Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             --------->ZAT2                           <---------ANAC58                <---------ZAT2                           <---------ANAC46                <---------At4g35610                           <---------ANAC58                --------->At4g35610                    ---                       <-------GAMYB                     <-----------RAV1(2)                 <-------                      <------MYB83                    --------->ZAT14                        <-------                      <---------MYB46(3)              --------->ZAT18                        <-------                      <---------DEAR3(2)              <---------ZAT14                 --------->ANAC58                      <------MYB46(1)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) --------->ANAC58                      --------->MYB52(2)      --------->YAB1               xxxxxxxxxxxxxxxx>smallRNA(i)                     <---------DEAR3(1)      <------ZmHOX2a(2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             --------->ATHB12               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)    <---------REM1(2) <------ZmHOX2a(1) <-----------HVH21        <---------ARR11(3)         ---------->DOF2--------->ANAC46   cgaggaaggcgagaatgtttgggtcggttgcgctcaagtacttcacgatcatcaagtgctcagctgcaatttgcaaagcctcttcttcacgctctgcttg  14774000                                      <---------At4g35610                                      --------->At4g35610                     <---------MYB52(1)     <---------ANAC46             ------>ZmHOX2a(1)                         --------->HSFB2a(2)     <---------ANAC58            --------->TOE2(3)                         <---------ANAC46     <----     <---------ANAC58            --------->TOE1(3)                     <----------DOF2          <---- ------->DOF2               <---------At4g35610           ---------->DOF2  <---------LBD16     <----- --ANAC58                   --------->At4g35610     <---------ANAC58   <---------DAG2         <------ --ANAC46                <---------MYB52(1)         <---------ANAC58--------->ARR11(3)  <----------DOF2 --ANAC58                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <---------ARR11(3)<---------At4g35610   taaagtttcttgttccttcattttgcagttagcttccttaagctgtgtttgcaggcttgtgaaagaagaagagcttttcgggtacttccgcttctcgttg  14774100                                                       <---------ANAC58                                                       <---------ANAC58                                                       <---------ANAC46                                          <---------MYB52(1)                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        <---------ANAC58  --------->ZAT18                                        <---------ANAC58  xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                            <---------ARR14(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                            --------->KAN4(2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                            --------->ARR14(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           <---------HSFB2a(1)       <---------ZAT14                           <---------KAN4(1)         --------->ZAT14                           --------->KAN4(1)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           --------->HSFB2a(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --MYB83------>ZmHOX2a(1)  <----------TaMYB80 ----------->HVH21 --MYB46(1)               <---------KAN4(2) --------->MYB52(2)         ---------->DOF2 ----AtMYB61        <----------DOF2------>ZmHOX2a(1)xxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---MYB52(1)        --------->TOE2(3)   <---------ANAC46 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   gtgtaatttcctactcttctaactttagaatattctcctatgtcgtttgtgacagtagagtgcataaacaaaacaaagaatattagttcttaacagtttt  14774200                                                    --------->ARR11(3)                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                     --------->ANAC58                            ---------->DOF2     ---------->DOF2                   --------->ANAC58  --------->ANAC58           ============================HOX2a_HOX2a                   --------->ANAC58 <---------ZAT18 <---------GLK1(2)                  --------->DAG2    --------->ZAT18 <---------ARR11(3)  <---------TOE2(3)   xxxxxxxxx                 ---------->DOF2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------YAB1   ------>NtERF2       --------->AHL20(2)  <xxxxxxxxxxxxxxxxxsmallRNA(le3)      ------>ZmHOX2a(1)       --------->ANAC46       --------->YAB1    --------->YAB1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        ------>ZmHOX2a(2)   tcaaaacaataatataagaaaaagcaaacataaagaagcacactacttgaaaaagattttgtcatcctcttcttaagatagctctgatcgacgcgaagta  14774300                                    --------->At4g35610                                    <---------At4g35610                                    --------->ZAT2                                    <---------ZAT2      <---------AHL20(2)                     --------->ANAC58     <----------DOF2                     --------->ANAC58    <---------DAG2--------->AHL20(2)           <-----------TGA1      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          --------->bZIP60(2)  ------>MYB46(1)  <----------DOF2                         <---------DAG2      <---------HSFB2a(1)  >>>>>>>>>MYB2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <----------DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------>NtERF2<---------AHL20(2)                *TSS  --------- xxxxxxxxxxxxxx>smallRNA(fl3)  ------>MYB83   ---------->ID1  ------->TEIL           ------->TEIL   ccatcggaagactcgtcattctcaaggaaaaccaacttagctgcctttttctttttatttaatgaacttcttgtaatatgacccatgaaactttttgtaa  14774400                                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                      ------------>CBF                 <--------P                                          --------->ANAC58                <---------MYB52(1)                                   --------->AtLEC2               --------->LBD16                                       --------->ANAC58             <---------LBD16                 ------>MYB83         <-------TEIL                     <-          --------->YAB1                   --------->TOE1(2) --------->AHL20(2)                    <-         --------->ICU4               --------->YAB1      --------->AHL20(2)              ---------->DOF2 --------->TOE2(3)    <----------DOF2<---------YAB1      --------->AHL20(2)--------->YAB1--------->AHL20(2) -->GT1  <---------ATHB12      ---------->ID1------>MYB46(1) <---------AHL20(2)     ------------>CBF   aaacctttgtaatcatccggtaagctttaacttgttcttatcatacctacaaacacaaaataaaaaaatgcatgcaattagaaacatacaataaaagaac  14774500                                 ----------->GT1                         --------->ANAC58                         --------->ANAC46                                    <-----------GT1  ------->TEIL           --------->ANAC58        ---------->DOF2             --------->YAB1     <---- --------ATHB12  --------->MYB46(3)             --------->AHL20(2)  ----------->GT1     --------->ZAT6 --------YAB1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            --------->ATHB12  --------->YAB1   <   aatgaatgtaatcttggtaaccactacaagctaaatggaaaattagacaataaaagagcattttcaaagattgaaaaaatcacaattttaagactacaaa  14774600                                                                                              <------                                   --------->AHL20(2)                                         -------                                   <---------AHL20(2)              --------->GLK1(2)         <-------                              --------->AHL20(2)          --------->DOF5.7(2)              <---------ICU4                            --------->TOE2(3)            --------->TOE1(3)                --------->ICU4     --------->YAB1<------ZmHOX2a(2)   --------------->AtSPL8  --------->TOE2(3)   --------->YAB1    <---------ATHB12       --------->YAB1                --------->TOE2(3)        <---------ATHB12  --------->WOX13(1)------>ZmHOX2a(2)  --------------->AtSPL3  ------->GAMYB  <-------TEIL<---------YAB1 -----TOE2(3)     --------->ARR11(3)   <---------------AtSPL8 --------->MYB46(3)--------->WOX13(1) -------TEIL      <---------ARR11(3) <-----------GT1     <----------DOF2 --------->YAB1 --------->YAB1   ggttcaatcaaactacaaacgatcttgaaacataaattttaatcgtacacatattcaaactttaaccacaatctataagattcaatcaaaacataattaa  14774700                                                                                                 ----                                                                                                 ----                                              --------->GLK1(2)                       <xxxxxxxxxxxxxx    <---------AHL20(2)     <----------ID1 --------->ANAC46                   <---------ANAC58    <---   --------->AHL20(2) <---------TOE2(3) ------>ZmHOX2a(1)                    <---------ANAC58    ---- ---AHL20(2) <---------ALFIN1       --------->GLK1(2)                     --------->GLK1(1) <-------- -->AHL20(2)--------->MYB46(3)     <---------GLK1(2)                      <---------GLK1(1) XXXXXXXXX --YAB1--------------->AtSPL8     --------->HSFB2a(1)           ------>ZmHOX2a(1)   --------->GLK1(2)   tgagatttaatcgaaccacattttaagttaagacaaagattcctacacaatctatcttcttaattcctatacagagatttcttgataatctatataacct  14774800                                                                                                    -                                                                                                   --                                                                                          <---------HSFB2a(2)                                                                         <---------MYB46(3)        --    ------>ZmHOX2a(1)                                                   --------->ALFIN1  --------->HSFB2a(2) ----->ARR14(2)                                                <---------ANAC55(2)       ------>ZmHOX2a(2) -->MYB46(1)                                                   --------->ANAC55(2)      <------ZmHOX2a(2) xxxxxxxxsmallRNA(se3)                                      --------->ARR14(2)         --------->ARR14(2) ------ARR14(2)                                             <---------ARR14(2)         <---------ARR14(2) -->MYB83   <---------REM1(2)           --------->AHL20(2)  <---------ARR11(3)<---------HSFB2a(2)---- ---GT1    ------>ZmHOX2a(1)            <---------AHL20(2)  --------->ARR11(3)--------->HSFB2a(2)---- XXXXXXXXXXX>MIR844*     ------>ZmHOX2a(1)                ----------->ARR10<---------ARR14(2)    <---   atcttcctagttcctacacagacattcctagcatctatacaatttataagatggtaagagaagatacttaacaagtggttccagactccgatctgggaga  14774900  Previous    Next  AGI:  At3g42680.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05647.1) Range:  from: 14773857    to: 14774386    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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