Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       <----------TaMYB80                     --------->At4g35610                    <---------ARR11(3)      <---------ARR11(3)      <-----------ARR10                   <---------At4g35610      --------->ARR14(3)                  --------->At4g35610      <---------ARR14(3)               <---------At4g35610      --------->ARR11(3)    <---------MYB52(1) <---------REM1(1)        --------->ATHB12      --------->GLK1(2)    <---------DAG2--------->GLK1(2)           <---------ANAC55(2) ------DOF2         <-----------ARR10<---------HSFB2a(2)             --------->ANAC55(2)  <---------YAB1 --->ID1           <---------GLK1(2) --------->HSFB2a(2)     >>>>>>>>>>WRKY63          ------>ZmHOX2a(1)   tttcccaaaatcttgctcacagcatcttcccttatgttttcagaagctgatgtagagtccatttgactatcaagtgattgtatttgttcctgatcataca  14609900                                                                   --------->GLK1(1)                                                               --------->HSFC1(1)                                                --------->ANAC58   --------->ARR14(2)                                      <---------ANAC55(2)      --------->HSFB2a(2)                                      <---------ANAC46         <---------HSFB2a(2)                                   <---------MYB52(1)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)---                          --------->YAB1        --------->ANAC58   <---------GLK1(1)             <---   <---------AHL20(2)    <---------YAB1         --------->ANAC46--------->LBD16              <-------   --------->AHL20(2)<---------WOX13(1)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <---------At4g35610   aacatttaaaccaaaaaaaactaattgatcataatccattacttatacacaggccataacaagttccagaattctcaccatagtctcagcaaattgaggc  14610000                                                                                    --------------->AGL15                                 --------->ANAC58                                   <---------------AGL15                              --------->LBD16                                      <-----------------AGL3                             --------->ANAC58                                      <-----------------AGL2                             --------->ANAC46                          <---------ZAT14                             <---------ANAC55(2)                   --------------->AtSPL8     <------                             --------->ANAC58               <---------ANAC58       ----------------->AGL3                             --------->ANAC55(2)        <---------DAG2 --------->ZAT14    -----------      <---------ETT(2)      <---------LBD16            <---------At4g35610 <---------DAG2 --------->DAG2    --------->AGP1        --------->PCF2             <-----------GT1   <---------ZAT18  <---------AHL20(2) -------->HVH21          <-----------HVH21<----------DOF2   <---------ANAC58     <-----------GT1 --------HVH21        --------->ALFIN1<---------CCA1(2)--------->At4g35610 <----------DOF2<---------- --TOE2(3)        <---------YAB1 --------->ANAC58------>ZmHOX2a(1) --------------->AtSPL3---------->DOF2   ttcacaggtctaccatcagcatgagtgtgtcccgcaatccatacctttctcctagtcaccttacttgggtctgtacacttttttttctatataaagtaca  14610100                                                    <---------AHL20(2)                                                    --------->AHL20(2)                                                <---------AHL20(2)                                                --------->AHL20(2)                                              <---------AHL20(2)                                              --------->AHL20(2)                                            --------->AHL20(2)                                      -                                            <---------AHL20(2)                                      <                                          --------->AHL20(2)                                       --    --------->TOE2(3)                     <---------AHL20(2)                                       --  <---------ARR11(3)                    --------->AHL20(2)                                     ------  --------->ARR11(3)                    <---------AHL20(2)                                     ------ <---------CCA1(2)                    --------->AHL20(2)                                  ------->GAMYB -TEIL--------------->AtSPL8         <---------ARR11(3)                                  --------->MYB46(3) ---->AtSPL8                         --------->AHL20(1)                  <---------AHL20(2)    ------ -----AtSPL8                         <---------AHL20(1)          <---------YAB1         --------->At4g35610   tatatatcttagtaccaatttgttctaacaagaatacaatatatatatatatatataaattcaatttgtcattgtataattttcaaaatcaacagcctac  14610200                    --------->TOE2(3)                    ------->GAMYB                   --------->MYB46(3)                  ------>MYB46(1)                  -------->P                  ------>MYB83                 ------>MYB83                 ------>MYB46(1)                 --------->MYB52(1)      <---------ANAC58                            --------->ALFIN1 -------->ZAT2 <---------MYB59                --------->DAG2                             --------->ALFIN1 ---------ZAT2 --------->MYB46(3)            ---------->DOF2                            --------->ALFIN1 ---->MYB46(1)--------->ANAC58          --------->AHL20(2)                           <---------TOE2(3) ---->MYB83   --------->ANAC58       ----------->GT1                            --------->WOX13(1) -->P <---------ANAC58               --------->TOE2(3)   --------->ANAC58    --------->At5g28300 ---- >MYB46(1)  <------ZmHOX2a(1)        --------->TOE1(3)   ----------->GT1    ----------->GT1<---------ANAC46 >MYB83<----------DOF2              ----------->GT1      --------->ANAC58  --------->ZAT6<---------MYB46(3)   caagctgtgcttgaggacccaaccgtagtcgtggtgaaacgttaaaataaagttgtggcaagtaaaatagagtttgaacagtaaatcaaggttgtgggaa  14610300                 <---------------AtSPL8       ------>MYB83                  --------->ICU4       ------>MYB46(1)             --------->YAB1      ----------->RAV1(1)          <---------ICU4     ------->GAMYB                <---------ATHB12           <------------CBF    --------->MYB46(3)  <---------At4g35610             <------ZmHOX2a(1)  <-------TEIL  <-----------GT1<---------------AtSPL3  *TSS  ---------->DOF2       <---------REM1(2)            --- ----->ICU4      --------------->AtSPL8 <---------YAB1--------->ALFIN1     --------->ZAT14--------->YAB1   agattaaccaacattgaattttgtaccgctaactcagtcattactattcgaaagacgaggagctattggtctacaagtacaggcatggtgagtcataaac  14610400                                                                                                    -                                                                                                    -                                                                                                    <                                                                                             <xxxxxxx                                                                                            ---------                                                                                          <---------LBD16                                                                                       ---------->DOF2                                      --------->GLK1(2)                               <---------ARR14(2)                                     <---------GLK1(2)                                --------->ARR14(2)                                     --------->ARR11(3)                       --------->WRKY45      <                             --------->ANAC58<---------DAG2                   --------->WRKY38(1)   <      <------MYB83           --------->ANAC58<----------DOF2      ----------->HVH21  ================      <------MYB46(1)        <---------ANAC55(2)              <-----------RAV1(2)    <------ZmHOX2a(1)    <--------P     <----------DOF2   <---------ARR11(3)  ----------------->AGL1      ================ ------>ARR11(3)  <---------DAG2 ---------->DOF2       <-----------GT1 <---------------------WRI1   -   tatcttgttggtaatgtaaaccttttgagtcacgaaaaagattcttcctttttgtattttccgaacaggggacagagaagttgactaggaaacgcggatg  14610500  ------>ZmHOX2a(2)  ----------->GT1  ================HOX2a_HOX2a <------ZmHOX2a(2)                                                                  --------->ICU4 =================HOX2a_HOX2a                                          ------>ZmHOX2a(1) -------->ARR14(2)                                                   =================HOX2a_HOX2a -------->ARR14(3)                                                   ------>ZmHOX2a(2) ---------ARR14(3)                                                  ==================HOX2a_HOX2a   < xxxxxxxxxsmallRNA(i)                                               <------ZmHOX2a(2)          <----- >LBD16    <------ZmHOX2a(1)                                       <---------ARR14(2)          >>>>>> ---------ARR14(2)                        ------>ZmHOX2a(1)        --------->ARR14(2) <---------ANAC58 ---------ARR11(3)                        =================================HOX2a_HOX2a<---------ANAC58 ========HOX2a_HOX2a                  ------->GAMYB          --------->ATHB12  ------>ZmHOX2a(1)    - =======HOX2a_HOX2a      <-----------GT1  ==================================HOX2a_HOX2a        <----- -------->ARR11(3) <----------DOF2   --------->MYB46(3)  <---------ZAT18     ----------->RAV1(2)<----   aagatcgtgactaggacacatctttagtcactctcttcaacctcctaactcatacactgcgaactattggatcctatgctcctgcaatgcttgagacagt  14610600     --------->ANAC58     --------->ANAC46     --------->ANAC58                                                            <---------ANAC58 <xxxxxxxxxxxxxxxxsmallRNA(i)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       <---------ANAC58 ---------ZAT18                     ----------->HVH21             <---------ARR11(3) --GAMYB                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ARR11(3)  <---------ANAC58 >>>TAC1  --------->ANAC58   --------->ARR11(3)                   <---------GLK1(2)   <---------ANAC58 -------->ZAT18              <---------ARR11(3)          --------->ANAC58 <---------ANAC58 ----ZAT2 --------->ANAC58 <---------TOE2(3)             --------->ANAC58 <---------ANAC58 -----MYB52(1)             <---------TOE1(3)             --------->ANAC46---------->ID1   tgggcacaaggcaagtaattgtcaaattgaaggtatttgtgacccgacttgccttatacaagtaagtagatttttggcttcttacttgccttgtcaaaac  14610700                                                                 <---------ANAC58                                                                 <---------ANAC55(2)                                                                 --------->ANAC55(2)                                                                 <---------ANAC58                                                        ------>NtERF2                                                       --------->ANAC58                             <                                                       --------->ANAC46                             -                                                       --------->ANAC58                             <                  <---------ANAC58                    --------->MYB46(3)                       ------                  <---------ANAC58                 <-----------GT1          <---------AHL20(2) <-----              --------->ANAC58                    ----------->HVH21         --------->AHL20(2) ------              --------->ANAC58 <---------YAB1<---------ARR11(3)<-----------GT1               ------->TEIL   gagtacttgttttgacaagtacttgtctaaaatatgattacttacaagttatttgacccgccttgttacttgacaaaattaaatacttctacttgaacct  14610800  Previous    Next  AGI:  At3g42470.1    Description:  transposable element gene. CACTA-like transposase family (Tnp1/En/Spm), has a 2.0e-16 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element) Range:  from: 14605149    to: 14610341    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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