Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                <------MYB46(1)                                                                              <------MYB83                                                                              <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                           <---------ANAC58                                                                           <---------ANAC58                                                                          --------->ATHB12               <<<<<<<<<<<<<<<<<LFY                      ------->TEIL  <---------ANAC58          ---------->DOF2   --------->ANAC58          <---------YAB1   <---------ANAC58 -------->ANAC58            --------->ANAC46   <---------ANAC58    <---------WOX13(1) -------->ANAC58            --------->ANAC58   <---------ANAC58   <---------GLK1(2) ------>MYB52(1) --------->ATHB12            --------->ARR11(3)  --------->ATHB12             xxxxxxx   aaacgacaatgccaaagaaacattggattcaagtcattagacttaaatttcttggtatgaatgttatagattggcatgcttggtttagaccatagagtcc  14624100                                                                               ------>MYB46(1)                                                                               ------>MYB83                                                                            <---------HSFB2a(1)                 --------->YAB1                ----------->RAV1(1)          --------->HSFB2a(1)                 --------->TOE2(3)    --------->YAB1                ----------->GT1          --------->ZAT18            <---------ATHB12              --------->DAG2          <---------ZAT18          --------->WOX13(1)             ---------->DOF2          --------->YAB1 xxxxxxxxx>smallRNA(i)         --------->At4g35610             ------>ZmHOX2a(2)          <---------ATHB12   attctctaatggagcgctaccataaaacatatcatctcaatcaaatgaacaacatttgttcttgatcgaaaagtgaaaaccttccatgtccaaacatgaa  14624200                                                                                           --------->ANAC58                                                                                           --------->ANAC58                                                                                --------->ARR14(2)                                                                --------->RAP2.6(3)        --------->ANAC46                                                            <---------AtLEC2    <---------ARR14(2) <-                         <------ZmHOX2a(1)    --------->At4g35610     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <---------ANAC58                   <---------At4g35610    ---------->DOF2     <---------ALFIN1           <---------ANAC58            <---------ARR14(2) --------->AtLEC2 --------->MYB52(1)      --   acagagatgattttcttgtttatagcaggaacatagtagcagttcttaagctccaaaaccatgcatgaaggcaaagacaacgaatatgttcccacggcca  14624300                                 <---------ZAT18                                 --------->ZAT18                            >>>>>>>>>NAP                          <---------TGA1a                          --------->TGA1a                          <---------O2                          --------->ANAC58                          --------->ANAC46                          --------->ANAC55(2)                                                     ---                          --------->ANAC55(1)                                                     ---                          --------->ANAC58                                                       ----                          <---------ANAC55(2)                 <---------MYB52(1)    --------->ANAC46                          --------->O2            ---------->DOF2                <---------ARR14(2)       <----------DOF2    ===================================bZIP_DOF        ------->TEIL      <-----       =============================bZIP_DOF   ------>ZmHOX2a(1)     --------->ANAC46          ------ --------ZAT14          <---------ALFIN1   ------>ZmHOX2a(1)<-----------RAV1(1)  --------->ARR14(2)-- ------->ZAT14   <---------MYB52(1)     ---------->ID1--------->ARR11(3)  --------->AtLEC2     ------   atgcagagacttttgctccattagccacacgtaagtccacttgtccttcctccaaagttctactgttgtttaggccatgcacatatacacaaatgtgagc  14624400                                                                               --------->ARR11(3)         --------->ARR14(2)                                                    <---------ARR11(3)        --------->GLK1(1)                                                     <---------GLK1(1)       <---------MYB52(1)                                                     --------->GLK1(1)  <---------ARR14(2)                                                      >>>>>>>>>TBF1  --------->ARR14(2)            <---------------AGL15                 --------->LBD16 -------------->AGL2            --------------->AGL15                --------->ANAC46 -------------->AGL1           =====================================================MADS_MADS ------->RAV1(1)               ----------------->AGL3               --------------->AGL15 ----At4g35610                 ----------------->AGL2               <---------------AGL15 --->At4g35610   --------->ANAC46                                --------->CCA1(2) ------->AtMYB61 --------->ANAC58                 <---------ANAC46--------->MYB52(1) --->ZAT18       --------->ANAC58      ----------->GT1           <---------GLK1(1)               <---   accaaaaccggtatccaatacccaaggagtagaaccagaagtagtaacatttacgtctataacatagatacccgaagaagaaatcttgaatgttttcttc  14624500        ------>ZmHOX2a(2)        ======================HOX2a_HOX2a       <------ZmHOX2a(2)       =======================HOX2a_HOX2a      <---------ARR11(3)      <---------ARR14(2)      --------->ARR11(3)      --------->ARR14(2)      --------->AGP1      <---------GLK1(2)      --------->ARR14(3)      <-----------ARR10                                                                             <      <---------AGP1<-----------RAV1(2)                                                            <-      <---------ARR14(3)                                                                           --     <---------CCA1(2)                                         <---------HSFB2a(2)          >>>>>>>>>MYB98   <---------HSFB2a(2)                                   <------ZmHOX2a(1)      <----------DOF2 -----   --------->HSFB2a(2) <------ZmHOX2a(1)         ------>ZmHOX2a(1)          <------ZmHOX2a(1)-------- -------DOF2        <---------LBD16      *TSS ---------->ID1   --------->HSFB2a(2)         <---------   tttttccagatcttccaagtattcaggagggtttgatgcattcaatttgtccttcttaaggacatctcgaactgaataggaactttgagggtttaacata  14624600                                                                                                  <--                                                                                                  <--  <---------ANAC46                                                                               ----  --------->ETT(1) <---------AHL20(2)                                                            <--- -----------HVH21  --------->AHL20(2)                                                       <-------- ----------RAV1(1)<---------AHL20(2)                                      --------->YAB1    --------- ----->GAMYB      --------->AHL20(2)                                     <---------YAB1     ------>ZmHOX2a(1) ---->MYB52(1) --------->AHL20(2)              --------->TOE2(3)    --------->ZAT6          ========= ->YAB1     --------->YAB1        --------->AHL20(2)      <---------TOE2(3)  --------->YAB1 ========= --GT1  ---------->DOF2       <-------TEIL  <---------GLK1(1)   <---------MYB52(2)      <-----------GT1   actgtcggaaaaaagcataaattaatatgatgttcataaattttagaattcttaacaattaagaaaactaacactataatcaaaacaaattttcctctaa  14624700                <------ZmHOX2a(2)          ------>ZmHOX2a(2)       --------->YAB1      <---------ATHB12                                                          --------->ANAC58  <---------ZAT14<-------TEIL                                                   --------->ANAC58   <- -------ICU4   --------->ARR14(2)                   <---------ALFIN1       --------->MYB59       <--- -------------AtSPL8                                <xxxxxxxxxxxxxxxxxxsmallRNA(si3)             ---- ----->ICU4    <---------ARR14(2)           <----------DOF2                <---------TOE2(3)     ---- ------ATHB12  --------->ARR11(3)         --------->At4g35610      ----------->GT1    --------->ARR11(3) -------AGL15  --------->AGP1             <---------At4g35610  <---------ARR14(2)     <---------ARR11(3) ------>AGL15  <---------ARR11(3)       <---------ZAT18        --------->ARR11(3)    --------->REM1(1) ================HOX2a_HOX2a    --------->GLK1(2)  --------->ATERF1(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ======================HOX2a_HOX2a      --------->ZAT18        <---------ARR11(3)  ----------->RAV1(1)   tgagtacaatgatccaagatccatatttcactagaatccaagtgagctttggctccacccttgaatatctagttatttaggtaagcaacatcttgctaat  14624800                                                ------->GAMYB                                              ------>MYB46(1)                     <---------ANAC46         -------->P                     <---------ANAC58         ------>MYB83                 <---------ANAC58   <---------AHL20(1)                     <---------YAB1        --------->AHL20(2)          --------->AHL20(1)                  <---------MYB52(1)        <---------AHL20(2)          <---------ARR11(3)               <------------MYB.PH3(1)    ------>ZmHOX2a(1)<---------ANAC58         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------CCA1(2) <---------ANAC58   <-----------ARR10              --------->ARR14(2) ------AHL20(2)  <-------GAMYB      --------->ARR11(3)             --------->MYB52(1)    --------->ANAC58 ----->AHL20(2) <---------MYB46(3) <---------CCA1(2)               <---------ARR14(2)    --------->ANAC58 ----->YAB1<---------YAB1----------->HVH21  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <---------ANAC55(2)   tatatcctatataattcttggttgtgtatgacatctaatatcttatccaaccctatgtctctaagcccataaccgttttgatagcttagtcaagtaaact  14624900                                                                        ------>NtERF2                                                                        --------->LBD16                  <---------ICU4                                       --------->ANAC58                 --------->ICU4                                        --------->ANAC58                 --------->MYB46(3)                                    --------->ANAC46               <-----------GT1                                        <---------LBD16     --------------->AGL15                              <---------MYB52(1)  --------->AtLEC2  <---------AHL20(2)                      <---------ATHB12          <---------ARR14(2) --------->AHL20(2)                  --------->YAB1    <-------GAMYB--------->ARR14(2)  <---------TOE2(3)   agatttatttcatatagtaaccattactatctgtctcactcttaatcaattgcagaccgttgttttggcaaacccgccatacaaaaatttaagttttaat  14625000  Previous    Next  AGI:  At3g42471.1    Description:  transposable element gene. copia-like retrotransposon family, has a 0. P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element) Range:  from: 14621365    to: 14624541    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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