Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     <---------YAB1                <---------YAB1                --------->AHL20(2)            --------->ZAT18                 --------->AHL20(2)      --------->AHL20(2)                      <---------ZAT18               ----------->GT1  <---------AHL20(2)      ------->TEIL--------->LBD16                     ---------->DOF2 --->TEIL       <---------AHL20(2)  <---------LBD16    ---------->DOF2  ------>ZmHOX2a(1) >CCA1(2)  <-------TEIL <---------ZAT18   --------->ALFIN1        <-----------GT1      <---------AtLEC2   atattgaattacatacatattattaatgcacatttttatccggagttgtggaccatagaaagacatattgactcctcaaagtaaattctgcatgttacat  14734900                                                                                         ------>MYB83                                          ----------->GT1                              <---------MYB46(2)                                        <---------ZAT14                                <---------MYB111(2)                                <---------HSFB2a(2)                                    <---------MYB55(2)                                --------->HSFB2a(2)                                    --------->AtMYB61                          <---------------AGL15                                        --------->MYB46(3)                          --------------->AGL15                                        <---------MYB111(1)                         <-----------------AGL3                                       --------->ANAC58                         ----------------->AGL3    <------ZmHOX2a(1)                  --------->ANAC58                      --------->ZAT18   --------->REM1(2)                            ------>NtERF2                      <-------TEIL ---------->DOF2<----------ID1                 --------->ANAC58   -        ----------->GT1  ----------------->AGL2---------->DOF2                   --------->ANAC58   <   --------->YAB1  <---------At4g35610  --------->ZAT14              ---------->DOF2--------->RAP2.6(2)   --------->ATHB12--------->At4g35610 --------->ALFIN1 <------ZmHOX2a(1) <----------DOF2------>MYB46(1)   tgaaatcataggctaaatttgagatgcactatttttagaaagtgtagagaaaaggacaggaagaaataagcgaaagctttggtaagccaccaaacctgat  14735000                      --------->HSFB2a(2)                                 <---------MYB46(3)               --------->DAG2                                            <--------P              ---------->DOF2     --------->MYB59                 ------------>CBF         ----------->GT1      <---------ZAT6                     <<<<<<<<<<<<<<<<<LFY       ---------->DOF2--------->LBD16                         --------->ANAC58 -------->HSFB2a(2)   <---------HSFB2a(2)            <---------AHL20(2)<---------MYB46(3)     <------ ---------HSFB2a(2)  <---------ANAC46 ------>ZmHOX2a(2)       --------->ANAC58             <---------YAB1   tactggaagaaaagaaaaaagttccgagaatagagttagatcgctggtgagggttttaaatggaacacaacaatggttgttttagagtgtgttattcttt  14735100                      <---------ANAC46                      <---------ANAC58                <---------TOE1(2)--------->ANAC46                                     <---------ANAC58     <-----------GT1  <---------ANAC58     ------>ZmHOX2a(1)                          <---------ANAC58 <-----------TBP<---------TOE2(2)--------->ANAC58                          ---------->DOF2 ----DOF2   <---------YAB1       --------->ANAC58                  <------NtERF2      <---------AtLEC2   tgtatttataccttctcataggtttcttgtaatacacgcttcttcctctctctccctctctcttatggcctcgtcttgaaagcgtcttgcatgctaagag  14735200                                                                <---------CCA1(2)                                                            <-----------TBP                                                    <---------ARR11(3)               ----------->GT1                                                    --------->ARR11(3)             <------ZmHOX2a(1)                                                --------->ARR14(2)               <---------TOE2(3)                                                <---------ARR14(2)          <----------DOF2                                         <-------TEIL     <----------DOF2 --------------->AGL15 -----                                        xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------TOE1(3)  <----------DOF2               <---------WOX13(1) <---------CCA1(2)      <---------------AGL15<-----   aaggctttagagcaaggagagaagggagaagttgatttatacgtccatcggatatatcttctttttatatctgtctctcttttaaggaagaaaaatggcg  14735300                                                                                             --------                                                                              ------>ZmHOX2a(2)                                                                             <------ZmHOX2a(2)                                                                            <---------ARR14(2)                                                                            <---------ARR14(3)                                                                            <---------ARR11(3)                                                                            --------->ARR14(2)                                                <---------RVE1(1)           --------->ARR11(3)     --                                  --------->ALFIN1           <---------AHL20(2)              --------       <---------O2   --------->ANAC58         <---------ARR11(3)           --------->ARR14(3)  -----       <---------ANAC46 ---------->DOF2        --------->ARR11(3)           --------->AGP1   <------- ->NtERF2             --------->ANAC58         <---------GLK1(2)       --------->HSFB2a(2)   <------- ----RAP2.6(2)     <---------ATHB12  ------->TEIL   <-----------GT1    <---------HSFB2a(2)   --------   actgaattctcgtgggatgaaatcaagaaagaaaatgtggaccttgtaagatttttacagagtttaattcgttctcgagatcttgaactgttgaaaatct  14735400    <---------YAB1  <---------ICU4                  --------->GLK1(1)  <--------ATHB1                  <---------GLK1(1)  --------->YAB1                  <------ZmHOX2a(2)  <---------AHL20(1)             <---------ARR14(2)  <---------AHL20(2)             --------->ARR14(2)  --------->AHL20(2)            <---------ARR14(1) --------->ICU4            ==============HOX2a_HOX2a <---------ATHB51          <------ZmHOX2a(1) ->GLK1(2)                 ===============HOX2a_HOX2a ------->YAB1        <---------AHL20(2)                    --------->ZAT2 ->ARR11(3)          <---------YAB1                        <---------At4g35610 ------>GT1      --------->AHL20(2)                        <---------ZAT2 --ARR11(3)      <---------AHL20(2)------>ZmHOX2a(2)       --------->At4g35610 --ARR14(2)  --------->ATHB12<---------At4g35610        <---------At4g35610   <---------HSFB2a(1) ->ARR14(2)<---------WOX13(1)--------->At4g35610 --------->ALFIN1       ---------->DOF2   gtaataatttttgaatgatttatattataggagcggatccctgtggaagaagtgtttgagcagctgaaatgctcaaaagaaggtttgtccagcgatgaag  14735500        <---------ANAC58                                                            --------->ARR14(2)        <---------ANAC58  --------->ANAC58--------->GLK1(1)                <-------TEIL ------>ZmHOX2a(1)   ---------->DOF2        --------->ANAC58<---------GLK1(1)      --------->GLK1(2)  <---------ARR14(2)   gtgctaaaaggcttgaaatatttggggcaaacaagcttgaagagaaatcagagaacaagtttttgaaattcttggggttcatgtggaatcctctctcatg  14735600                                                            <---------WOX13(1)                                                           <---------ARR14(2)                                                           <---------GLK1(2)                                                           --------->ARR14(2)                                                         --------->LBD16                                                        <---------ANAC46                                                       <------NtERF2                                                       --------->ATERF1(1)                                                       <---------LBD16                                                      <---------RAP2.3(1)                                                      <---------ORA47(2)                                                      <---------DEAR4(2)                                                      <---------ATERF1(1)                                                      ------>NtERF2                  <---------ICU4                     --------->DEAR3(1)                  --------->YAB1                     <---------RAP2.3(2)                 --------->ICU4                     <---------ABI4(2)                           -----                 <---------ATHB12                 --------->DAG2                           <---------ANAC58               --------->WOX13(1)                ---------->DOF2         <-----------GT1   <---------ANAC46          <---------At4g35610                   ---------->DOF2     --------->ARR11(3)--------->ALFIN1          <---------ZAT2                       <------ZmHOX2a(1)    <---------ARR11(3)<-----------RAV1(1)          --------->At4g35610               <------ZmHOX2a(1)     ----------->ARR10   <---------REM1(1)          --------->ZAT2             --------->MYB52(1)--------->RAP2.3(1)      <---------YAB1 <-----        --------->ZAT18           <---------At4g35610<---------DEAR3(1)<---------AHL20(2)  <---------ANAC58   ggttatggagtctgctgcaatcatggctattgttttagctaatggaggaggaaaggcgccggattggcaagattttatcggtattatggtgttgcttatc  14735700                                                --------->At4g35610                                                <---------At4g35610                                                <---------ZAT2                                                --------->ZAT2  <---------ARR11(1)                                               <-----------RAV1(1)                                     <------NtERF2 <---------At4g35610                        <------ZmHOX2a(1)    ------>NtERF2      <---------ARR11(3)                     --------->HSFB2a(2)     --------->At4g35610<---------ARR14(2)     --------->ANAC58        --------->AtMYB61           ------>NtERF2  --------->At4g35610    ---------->DOF2      ----------->RAV1(1)          <---------ATERF1(2)          --------->GLK1(2)      --------->ANAC58  --------->ANAC46   <---------HSFB2a(2)   <---------RAP2.6(2)  --------->ARR11(3)   --------->CCA1(2) ---->YAB1         <---------------------WRI1<---------At4g35610--------->ARR14(2)<---------TOE1(3) ----YAB1       <-------TEIL       --------->ATERF1(2)         <---------CCA1(2)  <---------TOE2(3)   atcaactccaccataagtttcatcgaggagaacaatgctggcaatgccgctgctgctctcatggcaaatcttgcaccaaagactaaggtatgcaaatttc  14735800  Previous    Next  AGI:  At3g42630.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14190.1); similar to pentatricopeptide repeat protein [Olimarabidopsis pumila] (GB:ABA18097.1); similar to pentatricopeptide repeat protein [Capsella rubella] (GB:ABA18107.1); similar to pentatricopeptide repeat protein [Arabidopsis arenosa] (GB:ABA18111.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 14733236    to: 14734843    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g42640.1    Description:  AHA8 (ARABIDOPSIS H(+)-ATPASE 8); ATPase. Identical to ATPase 8, plasma membrane-type (AHA8) [Arabidopsis Thaliana] (GB:Q9M2A0); similar to AHA6 (ARABIDOPSIS H(+)-ATPASE 6), ATPase [Arabidopsis thaliana] (TAIR:AT2G07560.1); similar to AHA2 (Arabidopsis H(+)-ATPase 2), ATPase [Arabidopsis thaliana] (TAIR:AT4G30190.1); similar to AHA9 (Arabidopsis H(+)-ATPase 9), hydrogen-exporting ATPase, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT1G80660.1); similar to putative plasma membrane ATPase [Olimarabidopsis pumila] (GB:ABA18090.1); similar to putative plasma membrane ATPase [Arabidopsis arenosa] (GB:ABA18112.1); similar to putative pl Range:  from: 14735295    to: 14739196    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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