Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              --------->LBD16                                                           --------->LBD16                                                          <---------HSFB2a(2)                                                          --------->HSFB2a(2)                                                         <---------LBD16                                                    --------->AHL20(2)                                                    <---------AHL20(2)                    <---------ATHB51          <---------AtLEC2                  ----------->RAV1(1)                         --------->TOE2(3)  ---------->DOF2       <---------ICU4    <---------At4g35610                 ------->GAMYB<---------ICU4 ---------TOE2(3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ANAC46--------->MYB52(1) ---------YAB1         --------->ICU4     --------->At4g35610              <-----------GT1<---------YAB1   ttaagaaagtatgcatgacaacatactaattagtctctctcttcagcgacatatttatttcccgaaaatacccctattaaccgaaataaacgataattgt  14924600                                                        <------NtERF2                  <---------ICU4                                            <---------ARR11(3)                         --------->YAB1                                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  --------->ATHB12                                  <-------TEIL         ------>NtERF2                   -------->ATHB1                                 --------->CCA1(2)  --------->ZAT2                    <---------YAB1                                <---------ARR14(2)  --------->At4g35610               <---------ATHB12                                --------->ARR14(2) --------->ANAC46                   --------->ICU4                               <------ZmHOX2a(1)  --------->MYB46(3)                --------->YAB1                       <---------TOE2(3)    --------->ARR14(2)              --------->ARR11(3)          --------->At4g35610<---------TOE2(3) <---------ALFIN1             <---------ARR11(3)       --------->At4g35610   <---------TOE1(3)<-------TEIL                  --------->ARR14(2)       <---------At4g35610   <---------ANAC46--------->CCA1(2)              <---------ARR14(2)   <---------ZAT6    <---------AHL20(2)     <---------ARR14(2)             --------->YAB1   <--------   <---------REM1(1)--------->AHL20(2)      --------->ARR11(3)    --------->YAB1 --------->YAB1 <----   ttctagtgtagctgcagaagcatttaatgttgaggatacactcgaagatacacccgctggcattagaaacataacaaggatattgataatcattgctgat  14924700                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             --------->ARR14(2)           --------->LBD16          <---------ANAC58          <---------ANAC58                                                                          <          <---------ANAC46                              <---------ARR11(3)                          -       --------->ALFIN1                                 --------->ARR11(3)                      -----    <---------TOE2(3)                    <---------AHL20(2)                                     -----    <---------TOE1(3)                    --------->ATHB12                ------->GAMYB        <------ -ANAC46 <---------LBD16   <<<<<<<<<<<<<<<<<LFY         <-----------GT1 ----------->GT1       ------- -----RVE1(1)<---------ARR14(2)         --------->AHL20(2)      <----------DOF2           ---------->DOF2   atttttgaggttgcggatatatcgtttgtatacactgggctatttattagcaatgtattatcttccctttaacaacgaaaaaactacaagactaaagacc  14924800                                                                                         <---------ANAC46     <---------ETT(1)                                                                   --------->MYB52(2) ---------At4g35610                                                                   <---------MYB52(1) -------->At4g35610                                       ----------->GT1--------->CCA1(2) ---->TOE2(3)               --------->At4g35610          --------->DAG2 <---------ARR11(3)    <------ ---->TOE1(3)             --------->ZAT18   --------->GLK1(1) ---------->DOF2       <---------ANAC58 ---ARR11(3)<----------DOF2 <---------At4g35610        ---------->DOF2  --------->ARR11(1)    ------- -->ARR11(3)--------->TOE2(3)  ---------->DOF2  ---------->DOF2     ---------->DOF2 <---------ANAC58   ttagcttccgacaactttaatgcaagagggagctaaagaaacagagaaatcaaagcagaaaggtaaaagtaaaagatttgagtatttcgttacttagagt  14924900                                                                                                *TSS                                                                                                <----                                                                                         <---------ANAC55(2)                                                                                         --------->ANAC55(2)                                                                                         <---------ANAC46                                                                                         --------->ANAC58                                                                                         --------->ANAC58                                                                                      <---------MYB52(1)                                                                                      --------->ARR14(2)                                                               ----------->GT1        <---------ARR14(2)                                                            ------->TEIL          <---------ZAT14   -                                                       <---------DOF5.7(2)        --------->ZAT14 <--                                                       --------->MYB52(1)         <---------At4g35610                                                     --------->DOF5.7(2)      --------->GLK1(2) <---- ---ZAT6                                         --------->ARR14(2)     --------->HSFB2a(2)     <---- ---->GT1     <----------DOF2--------->ALFIN1    <---------ARR14(2)     <---------HSFB2a(2)<---------AtLEC2   taaatttttggaatttcttttttaacttagggtttgggaaactaaacttcatatcggtaacgaatttgttatttctaaaaattctgcagttacgcatggc  14925000                                                                   ------->MYC3                                                         <---------O2                                                         --------->O2                                                         <---------TGA1a                                                         --------->ANAC55(2)                     <---                                                         --------->TGA1a                         <---                                                         --------->ANAC58                        <---                                                         --------->ANAC46                       <----                       --------->ALFIN1                  --------->ANAC58                     <------                       <---------ANAC46                  <---------ANAC55(2)                 <-------          <---------WOX13(1) ---------->DOF2             --------->ANAC55(1)                 -------- -----ANAC46     <---------LBD16               <---------HSFC1(2)  ------->MYC2              <------- -------->MYB52(2) <---------LBD16--------->CCA1(2)    <---------ALFIN1                     <-------- -----GAMYB     ----------->RAV1(2)            <---------HSFB2a(1) <-------MYC3            <---------RAP2.6(2) -----ANAC58<------MYB83 --------->ALFIN1    <---------GLK1(2)     <-------MYC2           <---------LBD16 -----ANAC58<------MYB46(1)  ======================================bZIP_DOF           <------ZmHOX2a(1)   gtttgtggtgagattggtacctggggagtggaaaagagatgaacagggattcttcgaacacgtctcgcatgtggatgagtttgaactaggagtccggctg  14925100      --------->ATHB12                                                                     <<<<<<<<<<     ----------->HVH21                                                                     ----------   <---------ANAC58                                                                     <---------ZAT18   <---------ANAC58                                                               <<<<<<<<<<<<<<<<<LFY ------ANAC58                                                                     ------->TEIL ------ANAC46                            --------->CCA1(2)                      <---------SPL7 ------ANAC58                           <---------ARR14(2)                    <---------TOE1(3) --NtERF2                               --------->ARR14(2)                    <---------TOE2(3) ---DEAR3(1)                        ---------->DOF2                          <-----------GT1 --At4g35610                     <------NtERF2                               <---------DOF5.7(2) ->ZAT2           ---------->DOF2--------->At5g28300        --------->At4g35610<---------ANAC58 --ZAT2 <---------ANAC46       <---------ANAC46             <---------At4g35610<---------ANAC58 -ATERF1(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <-----------RAV1(2)--------->MYB52(1)  <---   cgtgagcgtgatgggtttgcgaaagttgttatggcggtaaaagataggctagggctgagttcagatgacaatatcgaattaacgtaccagtggccacagt  14925200                                      --------->ARR11(3)                                           --                                      --------->AHL20(1)                                         <---                                      <---------AHL20(1)                            --------->ARR14(2)                                      <---------ARR11(3)    --------->ANAC46        --------->ARR11(3)                            --------->ANAC58                --------->ANAC58        <---------ARR14(2) <<<<<<<LFY  <---------WOX13(1)  <---------ATHB12           --------->ANAC58        <---------ARR11(1) ->RAV1(1) --------->ATHB12 --------->ANAC58  ----------->HVH21                    --------->GLK1(1) ------MYB46(3)            ------->TEIL       ----------->TGA1                     <---------CCA1(2)   ggatgatcaggcctgattggaagcgagcgaacccaatcgatatattggatgacgaagacatcacgcagttcatggcgataagggcatatctagatgaagt  14925300                                                                          <-------GAMYB                                                                         <---------DEAR3(2)                                                                   ------>ZmHOX2a(2)                                                                 --------->ARR11(3)                                                                 <---------ARR11(3)                                                                 <---------ARR14(2)                                                                 <-----------ARR10                                                                 --------->ARR14(2)                                                                 <---------AGP1                     -                        --------->ALFIN1                        <---------CCA1(2)            <-------                   <---------TOE1(1)              <---------At5g28300    <---------MYB46(3)  --------                   <---------TOE2(1)    --------->TOE2(3)    <---------LBD16                --------- ----->TEIL--------->ICU4              ----------->GT1      ----------->RAV1(2)      ---------->DOF2< ----TEIL  <---------YAB1     <---------HSFB2a(1) <---------DOF5.7(2)   <---------DEAR3(1)  ---------   gcatcttcgagtgaagattatacgaggtggaaatgttcgaaatgttaacagttaccgtagtaacctggatctaggcggtttgagttcaaaagaaatatct  14925400                                          --------->ZAT18                  ----------->GT1                                          <---------ZAT18                 <---------TOE2(3)                                          --------->LBD16                 <---------TOE1(3)                                       --------->SPL7                    ============================                                      --------->ARR14(2)            --------->HSFB2a(1)                                      <---------ARR14(2)            <---------HSFB2a(1)                                     <---------SPL7             --------->LBD16                                    <---------ANAC58           --------->ANAC55(2)                                    <---------ANAC58           <---------ANAC55(2)                                   <---------------AtSPL8      <---------ANAC58      <---------HSFB2a(2)         <---------ANAC46             <---------ANAC46      --------->HSFB2a(2)        --------->ALFIN1              --------->HSFB2a(2) -------------->AtSPL8          --------->REM1(2)              <---------HSFB2a(2) --ARR11(3)                  <---------ANAC46                  <---------ANAC58                    -- ->ARR11(3)                  <---------ANAC55(1)              <---------LBD16                -------- >RVE1(1)                    <---------ANAC58              <-------GAMYB <-----------RAV1(2)<xxxxxxxx ---------ICU4               <---------ANAC58             ===========================RAV  ----------- >CCA1(1)     <---------ANAC46 --------->ALFIN1           <-----------RAV1(1)      <----------DOF2<--   gataagtactagaattacgcagaaacaagagccgtgtggggtaccgcgctaacaagaatgctgttgcggaacatttcaggttaaacttttagcaacatta  14925500  Previous    Next  AGI:  At3g42806.1    Description:  transposable element gene. Mutator-like transposase family, has a 2.2e-53 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain) Range:  from: 14924996    to: 14929655    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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