Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 --------->At4g35610                              --------->ARR11(3)                              <---------ARR11(3)                          --------->YAB1                                                          <--               --------->TOE1(3)                                   <---------YAB1                 <--               --------->TOE2(3)------>ZmHOX2a(2)               <---------YAB1          --------->AHL20(2)             ------->TEIL<---------AHL20(2)                  <---------YAB1             <---------AHL20(2)            <-----------GT1<---------TOE2(3)             --------->ARR11(3)         <---------YAB1---   <---------ANAC46     <---------YAB1                 <---------YAB1       ----------->GT1 ---------   ttttagggtgtattgaaccttacatttttaatgatctgagttttagtgagtttttatatgattttgatgatttttgggaagttaatatgatttattgtaa  14877700                                                                        ------>ZmHOX2a(1)                                                                    <---------ARR14(2)       --------                                                                    --------->ARR14(2)       <------- -------ARR11(3)                   <---------GLK1(1)     <---------AHL20(2)         --------->YAB1 ---------ARR10              --------->CCA1(2)          --------->AHL20(2)      --------->AHL20(2) ------>ARR11(3)            --------->ARR11(3)          <---------AHL20(2)      <---------AHL20(2) -->GT1               --------->TOE1(3)         <-----------GT1<-----------GT1 --------->AHL20(2)   aatctttccaaattccatctaaaaccataagatttagaattctgtatttttaactaaattttttttttcaaatccttcaaaattaataagaatcaaatcc  14877800                           --------->TOE2(3)                          <---------ICU4                          --------->ATHB12                          --------->YAB1                         <---------ATHB12                     --------->AHL20(2)                     <---------AHL20(2)                <---------ARR11(3)          <---------HSFB2a(2)                                                               ---------          --------->HSFB2a(2)           --------->ZAT6                               --------->ANAC46 ->ARR14(2)     <---------GLK1(2)------------>CBF                       <---------YAB1  <---------GLK1(2) --ARR14(2)     --------->ARR11(3)    --------->YAB1          <XXXXXXXXXXXXXXXXXXXXMIR867--------->GLK1(2)   acaagctgttttctagtagatttttaaatcattagttcaataacactagatttcattagagtttttaagaaactatgtttgaataacacagaatttgtaa  14877900                                                                                   ------>ZmHOX2a(2)                                                                <------------CBF  <------ZmHOX2a(2)                                                              <---------AHL20(1)  --------->CCA1(2)                                                              <---------AHL20(2) <---------AGP1                                                              --------->AHL20(2) <---------ARR11(3)                                                             --------->AHL20(2)  <---------ARR14(2)                                                       --------->GLK1(2)         --------->AGP1                                                   --------->YAB1                <-----------ARR10                                                  <---------ATHB12               --------->ARR11(3)             --------->TOE2(3)                ------------>CBF--------->AHL20(1) --------->ARR14(2) <-----------GT1                     --------->YAB1--------->AHL20(2)  --------->DAG2 -->GT1     <---------ANAC55(2)     <-------TEIL--------->WOX13(1)    ---------->DOF2   attttacacaaatcacctaaaatactatattgaatacattcatcttagttcaatcaaattctattaaattgaaaaagcttgaagatctaagttttgtttt  14878000                    <---------ARR11(3)                    --------->ARR11(1)                  --------->ICU4                ---------->DOF2         <-----------GT1             --------->TOE1(3)         --------->ARR11(3)             ----------->GT1     --------->TOE2(3)                                                  -             --------->TOE2(3)  <---------At4g35610                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <------------CBF          --------->At4g35610                     <----------DOF2         <----    <---------AHL20(2)     <----------DOF2                           <-----------GT1<---------At4g35610   --------->AHL20(2)--------->CCA1(2) <---------AHL20(1)      <----------DOF2    <-----------RAV1(2)   tgggtttaaattgaaccgtaaagatttgacttttagcttaatatactgtcttaaactctctctctcttttttttctttatgtcttcaggtacctctagtg  14878100                     --------->At4g35610          <------------CBF       <---------ATHB12   <-------TEIL      <---------At4g35610   ------------>CBF<---------HSFB2a(2)          ------>ZmHOX2a(1) <---------HSFC1(2) ---------->GT1    --------->HSFB2a(2) <-----------ARR10          --------->HSFC1(2) -----ZAT14        <-----------RAV1(2)<---------CCA1(2)     ---------->DOF2                     -----   aagggttcaatgaattgtcttccagatgagcttcttgttcaaatcttatccttccttcccactaaagaagctacttcaacctctcttctctccaagaggt  14878200                                                                                 --------->LBD16                                                                                --------->ANAC58                                                                                --------->ANAC46                                                                               <---------LBD16                                                                           <---------KAN4(2)                                                                           ---------->TaMYB80                                <----------DOF2                     <---------ARR14(2)     ----------          <-----------GT1 <---------ICU4                      --------->DAG2--------->KAN4(1)       < <------ZmHOX2a(1)        --------->YAB1        <----------DOF2  ----------->GT1--------->ANAC58    < ---->ALFIN1          ------>ZmHOX2a(1)  ------->GAMYB       ---------->DOF2<----------TaMYB80      <   ggaggactctatttactctcagtcctaatcttgactttgacaactccctccttttgcaatccaaaaagcgtaaatggaatatgcgcaatattcaaaagag  14878300          <---------LBD16         <---------ANAC46         <---------ANAC58    <------MYB83    --------->MYB52(2)    <---------MYB46(3)    <------MYB46(1)   <---------TOE1(2)   <---------TOE2(2)  <---------MYB52(1)                  <------NtERF2                   ---------->DOF2 <-------GAMYB             <----------DOF2                           --------->AHL20(2) >DOF2   <---------ANAC58 <---------ANAC58                     --------->AHL20(2) ---------ANAC58          <---------ANAC58 ----------->GT1     <---------AHL20(2) ---------ANAC58  <<<<<<<<<<<<<<<<<LFY<---------SPL7      <---------YAB1                      ------- ---------ANAC46----------->GT1  --------->ANAC46<---------AHL20(2)  <---------AHL20(2)----------->GT1   tttcgttggtttcgtggatagtacattggctttacaaggcggtaagggtataaaatcgttctcattaaaatttaaagaaacacttggagatgtaaatggt  14878400                                                              <------ZmHOX2a(1)                                                            <---------TOE2(3)                      --                           <---------ZAT18                  <---------TOE1(3)                     ---                     --------->ANAC55(2)                <---------At4g35610                     -----                  <---------ARR14(2)                  --------->REM1(1)               <---------At4g35610                  --------->ARR14(2)                 <-------TEIL                     --------->At4g35610    <---------TOE2(3)<---------ANAC55(2)          --------->At4g35610             <-----------HVH21<- ---->GT1  --------->MYB46(3)                     <---------At4g35610    --------->ANAC46      ------   gaagttgatgttaaccgatggatatgtaatgcccttgaacacggtgtctctgagcttcatctaaggatagactatacgaagcggtgtcatctcccatccg  14878500                                          ---------->DOF2                                       --------->ZAT6                    <---------ARR11(3)            --------->ANAC58      ----------->GT1                       <---------CCA1(2)         --------->ZAT2           --------->YAB1               <---------MYB46(2) ------->ARR11(3)             --------->ATHB12                 <---------MYB59 ------>GLK1(1)          <---------At4g35610                   <---------MYB111(1)      ---------->DOF2 ---->LBD16 --------->ANAC46 <---------YAB1                  ------->TEIL--------->ARR11(3) <-------- --------ARR11(3)        --------->At4g35610     <---------ANAC58------>MYB83       --------->ZAT6 --->ANAC46 --------->ANAC58<-----------HVH21    <---------ANAC58------>MYB46(1)   <---------ATHB12   aaatcttcaccagcacgaaattggttaagctgtcattggtaacacaaagttgcttcccagttgtacctaattgtatatctctcccatcactaaaggttct  14878600  Previous    Next  AGI:  At3g42770.1    Description:  F-box family protein. Identical to Putative F-box/LRR-repeat protein At3g42770 [Arabidopsis Thaliana] (GB:Q9M190); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G44060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63569.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 14878110    to: 14881071    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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