Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    --------->ANAC46               ------>ZmHOX2a(2)             <---------ARR11(3)                               --------->ANAC58      <---------ZAT18                                 <----------DOF2      --------->ZAT18                          <---------ARR11(3)                       xxxxxxxxxxxxx   --------->ANAC58                   <---------------AGL15   --------->ANAC58   <----------DOF2   --------->ANAC58   --------->ARR14(2)       --------->ARR11(3)         <------ZmHOX2a(1)         <   gactcaagcgaacttgatctacgatatactctcaaaactactaaactaagaacttacttttaagaagcaatagagaggagagactttagaatttagagtg  14367300                                                                                          <---------AtLEC2                                                                                      <---------GLK1(1)                                                                                      --------->GLK1(1)                                                                                      --------->CCA1(2)                                                                                     <---------ARR11(3)                                                                                     --------->ARR14(2)                                                                                     <---------ARR14(2)                                                                                    <------ZmHOX2a(1)                                                                            --------->KAN4(2)                                                                            --------->ARR14(2)                                                                            <---------ARR14(2)                        <---------YAB1                                     <----------TaMYB80                      --------->YAB1                                       <---------KAN4(1)                      <---------ICU4                                       --------->KAN4(1)                     --------->ICU4                                        --------->HSFB2a(1)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                        <---------HSFB2a(1)            <---------ANAC58                                              <---------ARR14(2)            <---------ANAC58                                              --------->ARR14(2)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          ---------->TaMYB80          --------->ARR11(3)                                              <---------KAN4(2) --------- xxxxxxxxxx>smallRNA(si3)               --------------->AGL15  --------->ARR11(3) <---------TOE1(2) ---------ANAC46     <---------ATHB51   <---------------AGL15 <------ZmHOX2a(1)  <---------LBD16   ttttgtgtttgagagcttgagaaataatgagaggctgggtctcttcatatagtagagggaaataggattttgggagaatattctcaggatatgcatgaca  14367400                           --------->AHL20(1)                  <---------ARR14(2)                  --------->ARR14(2)                  --------->GLK1(2)                                            --------->HSFB2a(2)---             --------->LBD16                          --------->GLK1(2)        <---------HSFB2a(2)---             ------>ZmHOX2a(1)                        --------->ARR14(2)  --------->KAN4(2)    ------            --------->TOE1(2)       --------->GLK1(2) <---------ARR14(2)--------->GLK1(2)      ------         <---------ARR14(2)--------->ARR11(3)--------->ARR11(3)--------->AHL20(1)          <xxxxxxxxx  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)       <---------AHL20(1)--------->ARR11(3)      <-------TEIL -->HVH21--------->ARR14(2)<---------AHL20(1)--------->AHL20(1)<---------AHL20(1)   xxxxxxxxxxxxxxxx>smallRNA(i)   tattttgagactatcctgagaatatgaaatattttgagaatatagaatattttgagaatatggaatattttgagaatatttccataagattcaactcagc  14367500                           <---------At4g35610          --------->LBD16     <---------ATHB12    <-----------RAV1(2)         ------>MYB83 ------>ANAC58        ------>NtERF2                  ------>MYB46(1) ------>ANAC58       <---------RAP2.6(2)    <---------ANAC58 --->At4g35610    ----------->HVH21         <---------ANAC58 --->ZAT2       <---------ICU4----------->GT1     --------->MYB46(3)                     --------->ZAT6 xxxxxxxsmallRNA(s) --------->RAP2.6(3)     <---------ANAC46     --------->AtLEC2   --------->YAB1   aagcccaataactcacaaatatgacggccagatggtgaacatgatgtcttgaaccatccgaagtttaatgcaaacttagacaacaagtataacacaactt  14367600                                                                    --------->ZAT18                                                                    <---------ZAT14                                                                    <---------ZAT18                                                                    --------->ZAT14                                                                --------->ATHB12                    -                                        <---------ANAC46       <---------YAB1                       <                <---------GLK1(2)     <---------ZAT18        --------->YAB1                         -            <---------TOE2(1)        <---------RAP2.6(2)     <---------ICU4                         -            <---------TOE1(1)      <-----------RAV1(1)      <---------ATHB12                        <    <---------HSFB2a(2)        <---------YAB1               --------->ICU4                   <-------    --------->HSFB2a(2) <---------MYB52(1)            ----------->GT1                     --------->ANAC55(2)   