Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  --------->ANAC46                                                --------->ANAC58                                                --------->ANAC58         <---------HSFB2a(2)                                         <---------YAB1                  --------------->AGL15                                       --------->YAB1                    <---------------AGL15                                     <---------YAB1                      --------->HSFB2a(2)    --------->YAB1                <---------AHL20(2)         --------->AHL20(1)   <---------ATHB12               --------->AHL20(2)         <---------AHL20(1)        <---------AHL20(2) ---AHL20(2)            <---------MYB52(1)  --------->CCA1(2)--------->AHL20(2)       <---------AHL20(2) -->AHL20(1)       --------->ANAC58--------->AHL20(2)        <---------AHL20(2)  <---------ARR11(3) ->AHL20(2)        --------->ANAC58<---------AHL20(2)       <---------ATHB12 ---------->DOF2--------- --AHL20(2)       ------->GAMYB   <---------AHL20(1)        --------->AHL20(2)   --------->ARR11(3) -AHL20(2)    <---------ATHB12 --------->AHL20(2) <---------ARR11(3)<----------DOF2   --------->AHL20(2)   ttgaaatcataaaccaataacacccccttagtataaattatttatgatacaagacattttcaataaatttcttttctataaaagataatttaaaatgtaa  14617700                                                                                      ------>ZmHOX2a(2)                                                                                     <------ZmHOX2a(2)                                                                                    --------->ARR14(2)                                                                                    <---------AGP1                                                                                    <---------ARR11(3)                                                      <-----------------AGL1        --------->ARR11(3)    --------->TOE2(3)                             <---------ICU4           <---------TOE2(3)  <---------ARR11(3)                      --------->WRKY12              <---------AHL20(2)  --------->ARR11(3)       <----------DOF2--------->WRKY38(1)<---------HSFB2a(2)    <---------ARR14(2) <---------GLK1(2)      <-----------GT1   --------->WRKY45   --------->HSFB2a(2)    --------->ARR14(3) -->GT1      ---------->DOF2           --------->TOE2(3)  <---------MYB52(1)        <---------ARR14(3)   acaaaatctcaaatggaaagagcatttaactttgagtcaaacctttgactaaaaatttctgttatggaaaccatattaatgtggaagatcttatacatat  14617800                                 <---------AHL20(2)                               <---------AHL20(2)                           <---------AHL20(2)                           --------->AHL20(2)                                   ----------->GT1                         --------->AHL20(2)                                    --------->DAG2                         <---------AHL20(2)                                  ---------->DOF2                       --------->AHL20(2)                            <---------AHL20(2)             <---------ANAC46  --------->AHL20(2)                    --------->AHL20(2)             <---------ANAC58--------->AHL20(2)                   <---------AHL20(2)             <---------ANAC58<---------AHL20(2)                  <---------AHL20(2) --------->WOX13(1)         <-------MYC3  <---------AHL20(2)                        --------->AHL20(2)>>>>>>>>>GT-1    <         ------->MYC3--------->AHL20(2)                    >>>>>>>>>MYB98<---------------AGL15      -   atatgcatacacatggcctacatatatatatatatatatatgcatagactgtgttcttagtaacatattaattttttaaaaaaggtaaatcaagtttgaa  14617900                --------->TOE2(3)              <---------ARR11(3)              --------->GLK1(2)              --------->ARR11(3)       <---------LBD16        <----------DOF2      <---------ANAC46       <------------------------ANAC81  <---------GLK1(2)        --------->ARR14(2)  <---------ARR11(3)       <---------ARR14(2)      ----------->GT1                             <-----  --------->ARR11(3)      <---------CCA1(2)        --------->AtLEC2                --------->ARR14(2) ---------TOE2(3)   <---------At4g35610      <----------DOF2          <---------TOE2(3)        <----- ---------->ARR10   --------->At4g35610   <-----------GT1  ----------->GT1         <---------ARR14(2)   ataagattttgtggaaaatcttagatgcctatcttttttttttttttcttttcatgtaaaacagtgaaaactaagtttatgagcaaattttcttgaactt  14618000                                                                                  <---------AHL20(2)       --------->HSFB2a(2)                      <-----------GT1                  --------->AHL20(2)     ----------->RAV1(2)                     <---------YAB1               <------------CBF     <---------At4g35610                    <---------AHL20(2)         <------ZmHOX2a(1)     --------->At4g35610 <------------CBF   <---------AHL20(1)        --------->LBD16 -----DOF2               <---------ICU4   <---------YAB1            <-----------RAV1(2) ----DAG2  ------------>CBF               <---------AHL20(2)        <---------LBD16   ttttgtcatctggagcaatatttctaatattgacttatttgaatattatttttctatacatttttgtttttcaggagattggattaaatcgagacgaaga  14618100                                        <---------ARR11(3)                                --------->ANAC58                                <----------ID1                                ----------->GT1                     --------->ANAC58   --------->ARR11(3)              --------->MYB52(2)    *TSS             --------->ANAC46  --------->CCA1(1)             --------->YAB1    <-----------------AGL1      --------->ANAC58                    <---------YAB1    <-----------GT1  --------->ANAC58  --------->RVE1(1)   --------->TOE2(3)         <----------DOF2   cttgttttaccatttggaaacacaggcaatggaaacgaaaaaaatctcatattttctattaccttcgttgatgatagttgctctcatctttcagcctatg  14618200              --------->ATHB12              <---------AHL20(2)             --------->ICU4             --------->AHL20(2)         <---------AHL20(1)                            ---------->DOF2   --------->ANAC46                                <----------ID1   <---------At4g35610                           ---------->DOF2   --------->ANAC55(2)                     ----------->GT1   ----------->GT1                        ----------->GT1                                          --  <---------TOE2(3)                       --------->ANAC58                                        ---  <---------TOE1(3)--------->At4g35610    --------->ANAC58      ----------->GT1              <------- <-----------RAV1(2)                      ------------------------>ANAC81                ------->TEIL   tgttcaggtaacatatttattagcttcaatatgcattgtctaaaacggaaaaaaagaaaaagaagaagattaaaactccatgtgaaaaatgaattttaca  14618300                                   <---------ANAC46           <---------ICU4         <---------TOE2(3)                    ----------->GT1          --------->ICU4     <---------MYB46(3)                        <---------ANAC46 ----->GAMYB          --------->DAG2                                 <---------ANAC46  <---------YAB1 ------>MYB46(3)     ---------->DOF2                              <-----------RAV1(1) --------->AHL20(2) ----GT1  <---------ATHB12 <---------MYB52(1)                <-----------GT1      ----------->GT1   accatctgtgaaatcatttcaagaaaagcgtttgtttacgtttaatagattaaaagattgaattcactatgttgtgtaaaattgttgttaaaattgtgaa  14618400                                                            --------->ANAC46                                                      <---------ARR14(2)                  <----------DOF2                     --------->ARR14(2)                     --------          <------ZmHOX2a(2)                           --------->GLK1(1)                  --------->AHL20(2)         <---------ARR11(3)                 --------->TOE2(3)      --------->TOE1(3) ----------->GT1         --------->ARR11(3)           <-----------GT1<------ZmHOX2a(1)        ----------->RAV1(1)   ccaaaatatgagatcatgggcttcaattgtctaaacgatttcacattcttaaacaggattccaccgaaaccttcagagtccaacaaattgataaaatgtg  14618500                       ------->GAMYB                 <-----------GT1               <---------AHL20(2)          <---------YAB1 <---------ALFIN1      ------>MYB46(1) --------->ANAC46                                                <---------MYB52(1)      ------>MYB83   -------->P                                                <---------------------    <---------MYB59 <-----------GT1                                           <-----------RAV1(1)  -------->P<---------AHL20(2)  <----------DOF2    <---------GLK1(2)        <----------DOF2  <------- --->GT1  <---------AHL20(2)<---------GLK1(2)<-----------GT1     <-----------GT1---------->ID1   aaactaccaaatattattttatcaaccccacattctttataagtttataactagattctacaatatttcactcatctactttgtcgcagtttgtttgctg  14618600  Previous    Next  AGI:  At3g42473.1    Description:  LCR47 (Low-molecular-weight cysteine-rich 47). Identical to Putative low-molecular-weight cysteine-rich protein LCR47 precursor (LCR47) [Arabidopsis Thaliana] (GB:P82762); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32619.1); contains domain PD694200 (PD694200) Range:  from: 14618104    to: 14618957    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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