Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       <----------DOF2 --------TGA1a                                                          <---------ANAC58 --------O2                              <---------YAB1                <---------ZAT2 ------->O2                      --------->YAB1                  --------->TOE1(2) ------->TGA1a              --------->TOE1(3)                ------>ZmHOX2a(1) ---YAB1                    <---------DAG2  <---------WOX13(1)  ----------->RAV1(2) -ICU4                      --------->TOE2(3)         --------->AHL20(2)<---------ANAC58         ---- >YAB1           <----------DOF2<---------YAB1      --------->YAB1------>ZmHOX2a(1)        <<<<<<<<<TBF1   gacgtctctttcatgttgtcttttctctaaccttatgatggctctgattaacaaaaataaatcctctcctgcgagcttgtgtaacatgggttcttcttcc  14851800                                                                  --------->PCF2                                                                  <---------ZAT18                                                               <---------ANAC58                                                      <---------HSFC1(1)                                                      --------->HSFB2a(2)                                                 <---------HSFB2a(1)                                                 --------->HSFC1(2)  --------->ANAC46                 <---------MYB52(1)    <---------ARR14(2)      <---------ANAC58            --------->DEAR3(1)        --------->ATHB12--------->HSFC1(1)               --------->GLK1(1)          ------->TEIL               <---------ATHB12 <---------HSFB2a(2)       --------->ETT(2) --------------------->WRI1     --------->ANAC58 --------->HSFB2a(1)--------->ZAT18    <---------GLK1(1) ------->RAV1(2)<-------GAMYB   --------->ANAC58 <---------HSFC1(2) --------->MYB46(3) --------->ARR14(2)   cctgcgagaatgcatcgccgttggaagctctgagacccaaggattgggagaagcttctagaaattcagtgcccaccaagtgttcgacagaattctcaaga  14851900                              --------->At4g35610                              --------->ZAT2                              <---------At4g35610                                                   <                         <---------ANAC58                                                       <----                         <---------ANAC58                                                   <--------                   <---------ANAC46                                                        --------->MYB52(2)                   <------MYB83                                                           <-------TEIL                   <---------ANAC58           <---------ANAC58                         --------->MYB55(2)                   <------MYB46(1)            <---------ANAC58                         <---------MYB46(3)                   <---------ANAC58<---------ANAC46    <---------ZAT2                 --------->ALFIN1              <-----------RAV1(1)  <---------O2        <---------At4g35610            <--------------   gagatgtctgggttttttgttgggtttgcttcagctctcgtggtgatgacttgatggagctcgtgatgctcttggttcttcatcttaggtggttcgtcac  14852000       --------->LBD16                                        <---------ANAC58      <---------LBD16                        --------->ARR14(2)     <---------LBD16                    --------->O2          <---------ANAC58 ---------CCA1(2)              --------->ANAC58               <---------AtLEC2 -----ANAC46                   --------->ANAC46             <---------YAB1                <---------GLK1(2) ---HVH21                      --------->ANAC58     ------>ZmHOX2a(1)           --------->ANAC58 -AtSPL3--------->LBD16       <---------LBD16<---------ARR14(2)                 --------->ANAC58   ttgtatcaccgggaaaaactttgcaaatatttcacggatgcctcgtcgatactcctcttgttgtgcttggagcctttggacgacggaatcgagcttctct  14852100                                                                                                    <                                                                                                 ----                                                                                             --------                                                                                             --------                                                                                           ----------                                                                                         <---------ATHB12                                    --------->CCA1(2)                                  xxxxxxxxxxxxxx                                    <------ZmHOX2a(2)                                 xxxxxxxxxxxxxxx                                   --------->ARR14(2)                                 xxxxxxxxxxxxxxx                                   <---------ARR14(2)                                 xxxxxxxxxxxxxxx                                   <---------AGP1                                     xxxxxxxxxxxxxxx                                   --------->AGP1                                    ------------>CBF                                   <---------ARR14(3)                              xxxxxxxxxxxxxxxxxx                                   <---------ARR11(3)                              xxxxxxxxxxxxxxxxxx                                   --------->ARR14(3)                              xxxxxxxxxxxxxxxxxx                            <---------ANAC58        <---------ANAC58      <---------ICU4xxxxxxxxxxxxx                       <---------ICU4------>ZmHOX2a(2)      --------->ZAT2--------->ATHB12--------->YAB1                     <---------ANAC55(2)            <---------ANAC46     --------->ICU4xxxxxxxxxxxxxx                     --------->ANAC55(2)----------->HVH21   --------->At4g35610    xxxxxxxxxxxxxxxxxx                  <------ZmHOX2a(2)--------->ARR11(3)    <---------At4g35610      xxxxxxxxxxxxxxxxxxx             ------->TEIL   <---------ANAC58        <---------ANAC58     <---------YAB1xxxxxxxxxxxxxx   tctaacttctcaacgaatcgatcaagtattgcttcaagatctgtgactgtgatggcttgagcagcttgagtagccatgatttcaactctcaatgaaagca  14852200 ------------CBF -------->CBF ->ANAC58  ----------------->AG ->ANAC58  ----------------->AGL2 >DOF2    <-----------------AGL1 xx>smallRNA(fl3) xx>smallRNA(fl3) xx>smallRNA(le3) xx>smallRNA(si3) xx>smallRNA(se3) xx>smallRNA(se3) xx>smallRNA(si3)                                                                            -------- xx>smallRNA(fl3)                                                                    --------->CCA1(2) xx>smallRNA(le3)                                                                   <---------ARR14(2) xx>smallRNA(le3)                       ---------->DOF2                             --------->ARR14(2) xx>smallRNA(i2)                --------->ANAC55(2)                          <---------At4g35610 xx>smallRNA(se3)               <---------ANAC55(2)                          --------->At4g35610----- xx>smallRNA(se3)              --------->MYB59--------->At4g35610    --------->CCA1(2)<-------TEIL   ccaattgataagacccaaaatgggctatcaagttaagtaatagaaaggagatgagatagtagaagaattagagatgggaagcagaagattcagagaagga  14852300                                                                              --------->TOE2(3)                                                                             ----------->GT1                                                                             <---------ZAT6                --------->At4g35610        --------->YAB1            ---------->DOF2    >>>>>>>>>TBF1                    <----------DOF2         <---------HSFB2a(2) ---------------->ANAC81        <----------DOF2              --------->HSFB2a(2)*TSS              --- ----->DOF2--------->CCA1(2) <-----------GT1          --------->ANAC55(2)   <---------TOE2(3) -------   aaggaagaagaagagatgagatgaagaagataaacttttctttgttcataatcgataagtgtttcagaaacaaaagctaatgttaaatagaagaactaaa  14852400                                                                        ------>ZmHOX2a(2)                                                            <---------------AtSPL8                                                         <-----------HVH21          <-----------ARR10                                <---------At4g35610   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  --------->ANAC58                   --------->GLK1(2) <---------GLK1(1)            <       <----------DOF2     --------->ANAC46      --------->YAB1       <---------ARR11(3)           -- ------>AHL20(2)  --------->ANAC58              <---------ATHB12  --------->TOE2(3) --------->ARR11(3) --->DOF2         --------->ANAC46   <---------MYB52(1) --------->WOX13(1)          <---------ARR11(3)   gaaaataggctttaaacaataagccataaacgacagcccattaggcccaaatcataatctatcaggtaccttgatctcccatctaaaatcttcaccaata  14852500                                                                                               <-----                                                                                       <---------ANAC46                                            <----------DOF2                            <---------ANAC58               --------->ATHB12   <---------ANAC58                                     <---------ANAC58             <-----------HVH21    <---------ANAC58        <---------ARR11(3)          <---------ZAT2      <---------MYB52(1)          <---------AtLEC2        --------->ARR11(3)          --------->ZAT2 ---------ALFIN1                  <---------ANAC46       <---------CCA1(2)   <---------GLK1(2) <----- ------->ZAT14<---------YAB1 <-----------RAV1(1) <----------DOF2         ---------->DOF2       ------   caacactcgttaagttgtcattgggaagagaatgttgcatgtcaagctttcctttcgatatatctctcccagcgctaaaggttctcgctgcttgctctgc  14852600                                                   --------->ZAT2                     <---------ANAC46                                                   --------->At4g35610               --------->LBD16                                                   <---------ZAT2                    ------>NtERF2                                              --------->ARR14(2)                    <---------ANAC46                                              <---------ARR14(2)               <---------ICU4                                        --------->ANAC58                       -------->HAHB4                                        --------->ANAC46   <---------MYB52(1) --------->ICU4    <------ZmHOX2a(1)                   --------->ANAC58  <-------GAMYB    --------->ICU4          <- ----ZAT14                       --------->ANAC46  <---------At4g35610     <---------YAB1<---------ARR14(2) ----ZAT18              --------->WOX13(1)   <---------CCA1(2)           --------->YAB1  --------->ARR14(2) --->ZAT14            <---------YAB1--------->AtMYB61    <-----------RAV1(1)<---------ICU4        <xx   acttgaggacttaacatcagaggtatcattcaaaaacaccacaagtcatatccagcagtctgttgtctaatatcaacataattatgccgcgtattcttgg  14852700  Previous    Next  AGI:  At3g42723.1    Description:  ATP binding / aminoacyl-tRNA ligase/ nucleotide binding. similar to ATP binding / aminoacyl-tRNA ligase/ aspartic-type endopeptidase/ nucleotide binding [Arabidopsis thaliana] (TAIR:AT3G29750.1); contains InterPro domain Aminoacyl-tRNA synthetase, class II (D, K and N); (InterPro:IPR004364) Range:  from: 14849378    to: 14852177    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g42724.1    Description:  pseudogene, F-box protein, similar to F-box protein Range:  from: 14852380    to: 14853626    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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