Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    ------->MYC4                                  <-------MYC2                                  <-------MYC3                                  ------->MYC3                                  <-------MYC4                                  ------->MYC2                                 <---------O2                                 ===========================================bZIP_DOF                                 <---------ANAC55(2)                                 --------->ANAC55(2)                                 <---------TGA1a                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                 --------->O2                     --------->DAG2            ===============================bZIP_DOF              ---------->DOF2      <---------YAB1      =====================================bZIP_DOF          <---------ZAT6         --------->YAB1      ---------->DOF2            --------->TGA1a            <---------YAB1<-------GAMYB             < --------->DOF2            ================bZIP_DOF      <---------MYB52(1)       ----------->GT1  -- -------GT1 ---------->DOF2---------->DOF2               --------->ICU4  <---------MYB46(3)   -------   acaaaagtaaaagtaaaagaattgagacttaaaacacgtgtaagatagatagagttgcagttattgttaaagtgactgttgatttagtataattagatat  14682100                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                   <-                                                                                                   --                                                                                                  ---                                                                                               <-----                                                                                               ======      <---------ARR14(2)                                                                 --------->TOE2(3)  --------->At5g28300                                                                  --------->ARR11(3)  <------NtERF2                                                                     --------->AHL20(2) --------->RAP2.6(2)                                                        <------ZmHOX2a(1)  ====== ----------->GT1                                                            ========================= ----------ID1         <-----------RAV1(1)                                  ========================= ------->At4g35610     --------->ALFIN1     ---------->DOF2        --------->AHL20(2)  <---------ARR11(3) -->CCA1(2)      --------->AHL20(2)       --------->ARR11(3)       <---------AHL20(2)<---------AHL20(2)   aagcggcaaatttgagacataaaatgtgttggagtaagtttgaagataaagacttaagttataagttatttaaatataggattagattaaatcttaagga  14682200       <------ZmHOX2a(1)  ------>ZmHOX2a(2)  ========================HOX2a_HOX2a <------ZmHOX2a(2) =============HOX2a_HOX2a =========================HOX2a_HOX2a -------->AGP1 -------->ARR11(3) ---------ARR11(3) --------GLK1(1) ------->GLK1(1) -------->ARR10 -ZmHOX2a(1)   <<<<<<<<<MYB98  --------->TOE1(3)                               ---------->DOF2<xxxxxx ========HOX2a_HOX2a           --------->YAB1                                  <xxxxxxxxxxxxxxxxxxxxx =======HOX2a_HOX2a            --------->TOE2(3)                           xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) =======HOX2a_HOX2a<------ZmHOX2a(1)   ------>ZmHOX2a(1)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) ========HOX2a_HOX2a      <---------MYB59   <---------YAB1         <---------AHL20(2) <---------AtMYB61   gagatcttaggagttaagttaggagttatctaaccataatcctattgtcattttgttttaaatctctatatatatgagtcccaaagttgtggtgaaccat  14682300                                 --------->MYB59                               <---------ARR11(3)                                 <---------TOE2(3)               ----------->GT1  <----------DOF2                        <---------TOE2(3)             --------->TOE2(3)        --------->ARR11(3) xxxxxxxxxxxxxxxxxxsmallRNA(s2)  <---------TOE1(3)------>ZmHOX2a(1)           <---------CCA1(2) xxsmallRNA(i2)     <----------DOF2              --------->TOE2(3)    --------->ICU4                <   atgagttttagagagattaagactttgagattgtttaggtttgagttatttcctaaacttaataagagagtaattcttatatatctttgagttcttaatc  14682400               <------MYB83              --------->MYB59            <XXXXXXXXXXXXXXXXXXXXXMIR845B           <---------ARR14(2)                       <------------CBF           --------->ARR14(2)               --------->ANAC58           <---------GLK1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           --------->ARR11(1)               --------->ANAC58                        <----------ID1        --------------->AGL15             ---------->DOF2               --------->ATHB12        <---------------AGL15           ==================HOX2a_HOX2a   <---------ICU4        -------       <-----------------AGL3           <------ZmHOX2a(2)        *TSS  <---------YAB1       ---------       <-----------------AGL2   <---------GLK1(2)  <------ZmHOX2a(1)   --------->ICU4      <---------ATHB12 ----------DOF2<------MYB46(1)--------->LBD16  ---------->DOF2<---------YAB1     --------->ZAT14   