Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     <---------At4g35610                                                <---------ZAT14                                          <-----------HVH21                                      ===================================HOX2a_HOX2a                                      ------>ZmHOX2a(2)                                     <------ZmHOX2a(2)                                     ====================================HOX2a_HOX2a             <xxx                                    <---------ARR14(2)                                          <xxxx                                    --------->ARR14(2)                   <----------DOF2    ---------                                    <---------ARR11(3)        ---------->DOF2               ---------                  --------->TOE1(3) --------->ARR11(3)      xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxx              ---------->DOF2      --------->GLK1(1)       <---------ANAC55(2)           <---------CCA1(2) ----------DOF2   --------->TOE2(3)<---------GLK1(1)<---------ANAC46<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---->P <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     --------->ZAT14   <------ZmHOX2a(1)<---------WRKY18(1)   acctttagcattctactaaagcttaatcagttttgagagatccctgttactgcagcgtattatgtaaaggaccatctttgtctcttgacctataccttag  14814100                                                       ---------->DOF2    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                  ------->TEIL       <---------ARR14(2)        --------->ATHB12              <---------HSFB2a(2)         <--------P          <------MYB83       <-------TEIL                   --------->ANAC55(2)       <------MYB83          <------MYB46(1) xxxxxxxxxxxxxsmallRNA(i)             <---------ANAC55(2)       <------MYB46(1)      --------->MYB59 xxxxxxxxxxxxsmallRNA(s)       <-----------GT1 <---------ATHB12 ----------->GT1   --------->ALFIN1 >TOE2(3)               <---------ANAC58       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------AtMYB61 >TOE1(3)           ------->TEIL      --------->HSFB2a(2)      <---------AtMYB61 ------->MYC3 xxxxxxxxxxxxsmallRNA(i)<---------ANAC58       <---------YAB1 <---------WOX13(1) <-------MYC3--------   ccaaatgagttcattgctgatgcatttcttgattcacgttccataactaatgaatgttaaagggattggtagatttgaaaacatgtgtaggtcgagcata  14814200                   --------->ANAC46                   --------->ANAC58                                        -------->P                   --------->ANAC58                         <---------TOE1(2)               --------->YAB1                         <---------CCA1(2)    ------>MYB46(1)            --------->YAB1                          --------->YAB1         ------>MYB83          <---------WOX13(1)                 --------->ARR14(2)          <---------MYB111(1)        --------->ATHB12                     <---------ARR14(2)          <---------MYB111(2)       xx      <---------WOX13(1)                    <------ZmHOX2a(1) <---------ANAC46                   xxxx     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  ==============HOX2a_HOX2a  -------->P            -------- ->YAB1--------->ICU4         <---------TOE2(3)    <------ZmHOX2a(2) --------->MYB46(3)      <-------   agagtcggattgattaataacaaggcatggctaatgtttttgagtaggattcgatcatatcgtagcttagaactaccaacttggacatcgatttcatctg  14814300                                                                                                   --          <----------DOF2                                                                 <----------DOF2     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                              <---------ANAC58  <---------ANAC58    <-----------RAV1(1)                        <---------ZAT2     <---------ANAC58       <---------ANAC58 xxxxxxxxxxxxxx>smallRNA(i)            <---------ALFIN1           <---------ANAC58   <---------ANAC58 xxxxxxxxxxxx>smallRNA(i)            --------->AtMYB61        <---------ANAC58       <---------ANAC58 ->At4g35610                      <-----------GT1      <----------DOF2 <---------ANAC58  <---------ANAC46 --At4g35610                 <----------DOF2   --------->ZAT2 <---------ANAC58<----------DOF2      --   atttatctggtgctttggctctgagtccctgcttttaaacctcacctccagcttgttctttattgtttgcttagcttgttctttattgtttgcttgaggg  14814400                                                                         <-----------ARR10                                                                         --------->ARR14(2)                                                                         --------->ARR11(3)                                                                         <---------ARR14(2)                          <--------P                                     <---------ARR11(3)                        <------MYB83                                    <---------CCA1(2)                        <------MYB46(1)                            --------->YAB1                      <--------P                              <---------DAG2                     <-------GAMYB               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              --------->ALFIN1                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          <---------TOE2(3)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <xxxxxxxxxxxxxxxxsmallRNA(i)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxsmallRNA(i)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <xxxxxxxxxxxxxxxxsmallRNA(se3)  ---------->DOF2   --------->ALFIN1       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <-----------GT1 ------->ANAC58<---------ANAC46       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  >>>>>>>>>>>>>>>>>LFY    < ------->ANAC58<---------LBD16    <---------AtLEC2            <----------DOF2 <---------ALFIN1    ---   caagcaaagactaagtttgggggagttggtaagtgtgcatgttttgagcatccatttgtcatcactttagcatcatatctccactgttttataccatctc  14814500                                                  <---------ARR14(2)                                                  --------->ARR14(2)                                          <-----------RAV1(1)                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                         ------->TEIL                                    <---------ANAC58                                    <---------ANAC58   <-----------RAV1(1)                                    <---------AtLEC2   =====================RAV                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)               <---------MYB46(3)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ----------->GT1                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->ANAC55(2) --------->ATHB12           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------TOE1(3) <---------ICU4          <---------YAB1 <---------AtLEC2        <-----------RAV1(2) ---------YAB1        *TSS<------ZmHOX2a(1)      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------>YAB1  <----------DOF2   xxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------TOE2(3)   tcatcatttgtcatcactttgaatgttaggatagttttgcatgcatgttgcatatttgtgttgttttcaggtaatttggagttgttgacgagctaattgg  14814600                                                                                          xxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <---------LBD16                                                                                   <---------ATERF1(1)                                  --------->STY1(1)   --------->LBD16         --------->ANAC58                         --------->ANAC46             ------>ZmHOX2a(1)       --------->ANAC58                       <-----------GT1           --------->DEAR3(1)        --------->WRKY18(1)                      --------->ARR14(2)       ------>NtERF2               ----------->HVH21             --------->YAB1       <---------STY1(1) ----------->RAV1(2)  --------->LBD16  <xxxxxxxxxx    <---------ZAT18   <---------ARR11(3)    --------->SPL7 <----------DOF2<-----------HVH21        --    --------->ZAT18   <---------ARR14(2)<---------------AtSPL3         <---------LBD16--------->LBD16   aagaagtggacttgatcatatcaatatactcgacccctaggtcgagtaccgccatcctggactttctgaagtacccggtcacggcctccgcataacatca  14814700        <---------ALFIN1      ----------->RAV1(1)   --------->RAP2.6(2)                                           ----------->RAV1(2)   --------->ANAC58                                             xxxxxxxxxxxxxxxx>smallRNA(s)   --------->ANAC46                                            xxxxxxxxxxxxxxxx>smallRNA(s)   --------->ANAC58                                 --------->ZAT6 xxxxxxxxxx>smallRNA(se3)                          --------->MYB46(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxsmallRNA(si3)                          xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->TOE2(3) xxxxxxxsmallRNA(si3)               --------->bZIP60(1)      <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxsmallRNA(i)                  <---------bZIP60(1)     <xxxxxxxxxxxxxxxxsmallRNA(i) --------->HVH21    --------->MYB46(3)    <---------ALFIN1 <xxxxxxxxxxxxxxxxsmallRNA(i)        ------   ctcgaccgcaacactctggataaccactcgagtagatggcatcaccacttctcaccactactcgaccccctggtcgagtagacaacctcatcacttcaca  14814800                                                                                       xxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                   <---------ZAT18                                                                             <---------ICU4                                                                            <---------YAB1                                                                            --------->ICU4     <-----                                                                        <-----------TGA1      ------>MYB83                                                                       --------->ANAC55(2)    ------>MYB46(1)                                  <-----------HVH21                    <---------ANAC55(2)   --------                              <---------ALFIN1                         --------->bZIP60(2)  ---------                           --------->AtMYB61                       <-----------HVH21<---------ALFIN1 --------->ZAT6       --------->SPL7            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ANAC46 --->ANAC46       <---------------AtSPL3   <------ZmHOX2a(2)     <------NtERF2   <---------ZAT18   tcaccactagaccctctggtcgagtaccaccatcaccttcactcgatcactcactagattacatggccgagtcccgtcatcatcgcacactcgaccaatc  14814900                                                                                              -------                                                                                          <xxxxxxxxxx                                                                                         --------->ANAC46                                                                                      ===============                                                                                      -------->P                                                                                  --------->ANAC58                                                                                  --------->ANAC46                                  --------->ANAC46                              <---------ALFIN1    --------->AtMYB61           <---------ALFIN1                               <xxxxxxxxxxxxxxxxxxxxx   --------->MYB46(3)        --------->ANAC46                                  --------->ZAT14<------   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                       --------->LBD16-------  xxxxxxxxxxxxxxxx>smallRNA(s)  --------->AtMYB61        <---------ZAT2        --------->ZAT18<------ xxxxxx>smallRNA(si3)       --------->MYB46(3)           --------->At4g35610   <---------ZAT18======= xxxxxx>smallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <---------GLK1(2) --------->ANAC58 ----ATHB12           --------->AtMYB61                  --------->ZAT2      <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ->WOX13(1)      --------->SPL7--------->MYB46(3)        <---------At4g35610xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) >AtMYB61    --------------->AtSPL8 --------->ANAC46    <---------TOE1(2)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   actctaccaccaagtcgagtaccaccatcatccaccactcgacatcatactcgactcccagcttcagagtcttctccattccgcactcaaccagacactt  14815000  Previous    Next  AGI:  At3g42719.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 14814522    to: 14815187    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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