Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            --------->ANAC58                                                                <---------ZAT18   --------->ATHB12                               <---------YAB1                  <---------ZAT6    <------ZmHOX2a(2)                ------->TEIL   <---------AHL20(2)          --------->ZAT14       <---------YAB1       --------->AHL20(2)     <---------AHL20(2)           <---------ZAT14      <---------ARR11(3) ----ANAC58    <---------CCA1(2)        ---------->DOF2  --------->REM1(2)      --------->ARR11(3) ----ANAC46  --------->ANAC55(2)     <---------TOE2(3)  <---------ANAC46================HOX2a_HOX2a ----ANAC58  <---------ANAC55(2)  <---------YAB1    <---------At4g35610 ------>ZmHOX2a(1) --------->ANAC58   tattctatttttaatatgtatctttcatctatttttattaatgaaagtatattcaactgtgtatagtgttcttcctatgagagatcattgaaacgcttct  14912200                                                   ------>ZmHOX2a(1)                                                   <---------HSFB2a(2)                                              <---------GLK1(1)                                              --------->GLK1(1)                                             --------->ARR11(3)                <---------ANAC58            --------->YAB1              <---------At4g35610                <---------ANAC46   --------->ARR11(3)             ---------->DOF2                <---------ANAC58   <---------ARR11(3)     --------->MYB59       ---------->DOF2            --------->YAB1   --------->HSFB2a(2)  --------->At4g35610  ---------->DOF2          ---------->DOF2<---------WOX13(1)<------ZmHOX2a(1)   <-------TEIL    -----   tgagaaaagaaaagagtagcgtcgttcaaaaaagaatgatattgaatgatatcctagaattaggaccatatagcagcttaaatacatatatttcacaaat  14912300                   ------>ZmHOX2a(2)                  <------ZmHOX2a(2)                 --------->ARR14(3)                 --------->ARR14(2)                 <---------ARR11(3)                 <---------ARR14(2)                 <---------ARR14(3)                 <-----------ARR10                 --------->ARR11(3)                 --------->AGP1                                    <---------ALFIN1               ----------->ARR10                                 ------>MYB83       --------->YAB1                                            ------>MYB46(1)       --------->AHL20(2)         --------->ANAC46              --------->ANAC46   <-------TEIL ------>GT1  ---------->DOF2    --------->MYB46(3) <---------YAB1----------->RAV1(1)               <-   gtaatacaataaaaacaaagatcttctccgattaacaaacaacttctccgattaccaatgcataacccaacacatcgaatcgatgttcatgaaacattca  14912400                                                                                      <------MYB83                                 ------>MYB83                                   <---------AHL20(2)                                 --------->MYB52(1)                             --------->AHL20(2)                               <---------MYB46(2)                      --------->DOF5.7(2)                               <---------MYB59                        --------->TOE2(3)       --------->ANAC46        <---------MYB111(1)                 --------->MYB52(1) ----------->GT1       --------->ANAC58      ------->TEIL                        --------->MYB46(3)   <------MYB46(1)       --------->ANAC58 ---------->DOF2                  ---------->DOF2       --------->AHL20(2)  xx --------ATHB12    <------NtERF2 ------>MYB46(1) <-------TEIL    <---------MYB52(2)  --------->MYB59   aatgatcaaacgctagctctcggcatgaaagaacctaacaacaacaagagattcaaaaaaaaagataacaaacgtttacaaaaaaatttggttattttct  14912500                                                                             <---------O2                                                                             --------->O2                                                                             --------->ANAC46                                                                             --------->ANAC58                    <---------ARR11(3)                                       --------->ANAC58                    --------->ARR11(3)                                       --------->TGA1a                   <---------CCA1(2)                             --------->YAB1         <---------ICU4                                          <---------ICU4         --------->ATHB12                                       <---------ATHB12        <---------YAB1                      ----------->HVH21  ------>MYB83  <---------TGA1a      ------>ZmHOX2a(2)                   =============================================bZIP_DOF     <    --------->ARR11(3)            <---------GLK1(2)            ------>MYB46(1)                     --    <---------ARR11(3)    <---------At4g35610                --------->AtMYB61           <----------- xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <----------DOF2   ------------>CBF --------->bZIP60(2) <---   gcaattgatcttcattgctatatatctctgcttcttgattcttcctttgacaacttccctcgaccaatcttcacttgccacgtctcacatctattgtctc  14912600              ------->MYC2              ------->MYC4              ------->MYC3              <-------MYC3              <-------MYC2              <-------PIF5              <-------MYC4              ------->PIF5             <---------TGA1a             --------->bZIP60(2)             --------->TGA1a             --------->ANAC55(2)             <<<<<<<<<<ABI5             <---------ANAC55(2)             <<<<<<<<<<HY5             <<<<<<<<<<AtMYC2             --------->O2             <--------ABF1           <---------ALFIN1--------->AHL20(2)                             <---------TOE1(3) ---------ATHB12        --------->YAB1                       <---------TOE2(2) ------->ANAC46        <---------YAB1    *TSS                <---------TOE1(2)        ----------->GT1 -CBF --------->At4g35610  --------->AHL20(1)         --------->ARR14(2)  <---------TOE2(3) ------ALFIN1<---------O2  <---------AHL20(1)        <---------CCA1(2) --------->WRKY18(1)         <-   cactcatctactgccacgtgtctctatgatatattagtgcctcatttcatatatcaaatctcccatgtttgtagtcaaggttctaagtttgaaaaatcgt  14912700                                                                                             <-------                                                 <---------MYB52(1)                    <---------ANAC58                                                <-------GAMYB                          <---------ANAC58                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                         <---------YAB1                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   <---------ANAC58            ----------->GT1                    <---------MYB46(3)              <---------ANAC58          ---------->DOF2               <-----------RAV1(1)<-----------GT1     <---------ANAC46 --------->LBD16    --------->ZAT6  <----------DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     -------- --------LBD16    <-----------GT1  <XXXXXXXXXXXXXXXXXXXXMIR2939              --------->ARR11(3)   ttgcgcaaaacaaaaagaaataacaccattgttgatgcctttgtgttgtctgttagccatcttacaatctctcgagtaatgtcttgtatgcttgaaactt  14912800                                                                      --------->O2                                                                      --------->bZIP60(2)                                                                      --------->ANAC46                                                        ------->GAMYB --------->ANAC58                                                       <---------ALFIN1                                                   <---------MYB52(2) --------->ANAC55(1)                                                 --------->ZAT6       --------->ANAC55(2)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            --------->ANAC58                    <-----------GT1       --------->ARR14(2)          <---------ANAC55(2)         --------->YAB1                   <---------GLK1(2)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------YAB1                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --HSFC1(2)      ----------->GT1    xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      <-------TEIL ->HSFC1(2) ---------->DOF2<---------YAB1 <---------ARR14(2)  ---------->DOF2 <---------ALFIN1-------   ccattcgtttatcataaagaagtaacaatatggtagaagttgccgattttctcactaacaccctcaaagaccacgtaacaacactcttgtcaacatacac  14912900                                                       --------->HSFB2a(2)                                                       <---------ANAC55(2)                        ---                                               ------>MYB83                                       ---                                               --------->MYB52(1)                                 ---                                               ------>MYB46(1)                                  -----                                             <---------MYB46(2)                               -------                                             <---------MYB111(2)     <-----------GT1          <------MYB46(1)                                          <-----------GT1          <---------DAG2             <------MYB83                                         --------->MYB46(3)        <----------DOF2            <------                                    <------NtERF2      --------->ANAC55(2)                  <--------              <---------ANAC58   <xxxxxxxxxxxxxxxxsmallRNA(i)  --------->MYB46(3)   --------->ARR11(3)     <-----------HVH21         --------->MYB111(1)     <---------HSFB2a(2)          <---------ARR11(3) -->ANAC46    <---------ANAC58 <---------MYB46(3)   <---------MYB52(1)  <---------------AGL15 <------   cattcgatgtcatttgtcttgttcattcactagtagttggcgaatcaccaaactgttatggaacaacaactttactcttcttagaagctcttgggcaggt  14913000                                                                              --------->ANAC46                                                                              --------->ANAC58                                                                              --------->ANAC58    --------->LBD16                          <---------ARR14(3)               <---------ANAC55(2)  ------>ZmHOX2a(2)                          --------->ARR14(3)            --------->ARR14(2)  <---------LBD16                            --------->AGP1                <---------ARR14(2) -------->HVH21              <---------AHL20(2)                      <---------SPL7     <----------DOF2 -------->ARR10              --------->AHL20(2)------>ZmHOX2a(2)   <---------------AtSPL8 -------------------->TaNAC69(2)             --------->ARR11(3)    --------------->AtSPL8 ---->ALFIN1                 --------->ATHB51--------->ARR14(2)    <---------------AtSPL3      <----- -->At4g35610                --------->ATHB12<---------ARR11(3)   >>>>>>>>>ARR1   <---------ARR14(2) ---ZAT2  <-------TEIL      <---------AHL20(2)<------ZmHOX2a(2)   >>>>>>>>>ARR2   --------->ARR14(2) ---RAV1(2)--------->ANAC55(2)               <---------AGP1     <---------YAB1--------->ANAC55(2) ---At4g35610               --------->ICU4   <---------ARR14(2) <---------TOE2(3)<---------GLK1(1)   gtgatccggacatacgtcttcacattcgaaattatttgaagttgcaagatcttgaactccagcactaagattgtacgaatacgaaatctgcttatttgca  14913100  Previous    Next  AGI:  At3g42798.1    Description:  transposable element gene. pseudogene, similar to OSJNBb0043H09.1, similar to En/Spm-like transposon protein; blastp match of 52% identity and 1.8e-07 P-value to GP|21740634|emb|CAD40195.1||AL606611 OSJNBb0043H09.1 {Oryza sativa (japonica cultivar-group)} Range:  from: 14912641    to: 14913682    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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