                                 <---                                                                                             <-------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                           --------->YAB1                                                                                           <---------ICU4                                                                                          --------->ICU4        --------->AtMYB61                                                                 <---------YAB1     <---------ALFIN1<---------ARR11(3)                                             <-----------GT1   <---------At5g28300<---------RVE1(1)              --------->DAG2                --------->ICU4<---  <-----------GT1    --------->ARR11(3)             ---------->DOF2              --------->YAB1  ----   tgttttaccaccttcgcatcagagatattctcttaacaatgtgagttatattcaaaaagagacttcaagtcttgaagttttagtaataactaattataat  14971400  Previous    Next  AGI:  At3g42883.1    Description:  transposable element gene. copia-like retrotransposon family, has a 2.5e-10 P-value blast match to GB:CAA26446 ORF2 (Ty1_Copia-element) (Drosophila melanogaster) Range:  from: 14968130    to: 14970880    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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