Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --       --------->ANAC58                                                                           <--       --------->ANAC58                                           <---------ICU4      <-----------GT1     <---------ANAC58                                   <----------ID1 --------->ANAC55(2)       <---     <---------ANAC58            ----------->GT1      ----------->GT1  <---------ANAC55(2)    ------- -----DOF2                   <-----------GT1        ---------->DOF2    ----------------->AG<xxxxxxxxx   tagttttgctcgtaatataacatacaatatttaacatgaaaaatcaaattttggaaaagaaacaaaaaacattacctattgggttttttgacaagtctga  14960000                                                                    <---------YAB1                                    <---------KAN4(2)             <---------AHL20(2)                                  --------->At5g28300            <---------AHL20(2)                                 ----------->GT1              --------->AHL20(2)                                --------->ANAC58             <---------AHL20(2)                                --------->ANAC58             <---------AHL20(1)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                --------->AHL20(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxsmallRNA(s)                           <  ---------->DOF2               --------->ANAC46         <---------MYB52(1)                       --- --------->GT1                 --------->LBD16          --------->At5g28300             --------->AHL20(2) -------MYB46(3)               <---------LBD16         --------->TOE2(3)--------->AHL20(2)       <--- ------ANAC46            <---------ANAC58   <---------MYB52(1)<---------AHL20(2)        <---------AHL20(2) ---->HVH21              <---------ANAC58  <-----------HVH21--------->ICU4         --------->AHL20(2) xxxxxxxxxxxxxxsmallRNA(fl3)  <---------ALFIN1         ----------->GT1  <---------AHL20(2)  xxxxxxxxx   tgggtaaagactggtttgttttgaaatgcgttccacggtataatccgttagacaaaaccgtaatttttttatttttaaatgcaaattgaataaaatatag  14960100       --------->ZAT6  <------MYB46(1)  <------MYB83                                                <---------YAB1                      ---  ----------->GT1                --------->DAG2             <-----------GT1                     <xxxx ---------WOX13(1)              ---------->DOF2          --------->ANAC46             <---------ICU4 ------>ATHB12       <---------YAB1                  <-----------GT1     --------->TOE1(3)  <xxxxxxxx ------YAB1    <---------YAB1--------->AHL20(2)  <----------DOF2         --------->TOE2(3)--------->PCF2 xxxxxxxxxx>smallRNA(i2)    --------->AHL20(2)   <---------DAG2    --------->YAB1 <-------TEIL<xxxxxx   tgattggtaacactactacgattttgataaataaaaaagtttcgaaaatcgctttttacaagttaccattcacaaccttagagtttcatcagggcccgtc  14960200                               --------->AHL20(2)                                              ------                              <---------AHL20(1)<---------AHL20(2)                <---------AHL20(1)                              <---------AHL20(2)<---------AHL20(1)                <---------ARR11(3)                           --------->AHL20(2)  --------->AHL20(2)                 --------->AHL20(1)                          --------->AHL20(2)   <---------AHL20(2)                 --------->ARR11(3)                   ----------->RAV1(1)        <---------YAB1                    <---------ARR11(3)    <------------CBF      <---------AHL20(2)--------->YAB1                      --------->ARR11(3)  --------->ARR11(3)     <---------AHL20(1) <--------HAHB4                      <---------AHL20(1) --->ZmHOX2a(1)   <----------ID1      --------->ZAT6                            --------->AHL20(1) xxxxxxxxxxxxsmallRNA(i) --------->AHL20(2)<---------YAB1                ----------->GT1      <------ xxxxxxxxxxxxxxxsmallRNA(fl3) --------->AHL20(2)--------->AHL20(2)       <---------ANAC46 <---------LBD16 xxxxxxxxxxxxxxxxxsmallRNA(se3)<---------AHL20(2)                    <----------DOF2 <---------AHL20(2)   ctaagaaattggagtctaaaacaacaaaataatttttttaagactattattaaattttcaaattttggggtcttttcgtaaaaatatttttttggggggc  14960300                        <---------ARR11(1)                        <---------ARR14(2)                        --------->GLK1(2)                        ------->TEIL                        <-----------ARR10                        --------->ARR14(2)                       <---------CCA1(2)                       <---------ARR14(1)         --------->AHL20(1)         <---------AHL20(1)                                                                    <-----         --------->AHL20(2)                                                         <------NtERF2         --------->ARR11(3)                                                       <---------RAP2.6(2)         <---------ARR11(3)   <---------HSFB2a(2)                                 <---------DEAR3(1) >NtERF2 <---------AHL20(2)   --------->HSFB2a(2)    --------->ATHB12     --------->ANAC46    <------ ---PCF2--------->AHL20(2) <----------DOF2  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->RAP2.6(3)   ctatttgaaaatatatttcttatgcgaatcttttggaaaaatttgggagccttgttcattagtttctccttgctcccctcaaggtcggccttgagtttca  14960400                                                                                         ---------->ID1                                                                                       <-----------RAV1(1)                                                                              <---------At4g35610             --------->ATHB12                                                 --------->At4g35610            <------ZmHOX2a(2)          <---------ICU4                       =======================RAV            <---------YAB1            --------->ICU4                        <-----------RAV1(2)           <---------ARR11(3)   --------->DAG2   <---------ARR11(3)       <-----------HVH21  ----------->GT1         <---------YAB1         --------->ARR11(3) ---------->DOF2    <---------MYB46(3) ----ANAC46--------->ARR11(3)  ---------->DOF2 ----------->ARR10   <----------DOF2     --------->MYB52(2) -TEIL ---------->DOF2 <-------TEIL   <---------YAB1       <-------TEIL<---------At4g35610          <   tgtagagagaaaagatcattagaaattcatgaataaagtcatcatggctaagatgttcgggttcaagcgcttaagcggtcagatggcatttgttgcaatt  14960500                                                                                               <-----                                                                                               ------                                                                                               <-----                                         ---------->DOF2                                       <-----                              <---------GLK1(2)                          ----------->GT1       <-----                              <---------ARR14(2)                     --------->WOX13(1)        <-----                              --------->ARR14(2)                    --------------->AGL15    <-------                              --------->ARR11(3)                 <-----------GT1         --------->AHL20(1)                              <---------ARR11(3)          --------->ATHB12               <---------AHL20(2)                            <---------TOE2(2)            <---------MYB52(1)              --------->AHL20(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            ----------->GT1 <---------ATHB12 --------->AHL20(2)     --------->At5g28300    <---------TOE1(2)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ZAT6<---------AHL20(1) ---------TOE2(3)xxxxxxxxxxxxxxxx>smallRNA(i)----------->GT1   <-----------HVH21  ----------->GT1   ctaaggcagtgaatggagactatgtcttcgcagattttgaagtaaaagcgtagaaaaccgtgatttgtcaccaattagtgaaactagaaaataaattacg  14960600                                                     <---------PCF5                                              --------->YAB1                                              -------->HAHB4        <----------ID1                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      ---------->DOF2                      --------->YAB1 <---------ALFIN1      <----------DOF2   --- ----ANAC55(1)                            <---------YAB1<---------ALFIN1      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --->ANAC55(2)                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----ANAC58                     --------->GLK1(1)    <------ZmHOX2a(1)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ----ANAC55(2)                  <---------GLK1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          xxxxxx ----ANAC46               <xxxxxxxxxxxxxxxxsmallRNA(i)  --------->AtMYB61   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ----ANAC58  --------->AHL20(2)>>>>>>>>>>GATA-1  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)      <---------ZAT6 ----GT1----------->GT1  <------------AtMYB77<---------YAB1            <---------YAB1     <---------AtMYB61   tttttcaaaaaagaaaaaaatagagcaactgtggatttcaaagtataataatacaggaccacacttctaaattgtcatactccttttatgtagtggtcca  14960700                                                         --------->TOE2(3)                                                         <---------ANAC46                                                    -------->HAHB4                                                    <---------ICU4  --------->AHL20(1)                   <---------YAB1                  --------->ICU4<---------AHL20(2)                   <---------AHL20(2)              <---------YAB1--------->AHL20(2)                  --------->AHL20(2)               <---------ATHB51 --------->ARR11(3)                  <---------AHL20(1)             --------->YAB1--------->AHL20(2)          ----------->GT1  <----------DOF2       <---------ICU4<---------AHL20(2)     --------->ANAC58   <---------AHL20(2)      <---------AHL20(2)  <---------AHL20(1)     --------->ANAC58<---------AHL20(2)         --------->AHL20(2) <---------AHL20(2)       <xxxxxxxx -------->GT1     --------->YAB1           <----------DOF2------>ZmHOX2a(1)       <-----------HVH21 < xxxxxxxxxxxxxxxxx>smallRNA(se3)       <----------DOF2<-----------GT1   ----------->GT1 --------->YAB1   atgtaaaacgcatggtacaatattattttcttttgtaatttctttctttattaattattccttatatatatatattgttaaatgtgtcaaacacaattca  14960800                                                                                                   <-                                                                                             --------                                                                                            <--------                                                              <---------TOE2(3)             ---------                                                       --------->YAB1                     <-------TEIL xxxxxxxxxxxxxxxsmallRNA(i2)               <----------DOF2   ---------->DOF2          <---------TOE1(3) -------TEIL    <-------TEIL<-----------TGA1        <----------DOF2                   <--------------   catacacaaacacaaaaattcattctctctcgtcatactctctctctttttctactttgatattaaagaaaattgcaaacccccattgaaggtacttatt  14960900  Previous    Next  AGI:  At3g42870.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30520.1) Range:  from: 14960444    to: 14962267    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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