ttctttgaaactagatttggtatcagagcatccaggttttcgatcaaagcaaaggattgaaaacatgagtgagattattgcagtaaacaacaaatcaaaa  14682500                                                                              --------->ZAT18                                                                              --------->ZAT14                                                                              <---------ZAT18                                                                           <---------At4g35610                                                                           --------->At4g35610          --------->ATHB12                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <---------YAB1                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        --------->ARR11(3)                                        <---------TOE2(3)        <---------ARR11(3)               --------->ZAT6     <---------ANAC46  <---------ZAT14       <    <------ZmHOX2a(1)       <---------TOE1(1)             <---------ANAC46 --------->ZAT2     ------- --->DOF2<------ZmHOX2a(2)  <---------TOE2(1)            <---------AtMYB61 <---------ZAT2    -------- >YAB1 <------ZmHOX2a(1) <-----------HVH21          --------->ANAC46<------ZmHOX2a(1)    --------->ZAT18   gatggaggaggatcattgtctattcaatgtccgatgttgaataacacaaactatacggtatggtgtatgaggatggaagctgcactacgagtgcataaag  14682600                ------>ZmHOX2a(1)                --------->LBD16             <------ZmHOX2a(2)      --------->KAN4(1)      --------->MYB46(3)   <---------------------WRI1                              <---------ANAC55(2)      <---------HSFB2a(1) <------ZmHOX2a(1)                                        --------->ANAC55(2)     <---------KAN4(2)   <----------ID1                                        <-----------HVH21 ---------LBD16<---------LBD16                ------>MYB83                  --------->LBD16 -->DAG2     ====================HOX2a_HOX2a  ------>MYB46(1)             <---------LBD16 -->DOF2    <---------ARR14(2)   ----------->GT1                    <---------ATHB12   <---------YAB1   tctggggaacaatcgatcctggattagaggacgaagagaaaaacgacctagcccgagcccttctcttccaatctattccggagtcacttattcttcaagt  14682700                                                       --------->At4g35610     <----------ID1                                               --------->GLK1(2)        --------->ANAC58                                              <---------GLK1(2)         --------->ANAC58                                             <------ZmHOX2a(1)     ---------->DOF2               ---------->DOF2      <-------TEIL       <---------At4g35610 ---------->DOF2       <---   cggaaaactgaagacttcaaaggcagtatgggataagattcaatctaggaatcttggagcagaacgagtcaaagaagcaaagctacaaactcttatggca  14682800                                                                                              <------                                                                                              -------                                                                                              -------                                                                                              <------                                                                                              <------                             ------->TEIL                 --------->HSFB2a(2)                 -------                           --------->YAB1                 <---------HSFB2a(2)      <----------DOF2                     <------ZmHOX2a(1)        <---------AtLEC2                  <---------ARR11(3) ---NtERF2      <---------REM1(1)        ------->TEIL  <----------DOF2      --------->YAB1  ---------   gagtttgacaaactcaagatgaaggacaatgaaactattgatgaatttgcagggagactttcagaaatttcaacaaaatcagcatctttgggagaagata  14682900                                                                                    >>>>>>>ZML2                                                                                    <---------HSFB2a(2)                                                                                    --------->HSFB2a(2)        ---------->DOF2                                                             <---------HSFC1(1) ---ARR14(2)                               ---------->DOF2                          --------->HSFC1(1) -->ARR11(3)                             --------->ANAC58                        --------->ARR11(3) -->ARR14(2)                             --------->ANAC58                  --------->ANAC58 ---ARR14(3)                         ------>MYB46(1)                       --------->ANAC58 ---ARR11(3)                         ------>MYB83                        ---------->DOF2 -->ARR14(3)                  ---------->DOF2          <-------TEIL     <---------MYB52(1) -->ARR10         <---------TOE2(3)  -------->P ----------->GT1     ------>NtERF2<---------ARR11(3)--   ttgaagaaacaaaagttgttaagaaatttttgaaaagcctaccaagaaagaagtatattcatatagttgcagcccttaagcaagttctagacctcaagaa  14683000  Previous    Next  AGI:  At3g42553.1    Description:  transposable element gene. copia-like retrotransposon family, has a 8.6e-22 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family) Range:  from: 14682465    to: 14686550    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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