Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             <---------CCA1(2)                                                                              --------->HSFB2a(2)   --------->ANAC46                              --------->YAB1               <---------HSFB2a(2) --------->ANAC58                             <----------DOF2              <---------ARR14(2) --------->ANAC58        ---------->DOF2---------->DOF2             <---------ZAT14        <---------At4g35610 --------->ANAC46  ----------->GT1     <---------AHL20(2)  ---------->DOF2 --------->ARR14(2)     ---   cacacacaaaacgtttcaaaacagcaaaaatgcgcatagatttaaagactttcatattgaagaaagtgaatgtactggttctggagtctcttcatctctc  14770700                                                               <---------ANAC58     ----------->HVH21                                                   ---------->DOF2   ------>ZmHOX2a(2)                                         <---------ZAT14       <---------ANAC58   --------->At4g35610       --------->ANAC58          ---------->DOF2 <------ZmHOX2a(2) <---------ARR11(3)     -----------       --------->ANAC58--------->LBD16   --------->ZAT14    <----------DOF2    --------->HSFB2a(1) ---------->DOF2     <---------LBD16 <---------------AtSPL8<---------DAG2      <---------HSFC1(2) ------>YAB1        --------->MYB52(1)   <-------TEIL     <------NtERF2        --------->HSFC1(2)   tgataaagaacgcaaacatcgataccgggtcttaaaaaagaagtacagtcgatcaaagtcgcctttcttgatctaattcgaagcctctgaaatggtttta  14770800                                                                                              <------                                                                     --------->ANAC46   --------->At4g35610                                                                     --------->ANAC58   <---------At4g35610                                                                   <---------ALFIN1     <---------ZAT2                                                         ------>ZmHOX2a(1)              --------->ZAT2                                                        --------->TOE2(3)              ----------->RAV1(1)                                    <---------YAB1      --------->TOE1(3)             <-----------RAV1(2)                             --------->ANAC58         <------ZmHOX2a(2)          ---------->ARF1                             --------->ANAC58        --------->ARR14(2)         <-----------HVH21 >GT1        ---------->ID1--------->CCA1(2)      <---------HSFB2a(2)--------->ANAC58--------->LBD16   tatcatccaaaacttgtccattttctaagagacgcattgtcatcgttccattctcgatccttaagtactccacggccttccatgtcccccagcagaacac  14770900               ------->GAMYB                                                          --------->AHL20(2)              --------->MYB46(3)                                                    --------->ANAC58         --------->AtMYB61                                                          --------->ANAC58       -------->P                                            --------->TOE2(3) --------->MYB59    --------->At4g35610                        --------->ZAT14                 <---------TOE2(3)    <---------At4g35610               ---------->DOF2     <---------CCA1(2)    <---------TOE1(3)   --------->ANAC58               --------->MYB59     --------->AtLEC2   <---------------AGL15   --------->ANAC58               <---------TOE1(3)  --------->WOX13(1) <-----------------AG ---------->DOF2     --------->MYB52(1)        --------->At4g35610    ----------->HVH21    --------->AHL20(2) ---ALFIN1  ----------->RAV1(1)   <---------TOE2(3)<---------ATHB12 <---------AtLEC2----------->GT1 <   ctcgaaagctaccacaacagacaaaacagagcattttaggtaaagaaacagcagtcattcaaatctcaatgcatgacattttaggtaagaaaataaaaca  14771000     ----------->GT1   ------>ZmHOX2a(2)  <------ZmHOX2a(2)                                                                                 - <---------ARR11(3)                                                                                 = <---------ARR14(2)                                                                                == <---------AGP1   --------->ANAC58    <-------GAMYB                                                <- --------->AGP1   --------->ANAC46   ----------->GT1                                    <------ZmHOX2a(2) --------->ARR14(3)                  <------MYB46(1)                                    ============= --------->ARR14(2)                  <---------MYB46(3)     <------------------------ANAC81       <-- <---------ARR14(3)          <---------AHL20(2)          <----------DOF2   <----------DOF2        --- --------->ARR11(3)         --------->AHL20(2) ---------->DOF2          <-----------GT1--------->ARR11(3) ---------CCA1(2) --------->ANAC58   <------MYB83     --------->ICU4 <---------AHL20(2)<---------ARR11(3)   tcagatcttgtaaaacacttacgacatggattaaatggatggttaaactcaaagtaatgctttctcttcatttttttctttcccttcaagatcacttgtg  14771100               ------>ZmHOX2a(1)             ----------->RAV1(2)           ------>ZmHOX2a(2)          <---------GLK1(1)          --------->GLK1(1)         --------->ARR11(3)         <---------ARR11(3) ----->ZmHOX2a(2) =====================HOX2a_HOX2a                                                   <---------DAG2 =====================HOX2a_HOX2a              <-------TEIL----------->HVH21  <-------TEIL -----ZmHOX2a(2)                            <------ZmHOX2a(1)     --------->AHL20(2)<----------DOF2 =====================HOX2a_HOX2a          <---------YAB1--------->O2        --------->CCA1(2) -------ARR14(2)    ------------>CBF <-------TEIL   <-----------GT1--------->AHL20(2) ------>ARR14(2)    --------->MYB46(3)--------->ATHB12 <---------ALFIN1 ---------->DOF2   gatccacatatgatctcctgtaaccaatacatgtatagcttcattaggattcattcaccacttgacaaataaaaaaaagattcaaactttatctgcaact  14771200                                                                         --------------->AtSPL8                                                                         <---------------AtSPL8                                                                        <------------CBF                                                                       --------->ATHB51                                                                      <---------YAB1                                                                      --------->ICU4                                                                  ----------->RAV1(1)        --------->LBD16                                        --------->ANAC58      ----------->GT1      ------->GAMYB           <----------DOF2 <------------CBF --------->ANAC58     --------->DAG2    --------->ANAC58          --------->TOE2(3)  <---------MYB46(3)  --------->TOE2(3) ----------->GT1    --------->ANAC58        ------->TEIL   --------->YAB1    ---------->DOF2      ---------->DOF2   -   agagacaacccagaacatatatgatatatgaactttaaaacttgatcatattggttaatgtgcgaaagcaacattattgtactaaaaaggtgtaaaacag  14771300                                    ------>ZmHOX2a(2)             --------->YAB1     <---------YAB1        <---------ANAC46      --------->YAB1     ------->GAMYB  ----------->GT1        --------->YAB1        <---------ANAC58 --------->ANAC58       --------->MYB46(3)                  --------->YAB1        <---------ANAC58 --------->ANAC46       <---------MYB52(2)             <---------DAG2       <-----------------------TaNAC69(2)     ----------->RAV1(1)        --------->AtMYB61      <-----------HVH21  --------->ANAC58    --------->MYB46(3)<---------WOX13(1)  <---------YAB1 -------->MYB52(1)----------->GT1 <---------ARR11(3)          <------------CBF <----------DOF2   agtaacagtgtcgtatcaaaatgaaaaacgaaacatgatcgtcatcaacaacaaacaaaacccagattgaaaaaaccacaactttatgatcagaacacaa  14771400                                                                                                 ----                                                                                       <---------YAB1            <----------DOF2                        --------->ZAT6                    --------->YAB1        <-----------GT1                        <---------WOX13(1)                    ----------->GT1    <---------AHL20(1)                       --------->ATHB12           <---------------AtSPL8  -----    --------->AHL20(1)                      --------->ICU4  <------ZmHOX2a(1)       <---------YAB1    <---------ARR11(3)---------->DOF2       <---------YAB1 ----------->GT1<----------ID1       ------   aatcaatatatcacctttgagggaaaaagagagttgattctagtccatgattgacactaagaggaaaataagagaaggaacaaaatatgataaatagaaa  14771500                                  <---------ARR14(2)                                  --------->GLK1(2)                                  --------->ARR14(2)                                  <---------ARR11(3)                                  --------->ARR11(3)                                               --                                  <-----------ARR10                 <---------DAG2       --------->ARR14(2)    <------NtERF2           --------->ANAC46               <---------AHL20(2)            <---------GLK1(2)    <---------------------WRI1   <---------GLK1(2)     <---------DAG2                    <---------ARR14(2)  <---------DEAR3(1)        --------->ANAC58           <----------DOF2               --------->LBD16 --------->SPL7             --------->ANAC58        <---------ARR11(3)    <---------AtLEC2--------->GLK1(2) ----->DAG2           <---------ALFIN1          <---------ZAT14 <-----------GT1     <---------ANAC46 ---->DAG2           --------->ZAT14            --------->REM1(2)   <----------DOF2<---------LBD16--- ---->DOF2           <---------ZAT18            --------->ZAT14<-----------GT1 ------->TEIL ---------   agggacggcgaagaattcaataccacactcacgcagaatcttggggacagtgtagaactttttattttccctttttgcatgaatttgcgcagaatcgata  14771600  Previous    Next  AGI:  At3g42670.1    Description:  CHR38 (chromatin remodeling 38); ATP binding / DNA binding / helicase. similar to CHR42 (chromatin remodeling 42), ATP binding / DNA binding / helicase [Arabidopsis thaliana] (TAIR:AT5G20420.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41437.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75315.1); similar to SNF2 domain-containing protein [Olimarabidopsis pumila] (GB:ABA18099.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014001); contain Range:  from: 14766784    to: 14771071    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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