Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    x                                                          <---------MYB52(1)                      <xx                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <xx                                             --------->ARR14(1)                                 <xxxx                                             --------->CCA1(2)                                  <xxxx                                            <---------ARR11(3)                                  <xxxx                                            --------->ARR11(3)                                  <xxxx                                            --------->ARR14(2)                                 xxxxxx                                            <---------ARR14(2)                                 <xxxxx                                           xxxxxxxxxxxxxxxx>smallRNA(i)                       xxxxxxx       --------->MYB46(3)          --------->ANAC58   <---------At5g28300                     xxxxxxx      -------->P         <---------HSFB2a(2)<---------GLK1(2)                                xxxxxxxx     --------->MYB52(1)  --------->HSFB2a(2)--------->ARR11(1)                               <-------   <---------MYB52(2)  <-----------GT1    ----------->ARR10     ---------->DOF2     <---------TOE1(3) ----->ANAC58     --------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           <---------TOE2(3) ----->ANAC58     <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <---------At5g28300 ---->DOF2       --------->AHL20(2)--------->ANAC58 <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)      ---------- ---AHL20(2)--------->AHL20(2)  --------->ZAT18     ----------->HVH21             <-----------GT1<xxx -----AGL15--------->AHL20(2)  --------->ALFIN1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------MYB52(1)   agcaaactaaccattaaaaaaaaatttacagaagtggacgaaaaaagatttgctctcaccgtttgtcaaagtgagaactggtttttacggtttgtctttt  14855800                                                          =============================RAV                                                          ----------->RAV1(1)                                                        --------->SPL7                                                        --------->ZAT14                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->At4g35610                 <-----------GT1                        <---------ZAT14              ------>MYB46(1)                   <---------MYB59 xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        xxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------ICU4     --------->ALFIN1 xxxxxxxxxxxxxxxxxxxsmallRNA(si3)   -------->HAHB4------>MYB83 xxxxxxxxxxxxxxxxxxxsmallRNA(le3)   --------->YAB1------>MYB46(1)            <-------GAMYB xxxxxxxxxxxxxxxxxxxsmallRNA(s2)   --------->ICU4 --------->MYB52(1)         <---------At4g35610 xxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)        <-----------RAV1(2)      - xxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)      <-------TEIL              < xxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ARR14(2)            xxx xxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------At4g35610                  xxxxx xxxxxxxxxxxxxx>smallRNA(le3) --------->TOE2(3) --------->AtMYB61   --------->ARR14(2)        ------>MYB46(1) ---DOF2      ------>MYB83<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <---------ANAC58             ------>MYB83 >ID1       <---------MYB59xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <---------ANAC58           --------- xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------ATHB51    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<--------   cattcaatttcggaccaaattaccttgggaaaacttaataatggcacaaaccaaaccgtgcagcagttcgtatcggttcagttgatggcataaaccaaac  14855900                   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         <------MYB83<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         <------MYB46(1)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <xxxxxxxxxxxxxxxxsmallRNA(s)         <---------MYB46(3)       <---------MYB52(1)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      <xxxxxxxxxxxxxxxxsmallRNA(s)     xxxxxxxxxxxxxxxx>smallRNA(i)   <xxxxxxxxxxxxxxxxsmallRNA(i)     <---------MYB46(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     xxxxxxxxxxxxxxxxxxx>smallRNA(se3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------At4g35610xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(i)   <-------TEIL       ------------------------>ANAC81 --------->DOF2 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <----------ID1                              ---------->DOF2 xxxxxxxxxxxxx>smallRNA(s)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   <----------ID1 xxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(i)                      ---------->DOF2 >AtMYB61xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(i)        --------->MYB52(1) -MYB59<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)---------->DOF2        <xxxxxxxxxxxxxxxxsmallRNA(le3)  xxx   cctacagcagttggtttcggtttagttgatgcggttcagttttgaaaaagacaaaacaaaaaaactgaaacgaagaaaccgaagaaaaagaaaaagagaa  14856000                                                                                            <-------GAMYB                                                                                           --------->MYB52(2)                                                                                           <---------MYB46(3)                                                                                           --------->MYB111(2)                                                                                           --------->MYB111(1)                                                                                           --------->MYB46(2)                                                                                           --------->MYB55(2)                                                                                          <--------P                                                                                        <------MYB46(1)                                                                                        <---------ANAC46                                                                                        <---------ANAC58                                                                                        <------MYB83                                                                                        <---------ANAC58                                                                                       --------->MYB59                                                                                       <---------MYB46(3)                                                                                   --------->ATHB12                                                                                   <-----------RAV1(1)             --------->CCA1(2)                    >>>>>>>>>>>>>>>>>LFY          xxxxxxxxxxxxxxxxxxxxx          ----------->ARR10                      --------->ARR14(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      ------->GAMYB                   --------->ANAC58                  <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------ANAC46           <xxxxxxxxxxxxxxxxsmallRNA(i)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    >>>>>>>>>MYB98             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <---------MYB59 --------->MYB55(2)   --------->MYB52(1)        ---------->DOF2     <---------ARR14(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   --------->ANAC58              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   gagagtaacggagagatttgagagagaattagaaagcgaaacgaaattcagtatccattgtttcaaaattcgacataacttcgaattgttgggtagttga  14856100                                                      --------->ANAC58                                                      --------->ANAC58                                                  <------NtERF2                                                 --------->LBD16                                                 ------>NtERF2                      <---------LBD16           <---------LBD16                      --------->LBD16           --------->LBD16                     <---------LBD16        <-----------GT1--------->ANAC58                    <---------LBD16        <xxxxxxxxxxxxxxxxsmallRNA(i)                  --------->ARR14(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <---------ARR14(2)   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 <---------ALFIN1    <---------At5g28300   --------->ANAC58                       xxx          --------->GLK1(1)         <-----------GT1 <---------ATERF1(1)                           <--          <---------GLK1(1)        xxxxxxxxxxxxxxxx>smallRNA(i) --------->DAG2                   <---        <---------ZAT14           <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<-----------GT1--------->ANAC58--        --------->ZAT14           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<---------At5g28300      -------        <---------ZAT18          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->KAN4(2)------->TEIL >smallRNA(si3)<---------ALFIN1---------->DOF2 <---------LBD16 ---------->DOF2     --------->ANAC58--   attgagtcactgaactcccacatccggggaagagaaagttactgtttttcccggcgaagccaagaaaaagttactgtttattccgacgaaatttgaacct  14856200                                                                                 --------->GLK1(2)                                                                       --------->ANAC46                                                                      --------->LBD16                                                                      <---------LBD16                                                                     <-----------RAV1(2)                                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                          <---------At4g35610  ---------->DOF2                                                          --------->At4g35610<------ZmHOX2a(1)                                                       xxxxxxxxxxxxxxxx>smallRNA(i)<---------ANAC46                                                       <------ZmHOX2a(1)<xxxxxxxxxxxxxxxxsmallRNA(i)                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        <---------ANAC46            xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  --------->LBD16  <---------LBD16 -------DEAR3(1)        <---------ANAC58           --------->LBD16xxxxxxxxxxxxxxxx>smallRNA(i) ------LBD16            <---------ANAC58           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------->LBD16          *TSS          --------->MYB52(1)<xxxxxxxxxxxxxxxxxsmallRNA(si3)          ---- -->MYB46(3) --------->TOE2(3)   --------->DAG2    xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)----------->GT1 ---->NtERF2 <----------DOF2    ---------->DOF2   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <---   ccggcgagatagcaactttagctatggctgggaataaagcaaacgaagaagtcccgaggaagcagcatggtccagggaaggagaagcgggtattaagagt  14856300                                      --------->ARR14(2)                                      <---------ARR14(2)                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                           xxxxxxxxxxxxxxxx>smallRNA(i)                       <---------ANAC58                           --------->ANAC58                                   <---------ANAC46    <--              <xxxxxxxxxxxxxxxxsmallRNA(i)                                    <---------ANAC58    <--          <---------ARR14(2)     ------->GAMYB               <---------At5g28300              -------          --------->ARR14(2)  --------->MYB52(1)  --------->GLK1(2)       <----------DOF2  ----------   --------->LBD16         --------->ANAC58    ----------->ARR10 <---------MYB52(1)  <xxxxxxxxxxxxxxx  --------->ANAC46      ---------->DOF2<xxxxxxxxxxxxxxxxsmallRNA(s)       --------------------->WRI1 <---------LBD16     xxxxxxxxxxxxxxxx>smallRNA(s)<---------GLK1(2) --------->MYB52(2)--------->YAB1 ----->ARR14(2)      ----------->RAV1(1)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxx ------ARR14(2)     ----------->HVH21<------ZmHOX2a(1)      <-----------GT1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ttccccgcagagaaaacgctctgcgacaaaggcaacggaggaactgggttagaatctctaatttaccgtttgttttctttgggtgtatcagaattgtaaa  14856400                                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                               <------ZmHOX2a(1)                                             <---------TOE2(3)                                          <----------DOF2                                       <---------ARR11(1)                                       <---------ARR14(2)                              --------->LBD16                                       --------->ARR11(3)                              ------>NtERF2                                       --------->ARR14(2)                             --------->ANAC46 -------ANAC58                         <---------ARR11(3)                            <---------LBD16 -------ANAC58                        --------->GLK1(1)                             <xxxxxxxxxxxxxxxx --->DOF2    ----------->GT1          <---------ARR14(1)                           <---------ARR14(2) ->GT1   ---------->DOF2              <---------GLK1(1)                            --------->ARR14(2) xxxxxxxxsmallRNA(si3)                <---------CCA1(2)                   <---------GLK1(1)        -- xxxxxxsmallRNA(fl3)             <-----------GT1 ----------->GT1          --------->GLK1(1)      <---   gcttgtttgattaaagggttagaactagtcggaatttagcatatctttaggatgaaaaattgagaagtagaattggaaatctctgtttccgccaaaaata  14856500                                    --------->ZAT6                                   --------->ZAT14               --------->HSFB2a(2) <-------TEIL             --------->AHL20(1)               <---------HSFB2a(2) --------->ZAT18 <---------ANAC58              <---------LBD16    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->AHL20(2)        --------->YAB1         --------------->AtSPL8       <---------ARR11(3) <xxxxxxxxxxxxxxxxxxxxx xxxxxxxsmallRNA(i2)           ------->TEIL    <---------MYB52(1) <---------ANAC55(2)    --------->ALFIN1 ------->ARR11(3)          <---------------AtSPL3  <---------ANAC58   <---------AHL20(2) <-----------RAV1(1) ------YAB1 --------->GLK1(2)  --------------->AtSPL3       <---------AHL20(1) <---------MYB52(1)   tgattttgagttataatctggaaaatgtctgtgtacgtacactacttcggtttgcttaacaatatatcacgtttaattgcaggtagtccaagtgttgctc  14856600        ------>ZmHOX2a(2)       <------ZmHOX2a(2)      --------->ARR14(3)      <---------ARR14(3)      <-----------ARR10      --------->ARR11(3)      --------->ARR14(2)                                           ---------->DOF2         --------->LBD16      <---------ARR14(2)              <----------DOF2         --------->LBD16    --------->SPL7 <----      <---------ARR11(3)  --------->MYB46(3)        <---------MYB52(1)          <XXXXXXXXXXXXXXXXXXXXMIR826      <---------AGP1     <---------At5g28300      --------------->AtSPL3     --------------->AtSPL8 xxsmallRNA(fl3)        <-----------GT1           --------------->AtSPL8   ------->TEIL  <---------LBD16   cgattgaagatcttacagttgaagagttaccaccaagactctttgctatagaccggtacccttccgagacaaagatgaacgcgtactctaaaccggagta  14856700  Previous    Next  AGI:  At3g42730.1    Description:  transposable element gene. similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G36860.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G34740.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) Range:  from: 14856224    to: 14862091    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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