Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 --------->ZAT14                --------->ETT(1)                <---------ANAC46                          <---------ANAC55(2)               <------NtERF2   <---------ZAT18            <---------ANAC46           <------MYB83 --------->LBD16                   --------->ANAC55(2)           <------MYB46(1)     --------->WRKY38(1)        <---------ANAC58          <---------AtMYB61  --------->LBD16          <-----------HVH21         <---------MYB52(1) --------->DEAR3(1)      <------ZmHOX2a(2)        <-------GAMYB  --------->ANAC46            --------->ARR11(3)       <-----------RAV1(1)  <---------ANAC46       <---------ARR11(3)                --------->GLK1(1)       <---------MYB46(3)<---------ALFIN1          <---------ARR14(2)                <---------GLK1(1)  <---------ANAC55(2)  --------->ANAC58       <---------WRKY45                      --------->ARR14(2)  --------->ANAC55(2)  --------->ANAC58       <---------WRKY38(1)                   <---------ARR14(2)  <---------ANAC58    <---------LBD16         <---------WRKY12                     <------ZmHOX2a(1)  <---------ANAC58  <------ZmHOX2a(2)        --------->WRKY18(1)             ---------->DOF2  <---------ANAC55(1)------>ZmHOX2a(2)      <-----------HVH21         <---------HSFC1(2) <-------TEIL <-----------HVH21--------->WRKY12---------->DOF2        <---------HSFB2a(1) -------->CCA1(2)  <---------ARR14(2)  <---------PCF5------>ZmHOX2a(2)--------->HSFC1(2) ------->ARR11(1)  --------->ARR14(2) ----------->HVH21   <---------ANAC58 <---------------AGL15 ------->ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)=====================================HOX2a_HOX2a --------ARR14(2)<---------DEAR3(2) <---------LBD16--------->ARR14(2) --------->HSFB2a(1)         <--   agatacgtgctgttggtgtcggatcccgcaccgtggactcgggaccggtcaaagatcgtcgcgtaagagggaagggtctaaaagaggaaatgcccatggg  14246100                                                                                                   --                                                                                         <---------PCF2                                                                        <---------ARR14(2)        <--                                          --------->ZAT18               --------->ARR14(2) <---------                                         --------->ALFIN1             --------->LBD16  --------->ZAT18         ---------->DOF2               <---------ANAC46              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <----------DOF2                       <---------ZAT2                --------->LBD16  --------->ALFIN1 --------DOF2               <---------WOX13(1)                      <---------LBD16 <---------ANAC46   cttctttgagtaaaagtataacgcgagacgattgatcagcgaggtggactggacatcgatgtcaaaactgcccggattggagagtcgagtgggccagaag  14246200                                                                                               <-----                                                                                            ---------                                                                                          <---------ANAC46                                                                                     --------->ATHB51                                                                                     <---------ICU4             <---------LBD16                                                         <--------ATHB1           <---------ARR14(2)                                                        --------->YAB1        <------ZmHOX2a(1)                                                           --------->ICU4      --------->LBD16                                                               <---------YAB1     <-----------RAV1(2)                       <---------AHL20(2)                  xxxxxxxxxxxxxxxxxx     <---------LBD16                        ----------->GT1                       xxxxxxxxxxxxxxxxxxx -------->DOF2                     --------->HSFB2a(1)                    <---------AHL20(2)<-------- -------REM1(1)                    <---------HSFB2a(1)                   --------->AHL20(2) <-------- --RAV1(2)<---------GLK1(1)       <---------TOE1(2)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   atgaagcccaggaaattcggaatcaattcaaattcgaacgtttgaatagttaattcgaagactgaaacggacacatttaatatagaataattgtgcgtaa  14246300      <---------AHL20(2)     <---------AHL20(2)     --------->AHL20(2)                                  --------->ANAC55(2) ----ARR14(2)                                            --------->ANAC46 -------->AGL1                                --------->REM1(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxx>smallRNA(le3)                      --------->ARR11(3)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxx>smallRNA(le3)            <---------ANAC58          --------->ANAC58 -ANAC58            <---------ANAC46 ---------->DOF2     --------->ANAC58  <-----------GT1 -ANAC58        <----------DOF2<---------ANAC58          --------->ANAC55(1)   --------->ZAT14   atgggaattaaatgtattctttgagtataaattgtttgtcaaagaccatgtagaaacacacgcatttttgtgcaaacttactatacacattttcttacaa  14246400                                                                            <---------AHL20(2)                                                        --------->YAB1------>MYB46(1)                                                       <---------KAN4(1)    --------->AHL20(2)                                                       --------->KAN4(1)--------->AHL20(2)                                                      <---------KAN4(2) <---------AHL20(2)        <--                   --------->YAB1               ------>ZmHOX2a(1)     ------>MYB83                ---                   <---------ICU4            ---------->ID1  ------>ZmHOX2a(1)   *TSS          ------                  <---------YAB1      <---------AHL20(1)--------->KAN4(2)--------->AHL20(2)    <-----                --------->YAB1    --------->HSFB2a(2)--------->YAB1 --------------->AGL15      xxxxxx   aactcatagttttcgctataatcatcgatctattttctagtatatttgtcctcaagaataatccttctcaccaaataaataaatacttgagtatgtgaat  14246500                      <-----------RAV1(1)                  --------->DEAR3(1)                 <------NtERF2           <xxxxxxxxxxxxxxxxsmallRNA(s)                           --------->ANAC46     <-----------------AGL1                                     --------->ANAC46      xxxxxxxxxxxxxxx -------ETT(1)   --------->DEAR4(2)                 --------->ARR11(3)               ----------->RAV1(1) ------>ANAC46  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <-----------GT1           --------->At4g35610 --->ARR14(2)   ------>NtERF2       --------->GLK1(1)<---------RVE1(1)      --------->LBD16 ----ARR14(2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------GLK1(2)  <---------GLK1(1) xxxxxxxxxx>smallRNA(s)        ----------->GT1 <-----------HVH21--------->ZAT6--------->TGA1a   ccgacatccacattttggcaccgtctgtgggaacggagaattcttgagtcgtcagattttttctatacactacatttccgaagtgagcgacaatgtctgg  14246600                                                           <---------ARR14(2)                                                           --------->ARR14(2)                --------->ZAT14                           <------NtERF2           ------>MYB83 --------->RAP2.6(2)             <---------ANAC46           ------>MYB46(1)                             <---------LBD16         --------->AtMYB61                   --------->At4g35610        --------->MYB46(3)                   <---------At4g35610 <---------ANAC46           <xxxxxxxx xxxxxxxx>smallRNA(se3) --------->ANAC46 --------->AtLEC2--------->LBD16            ----------->GT1   agaagatgctaccaacgcttcactagccgaaactctcaagaccatgcagcaaactatggcggaaatggcgcataagtttttgaatgtagaaaaaaccgtc  14246700                <---------TOE1(2)                --------->LBD16                <---------TOE2(2)               <-----------RAV1(2)              ------->GAMYB            -------->P            --------->ANAC58            --------->ANAC58          --------->MYB46(3)        --------->ANAC46        --------->ANAC58        --------->ANAC58              <---------------AtSPL8                         <---------LBD16      xxxxxxxxxxxxxxxx>smallRNA(s)    --------------->AtSPL8               --------->ANAC58     --------->ZAT14          --------->YAB1                               --------->ANAC58       <-- xxxxxxxxsmallRNA(i)   --------->WOX13(1)                       --------->ATHB12    ------>ZmHOX2a(1)   gaaacactgcaaacaacccaggtatcactcagtcaaaatgttagtactattcaatctcgcattcgttcattgaatgcaggtaattcctctggagttcgaa  14246800                            <---------HSFB2a(2)                                      --------->LBD16              --------->LBD16--------->ANAC46                               --------->GLK1(1)          --------->ARR14(2)--------->LBD16                        XXXXXXXXXXXXXXXXXXXX>MIR2112-5P          <---------ARR14(2)--------->HSFB2a(2)               <------MYB83------>NtERF2        <---------DEAR3(2) <---------ANAC46                   ----------->GT1       --------->ANAC46  --------->ARR11(3)      <---------LBD16               <---------LBD16  --------->LBD16  <---------ARR11(3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <------MYB46(1)  <-------TEIL --------- -------ARR11(3)  --------->ARR14(2)               --------->MYB46(3)  <---------LBD16---------->DOF2   gaactatcttcggttccccaaattcccttccgcgaaatgcagcaagtgatcaaacgaccctggatggtacaaacgcggacatccatccgaaagatggaga  14246900                                                                                               xxxxxx                 -------->P                                                                ----------               --------->MYB46(3)                                                      <---------At4g35610            <----------ID1                                                             --------->At4g35610      --------->LBD16                     --------->ANAC58                          <------NtERF2     --------->HSFB2a(2)                  --------->ANAC58                         --------->LBD16     <---------HSFB2a(2)              --------->ANAC58                            <---------LBD16 -->GT1--------->LBD16                --------->ANAC58                           <---------LBD16-----   aacacatcccgaagacgacaaccagttcgttcatcaacacgagcaagaaaacttcaaccagttcgaaaccatgagagaagtaagccgggaactgaaagaa  14247000  Previous    Next  AGI:  At3g42052.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 4.0e-162 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor) Range:  from: 14246481    to: 14253624    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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