cattttctcgtagaacgaggttctctgtttgtgttcattgtggccttgaacatgtctggttaatcatgagtgaacttggagagtatagcctcacataatc  14367700            <---------ALFIN1           <------NtERF2         <---------TCP20                                 --------->DAG2         --------->PCF2                                 ---------->DOF2    --------->MYB52(1)                              <---------AHL20(2) <---------AHL20(2) ----->ZmHOX2a(1)<-----------GT1            <---------ANAC46     ------>ZmHOX2a(1)             <----- ---------HSFB2a(2)                         <---------ANAC58     ----------->GT1               <----- -------->HSFB2a(2)                     --------->At4g35610  <---------ARR14(2)  <---------ARR11(3) -------->HSFC1(1)          ----------->GT1 <---------ANAC58 --------->ARR14(2)  --------->ARR11(3) ---------HSFC1(1) --------->ZAT6       <---------At4g35610  --------->ARR11(3) <---------CCA1(2) <-- --GLK1(2)------>NtERF2    *TSS    <-----------GT1  --------->AHL20(2) <-----------GT1  ---------->DOF2   tcctagaaacggccccatttcacactcacaaggtgatttactagctgcttgtatttaaaaaagtatcctgtaattacttcacatatcttacaaagctagg  14367800      <---------YAB1     --------->TOE2(3)    --------->ATHB12    <---------ICU4                       --------->ANAC58    --------->YAB1                       --------->ANAC58   --------->ICU4                      <------ZmHOX2a(1)   <---------ATHB12      --------->TOE2(3)                   <------ZmHOX2a(1)             <---------ANAC58 -MYB46(1) --------->ANAC58        <-------TEIL            --------->MYB59     ------->GAMYB -MYB83  ---------->DOF2 --------->TOE1(3)        --------->ANAC46  <------ZmHOX2a(1)      <---------ANAC58 -----TEIL --------->ANAC58   <-----------------AGL1   <---------YAB1       ----------->RAV1(1) <----   ttcaaatcattaaaagcaaatgcttaacctttacacatacaggaagcactatacatcatgttaggaactaggaagagacaacagtctctcagtgcttata  14367900                                                           <------MYB83                                                           <------MYB46(1)                                                          <---------AtMYB61                                             ------>ZmHOX2a(2)                                            --------->GLK1(1)                                            <---------GLK1(1)                                            <------ZmHOX2a(2)                                    <---                                           --------->ARR11(3)                                 <------MYB83                                           <---------ARR11(3)    <-------GAMYB                <------MYB46(1)                               --------->TOE2(2)   <---------ATHB12                         <--------P                             ------->TEIL  --------->ARR14(2)  <------NtERF2              <---------MYB46(3)                        <----------DOF2    <---------ARR14(2)--------->ALFIN1            --------->ALFIN1 -------GT1         ---------->ID1 <-----------HVH21      --------->MYB111(1)     ------>ZmHOX2a(1)   acagatttagtttgatttagttgtccctttgaacctatgtcatgggatctccaatctttgtaggtggggttaccatcaaacttcctcttaggtggtaggc  14368000                                               <----------DOF2             --------->At4g35610                                  ------>ZmHOX2a(2)                        <---------At4g35610                                <---------ARR11(3)                 <------MYB46(1)                     ------>ZmHOX2a(2)        <---------DAG2       <------MYB83                   --------->ARR11(3)      <-----------GT1      <---------MYB52(1)           ==============================HOX2a_HOX2a        --------->ARR14(1)           =================HOX2a_HOX2a   <-----------GT1  <---------ARR14(2)   <---------ANAC58           ------>ZmHOX2a(1)    --------->ARR11(3)         <---------GLK1(2)    <---------ANAC58 -------DOF2       <---------ARR11(3)    <---------AHL20(2)--------->ARR14(2)------->GAMYB       <---   tttaaactcattcctcttgatgatcttgcaacttgatctcgatttaaaccttttgtaaatggattcgctaggttgtcaactgacttgatgtaatcgattg  14368100                                                  ----------->HVH21                                                --------->bZIP60(1)                  <----------DOF2                                                =========================================bZIP_DOF                                      <---------ANAC46                    <---------ZAT18           <                                      <---------ANAC58        <---------YAB1         <---------DAG2<-                                      <---------ANAC58       <---------At5g28300     <---------ANAC58                      <---------------------WRI1<---------bZIP60(1)     <---------------AtSPL8     <-        <---------At4g35610 ----------->GT1     <---------TGA1a   --------->AHL20(2) <---------ANAC58 ------YAB1 <---------TOE2(3)      <-----------RAV1(1)      <-----------GT1   <----------DOF2     ---   tgattactccagttgagataagttgtcgaatagttttatgtcgtgttctgatgtgactagatttaccattatatagggtactttgtgccttacctatagt  14368200  Previous    Next  AGI:  At3g42182.1    Description:  transposable element gene. copia-like retrotransposon family, has a 0. P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element) Range:  from: 14363771    to: 14367727    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g42186.1    Description:  transposable element gene. copia-like retrotransposon family, has a 1.1e-118 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum) Range:  from: 14367938    to: 14370508    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version