Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                <---------MYB52(1)                                            --------->ANAC55(2)             <---------ANAC46                                            <---------ANAC55(2)             <---------ANAC58                                <----------DOF2                    --------->DAG2 --------->GT1                  <---------DAG2                   ---------->DOF2       <----------DOF2 ->DOF2                      <---------ALFIN1           ---------->DOF2     <---------ANAC58 --WRI1 <-----------GT1<-----------HVH21    --------->ANAC46   <------ZmHOX2a(1)       --------->TOE2(3)   agagataatatcactctacaaatactgtcatccactttttggtatcacgtagtttcgacaaagcaggaaaaggttgtttcgttttttttctttaatccag  14095900                                                                                --------->KAN4(2)                                                                           <---------TOE2(2)                          <---------TOE1(3)                                <---------TOE1(2)                          <---------TOE2(3)                             ------>ZmHOX2a(2)    <-------                         <-----------RAV1(2)                           <---------YAB1        <-------           <---------ANAC58                                           --------->ARR11(3)     --------           <---------ANAC58                                          --------->YAB1        <---------ZAT18           <---------ANAC46    ---------->DOF2       <---------REM1(1)<---------ARR11(3)  <---------ANAC58    <------ZmHOX2a(1)  <-----------HVH21          <-----------RAV1(1)-------->HAHB4       <---------ANAC58  <---------TOE2(3)   <----------DOF2   --------->ZAT6              <---------ATHB12<---------YAB1   tttttaggaatttgtgtgtgttaactttcaggtaaaagatgaagactagcctatgttgtagagtcttctaatgatccttggttattctcattgcgagctc  14096000                                                    <----------DOF2                                                <---------ARR14(2)                                     --------->ANAC58                                     --------->ANAC55(2)                                 <----------DOF2--------->ARR14(2)    --------->TOE2(3)   <---------YAB1         <------ZmHOX2a(1) --At4g35610            <---------AtMYB61    <---------TOE2(3)            <------------CBF  --------- --ZAT2           <---------ARR11(3) --------->ANAC46         <-------GAMYB        --------->ZAT14 ->At4g35610      --------->ARR11(3) --------->ANAC58        <-----------RAV1(1)   <---------ZAT14   attaatccttgaatgttcaagatgttatggtcgagcttcaagtaacttaggatacttttggttctgttgaagtagggattgtcagtactctgtttgataa  14096100                                                   <---------DAG2                                           <---------SPL7                                         <---------------AtSPL8                                        <-------GAMYB                                       --------->MYB55(2)   --------->ATHB12                                       <---------MYB46(3)  --------->ICU4                                   --------->MYB111(1)     <---------YAB1                                   <---------AtMYB61      <---------TOE2(3)                                  <--------P     ------>MYB46(1)                                <---------REM1(1)------>MYB83                            <---------TOE1(3)  --------->MYB46(3)                            <---------TOE2(3)------->TEIL--------->YAB1                 <---------At4g35610<------MYB46(1)<----------DOF2                 --------->At4g35610<------MYB83<---------ALFIN1           --------->ICU4 ---------->DOF2--------------->AtSPL8   <---------GLK1(2)             <---- >YAB1  <---------YAB1 <----------DOF2--------->ALFIN1--------->YAB1                   ---------->DOF2   tccaaaacttgtaatagttagcaggctttaaaggttgtaggtggttgtacccacttttataatgtttggaatctctctgtttctaaacaaaaagaacact  14096200           --------->AHL20(2)       --------->AHL20(2)                                        <---------DAG2       <---------AHL20(2)                                    ------->GAMYB       --------->AHL20(1)                  <-------TEIL     <---------MYB52(2)                 <-----      --------->AHL20(2)    ------>ZmHOX2a(1)              <---------At4g35610           <----------- ------DOF2<---------AHL20(2)           <---------MYB46(3) --------->At4g35610        ------------>CBF   ttgtgaaaaaaaattaaaaatagaatggtcctctgtacatgctggttcatgtatagatttcaactcacctttggaagtttacaaatgagacaattgaaat  14096300                                                            ------>MYB46(1)                                                            ------>MYB83                                                            -------->P                                                           --------->MYB52(1)                      --                                                           --------->MYB55(1)                      --                                                          --------->DEAR3(1)                       --                                                          --------->MYB46(3)                    -----                                 ------------>CBF         --------->AtMYB61                 =========                           --------->At4g35610   --------->ANAC46   --------->TOE2(2)       =========                           <---------At4g35610   --------->ANAC58   --------->TOE1(2)       ------>ZmHOX2a(1)                        ---------->DOF2          --------->ANAC58   <---------LBD16     --------->ARR14(2)                   ----------->GT1        <---------ZAT2  <---------MYB111(2)           <-----------HVH21                   <------MYB46(1)        <---------At4g35610      ----------->RAV1(2)--------->LBD16 <<<<<<<<<<GATA-1  <------MYB83 ----------->RAV1(1)       <---------MYB46(2)         <---------LBD16< -------CBF       --------->MYB111(2)     <------NtERF2   <---------MYB55(2) <-----------GT1========= -CBF             --------->MYB111(1)     --------->At4g35610--------->MYB46(3)      --------->LBD16-   tgaaatcgagagaaattaagttggtagaaagctgcaacaatggcagcatcgaagccatcaccaaccgatacctgggattctactctccccggtcctccca  14096400                       ------>ZmHOX2a(2)                      <------ZmHOX2a(2)                     <---------ARR14(2)                 ------>NtERF2                 --------->LBD16               --------->ATERF1(1)               ------>ZmHOX2a(2)              <---------ATERF1(1)             <---------ARR14(2)         <---------LBD16                                                      --------->ARR14(2) --------->GT1<------ZmHOX2a(2)                                            <------NtERF2 ------->ANAC46--------->MYB46(3)                                        <---------ANAC46 ------->RAP2.6(2)   --------->ARR14(2)                                  <---------ETT(2) ---->ANAC46 --------->ARR14(2)                                        <-----------HVH21 =====================HOX2a_HOX2a                                     <-----------RAV1(1)     <------ ====================HOX2a_HOX2a    <---------MYB52(1)       <---------ALFIN1 <---------GLK1(2) ---------RAP2.6(3)  <-----------ARR10                     <---------ATERF1(1)<---------ARR14(2)    - ============================HOX2a_HOX2a       <----------DOF2------>ZmHOX2a(1)               ------- -------->At5g28300--------->DEAR3(1)         <---------DAG2--------->ATERF1(1)               <------   gccgtaacaacttcggatccgccgatctcagtccctccggtctcttcgcctttgcctctggctcctccgtctctgtcgtcgattctcgttctctccagct  14096500                                ----------------------->TaNAC69(2)                               <---------ZAT18              <---------MYB52(1)                     <-                               --------->ABI4(2)           <-------GAMYB                           <-                               --------->ZAT14            --------->MYB52(2)                 --------                               <---------ZAT14            <---------MYB46(3)           <------ZmHOX2a(2)                            --------->LBD16              --------->SPL7               <---------ARR11(3)                           --------->LBD16              <---------MYB52(1)         ------>NtERF2   <-                          <---------LBD16              <-----------HVH21           --------->LBD16 --   --------->ZAT6       ------>ZmHOX2a(1)              <---------SPL7------>ZmHOX2a(1)--------->ARR14(2) ---ZAT2               <---------ALFIN1               <---------ANAC58            --------->ANAC46 -- -------->ARR14(2)   ------>ZmHOX2a(1)                <---------ANAC58           <---------LBD16<---- -->ZAT2            <---------ALFIN1          <-----------TGA1       =========================HOX2a_HOX2a ---At4g35610    <---------ALFIN1             <-----------HVH21  <---------GLK1(1)--------->LBD16 ---   cgtttccactatccctctccctcctcctcccggtgctctctctcccttcgtcacttccgtccgttggattcctctccctctcccccgcgatctactctcc  14096600         --------->LBD16        --------->DEAR3(1)        <---------ALFIN1        --------->ANAC46                           <-----------HVH21      <---------ATERF1(1)                         --------->ALFIN1   <---------HSFB2a(1)                          <---------ANAC58   <---------HSFC1(2)                           <---------ANAC58   --------->HSFC1(2)                          <---------DEAR3(1)   --------->HSFB2a(1)                       --------->DEAR3(1)  --------->ARR14(2)                        --------->MYB46(3)  ------->TEIL                              --------->ANAC58 ------>MYB46(1)                            --------->ANAC58 ------>MYB83                          ------>ZmHOX2a(2) --------MYB46(2)                     <------ZmHOX2a(2) --------MYB55(2)                    <---------ARR14(2) ->ANAC46------>NtERF2        <-------GAMYB------>NtERF2                                     <------- --------MYB52(2)         --------->ANAC46--------->DEAR3(1)                                 <------- ------->DEAR3(1)        =====================HOX2a_HOX2a            --------------------->WRI1 ------->MYB46(3)        ------>ZmHOX2a(1)<---------ALFIN1    --------->WRKY12         <---------SPL7 -----ALFIN1             ====================HOX2a_HOX2a      --------->WRKY38(1)    <------NtERF2 <- ------>ANAC46    <---------DAG2     --------->ARR14(2)       --------->WRKY45     <---------DEAR3(1)   accgaaccctccgcctctcaccttctcctcgccgttgcagatcgccacggccgtgtcgctctcgttgacttccatcttcgctccgtcgtcgtctggctta  14096700                                                                                            XXXXXXXXX                                                                                     <---------ARR14(2)                                                                                     --------->ARR14(2)                                               --------->ZAT2                        <---------ARR11(3)                   --------->ANAC58            <---------ZAT2                        <---------AGP1                   --------->ANAC58        <-------TEIL                              <-----------ARR10                <---------ZAT2          <---------ANAC58                             --------->ARR11(3)                --------->ZAT2          <---------ANAC58                            <---------CCA1(2)               --------->ANAC58         <------MYB83                              <---------HSFB2a(2)          <------ZmHOX2a(2)            <---------MYB46(3)                         --------->HSFB2a(2)     ------>ZmHOX2a(1) --------->GLK1(1)<------MYB46(1)  <---------GLK1(2)       <---------LBD16 ------>ZmHOX2a(1)<---------LBD16  <-----------RAV1(1)   --------->ARR14(2)   <---------GLK1(1) ================HOX2a_HOX2a       <---------MYB46(3) ------>NtERF2           <----------DOF2 --ANAC58--------->ARR14(2)   --------->ARR11(3)  --------->ANAC46        ------>NtERF2------>ZmHOX2a(2) --ANAC58<---------ARR14(2)   <---------ARR11(3)  --------->ANAC58   =========================HOX2a_HOX2a --------ICU4  --------->ANAC58  <----------DOF2  --------->ANAC58   ------>ZmHOX2a(1)<---------GLK1(1)   atccttcctccgatcccaagctcggaattcaagacctttgttgggttcaagctcgccacgattctcatgtcctcgctgcgatttctggatcttcgtttct  14096800  Previous    Next  AGI:  At3g33530.1    Description:  transducin family protein / WD-40 repeat family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G26610.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ76915.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ63871.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65690.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943) Range:  from: 14096340    to: 14104656    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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