Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                   --                                                                                                   <-          <----------DOF2                                                  <---------------AGL15  --- -------->ZAT14                ----------->HVH21                         --------->At4g35610    ----- -------->ZAT18                ----------->TGA1                     <------ZmHOX2a(1)       <-------- ---------REM1(2)         <-----------RAV1(2)       <XXXXXXXXXXXXXXXXXXXXMIR837-5P          --------- ---------ZAT14   <------ZmHOX2a(1)        <-------TEIL           <---------TOE2(3)         ---------   actacactgagtctttgagaggattgaatcaggctgacgactagcttcatagagatgaacaagagattgaggatgagctatatagagagaagagaatccg  14106100                                  --------->ANAC58                              --------->WRKY12                              --------->WRKY38(1)                            <-------GAMYB                           --------->MYB52(2)                           <---------MYB46(3)                          <-------TEIL                       <---------DEAR3(2)                       --------->MYB55(2)                       <---------MYB46(3) ---------HSFB2a(1)   --------->ALFIN1 ------->ARR11(3)    <-------GAMYB--------->ANAC58 --------ARR11(3)    <---------MYB52(1)                                          <------ZmHOX2a(1) ------>GLK1(1)     <---------DEAR3(2)                                        <------ZmHOX2a(1) ---->LBD16         <---------MYB46(3)                                     <------ZmHOX2a(1)      <-- -ARR14(2)         <---------At1g77200                           <------ZmHOX2a(1)         <---------ANAC46 >GLK1(2)          <---------DEAR3(1)                     <---------DEAR3(1)--------->ALFIN1 -------- >ARR14(2)         <---------DREB2C(2)            --------->ALFIN1  <------ZmHOX2a(1)<------ZmHOX2a(1)   aaatcttcgaagacgagttcgtcggtggttcgttgaacggaagggattgagagtggtgcttcggtgaggaggagagaggaggaggaaggagctatgtgga  14106200                                                                                    --------->ALFIN1                                                                                    <---------DEAR3(1)                                                                                    <---------ANAC46                                                                                   --------->ATERF1(1)                                                                                   <---------At4g35610                                                                                   --------->At4g35610                                                                                   <---------ABI4(1)                                                                                   <------NtERF2                                                                                   <---------LBD16                                                                                  <---------RAP2.6(1)                                                                                  <---------ORA47(2)                                                                                  ------>NtERF2                                                                                  <---------ATERF1(1)                                                                                  <---------RRTF1(1)                                                                                  <---------RAP2.3(1)                                                                                  <---------ERF1                                                                                  <---------DEAR4(2)                                                                                 <---------DEAR3(1)                                                                                 --------->DEAR3(1)                                                                                 <---------ATERF1(2)                                                                                 <---------RAP2.6(2)                                                                                 <---------RRTF1(3)                                                                                 <---------RRTF1(2)                                                                                 <---------DREB2C(2)                                                                                 <---------RAP2.3(2)                                                                                 <---------RAP2.3(3)                                                                                --------->ATERF1(1)                                                                               <---------ATERF1(1)                                                                               <---------RAP2.3(1)                                                                              <---------DEAR3(1)                                                                             --------->SPL7                                                                           <---------SPL7                                                                          <---------ANAC58                                                                          <---------ANAC46                                                                          <---------ANAC58                                                                         <------NtERF2                                                                         --------->ATERF1(1)                                                                        <---------RAP2.3(1)                                                                        <------------------SPL14                                                                        <---------DEAR4(2)                                                                        ------>NtERF2  <---------DEAR3(1)                                                                        <---------ORA47(2)                                       <---------DEAR3(1)               <---------ATERF1(1)                                    <------MYB83                        <---------ERF1<------NtERF2                                    <------MYB46(1)                    <---------RAP2.3(2)                           <---------ANAC46                            <---------RAP2.3(3)                        --------->GLK1(1)                              <---------RAP2.6(2)                       <---------ARR14(2)                              ------------------>SPL14                       <---------GLK1(2)                               <---------DEAR3(1)   <--------    ----------->GT1    --------->ARR14(2)<------NtERF2                <---------ABI4(1)<---------AtMYB61 ----ZmHOX2a(1) ----------->HVH21 <--------P         <--------P --------->ATHB12<---------ABI4(1) ->ALFIN1     --------->ALFIN1  <---------REM1(1) <---------TOE2(3)   <---------ORA47(1)  --------->ALFIN1   ggagggaagtgaataggtgtgaccagatttcgcgttgtaggtcggagtttatgaggtagccacggtcgattgggcggcgtacggcggcggaggtgaggtc  14106300                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                  ---                                                                                                  ---                                <---------MYB46(3)                                                ---                             <---------ANAC46                                                 -------                            --------->MYB55(2)                                        <---------ANAC46                            <---------MYB46(3)                                      <---------MYB46(3)                 <---------ANAC46                                                   --------->MYB55(2)               <---------MYB46(3)                                                  <---------DEAR3(1)       <------NtERF2       <---------ANAC46 <---------HSFB2a(2)                    --------->ALFIN1<-     <---------DEAR3(1) ----------->HVH21   --------->HSFB2a(2)                    <---------AtMYB61-  <---------ANAC58   --------->ALFIN1   <---------AHL20(2)                     <---------At5g28300<--  <---------ANAC58<---------MYB46(3)  ------->TEIL                       --------->HSFB2a(2)  ------- -AtMYB61     --------->ALFIN1 --------->ALFIN1                         <---------LBD16    <------ZmHOX2a(2)   gatttcgtcggagagagtggtgagtggtgatgggtggatgaattttttggaagagagaggtttgtagagacagttcgggattacggtggtgggatcacgc  14106400                                                                                        --------->SPL7                                                                                       --------->MYB52(1)                                                                                      <---------SPL7                                                                                    <------NtERF2                                                                                    --------->ATERF1(1)                                                                                   <---------ATERF1(1)                                                                                   ------>NtERF2                                                                                   --------->LBD16                                                                                  --------->DEAR3(1)                                                                                  <---------DEAR3(1)                                                                                  <---------ATERF1(2)                                                                                  --------->ATERF1(2)                                                                                  --------->RAP2.3(2)                                                                                 --------->ATERF1(1)                                                                                 <------NtERF2                                                                                 --------->DEAR4(2)                                                                                 --------->ERF1                                                                                 <---------LBD16                                                                                 --------->ORA47(2)                                                                                 --------->RAP2.3(1)                                                                                 --------->RAP2.6(1)                                                                                <---------RAP2.3(1)                                                                                --------->ABI4(1)                                                                                ------>NtERF2                                                                                <---------ATERF1(1)                                                                               <---------DEAR3(1)                                                                               <---------ATERF1(2)                                                                               --------->ATERF1(2)                                                                               --------->RRTF1(3)                                                                               --------->RRTF1(2)                                                                               --------->RAP2.3(3)                                                                               --------->RAP2.3(2)                                                                               --------->DEAR3(1)                                                                              --------->RRTF1(1)                                                                              --------->RAP2.6(1)                                                                              --------->ATERF1(1)                                                                              <------NtERF2                                                                              --------->DEAR4(2)                                                                              --------->ORA47(2)                                                                              --------->RAP2.3(1)                                                                             <---------At4g35610                                                                             ------>NtERF2         <---------LBD16                                                     <---------ATERF1(1)       <---------WRKY18(1)                                                   <---------DEAR4(2)   <------NtERF2                                                             <---------DREB2C(1)  ------>NtERF2                       <---------HSFC1(1)                     --------->At4g35610 --------->RAP2.3(3)                  --------->HSFB2a(2)                    <---------RAP2.3(1) --------->DEAR3(1)                   --------->HSFC1(1)                     --------->ABI4(1) --------->RAP2.6(2)                  <---------HSFB2a(2)                   <---------DEAR3(1) --------->RAP2.3(2)              --------->WRKY38(1)                       --------->RAP2.3(3) -------->ATERF1(1)         --------->DEAR3(1)                              --------->ANAC46 -------->DEAR4(2)          --------->DREB2C(2)                             --------->ATERF1(2) -------->ERF1              ------->GAMYB                                   --------->DEAR3(1) -------->ORA47(2)          <---------ALFIN1                                <---------ATERF1(2) ------>ANAC46           --------->AtMYB61                                  --------->RAP2.3(2) ------>ANAC58   --------->ATHB12<---------MYB52(1)                        --------->DEAR4(2) ------>ANAC58<----------DOF2--------->ABI4(1)                             --------->ATERF1(1) -->ANAC58 --------->LBD16 --------->MYB46(3)                              --------->ERF1 --------ATERF1(1)       <---------ALFIN1<<<<<<<ZML2          ----------->TGA1--------->ERF1 -------->RAP2.3(1)     --------->MYB46(3)                  --------->YAB1 --------->RAP2.3(1) -------DEAR3(1)<---------YAB1  <-------GAMYB        ----------->HVH21    <---------ATERF1(1) -->ANAC58<---------RAP2.6(2)------>NtERF2       <---------YAB1          --------->ANAC46   tcgccgccttgtccggctttgattagaccaccgccgttgtctagaacaacgatgtttgacattgatgacgatgactcgccgccgccggcgaacgaactct  14106500                                     ------>ZmHOX2a(2)                                   --------->ARR11(3)                                   --------->ARR14(2)                                   <---------ARR11(3)                                   <---------ARR14(2)                 <---------AHL20(2)<-----------ARR10                 --------->AHL20(2)*TSS                                     <------------CBF      ---            ---------->ID1        <------ZmHOX2a(1)                ---------->DOF2         --------->ZAT14          <-----------RAV1(1)   <---------TOE2(3)               <---------TOE2(3)   <-----------GT1   ----------->GT1      ------->TEIL<------ZmHOX2a(2)  <---------ZAT18    <---------ZAT14  <---------ZAT14   gtaagtggttttttgttgtttaaatgaatcggtttaggatctactggtttaagctagtgcgattttaagaaaagactgtattggaattaccagtttagag  14106600                                                                   --------->ANAC46                                                              <---------MYB52(1)                                                             <-------GAMYB                                                             --------->LBD16                 --------                                                            <---------ANAC46              <---------MYB52(1)                                                            ----------->GT1              --------->LBD16                                                       <---------MYB46(3)               <---------LBD16                                                      <--------P   --------->ANAC58     <------NtERF2                                                     <---------MYB52(1)   ---------->DOF2<------NtERF2       --------->MYB52(1)                            <-------GAMYB --------->ANAC58    <---------LBD16 ------>GLK1(1)----------->GT1                  <-----------HVH21<-----------GT1     <---------PCF2   atttcaaactgagggaagagtgaatttgaattagggaaattactaaaaccggtccggttgttccgttaaacgctacaaaagttagtaggcccgggagttc  14106700                     ----------->GT1                   ------>ZmHOX2a(2)                  <------ZmHOX2a(2)                  ==========================HOX2a_HOX2a                 --------->ARR14(2)                 <---------ARR14(2)               <---------DEAR3(2)              --------->ETT(1)           <---------MYB46(3)           <------MYB46(1)           <------MYB83          <---------AtMYB61                                                                   -------          --------->MYB111(2)        <------ZmHOX2a(1)                                        xxxxxxx          <---------MYB46(3)        ----------->GT1                                   --------->MYB59          --------->MYB55(2)       <---------TOE1(3)                             <---------YAB1<-----          --------->MYB59--------->KAN4(2)                                      <---------AHL20(2)         <--------P=========================HOX2a_HOX2a                         --------->AHL20(2)        <---------MYB52(1)         <---------TOE2(3)                           --------->AHL20(2)  <- ->GLK1(1)--------->MYB111(1)  <----------DOF2               <-----------GT1   --------->YAB1 <------   gactaaatcgggttggtcggatcgggttattcggtttaaggaaaattcagggttttgaaaatttcactgaatagactcgaattaaaattcggttcggatc  14106800           <---------MYB52(1)          <-------GAMYB         <------MYB83         <---------DEAR3(2)         ----------->GT1         <---------MYB46(3)         <------MYB46(1)     <---------MYB46(3)   <---------MYB52(1)  <------MYB46(1)  <------MYB83 --------->MYB46(2)      <---------MYB52(1) --------->MYB59       ----------->GT1                                                 <---------RVE1(1) -->ARR14(2)          ------>ZmHOX2a(2)                                               --------->ARR11(3) xxxxxxxxxxxxxxx>smallRNA(i2)  --------->At4g35610                                    <---------GLK1(2) -ZmHOX2a(2)         <------ZmHOX2a(2)                                    <---------ANAC58 --------MYB52(1)   <---------ARR14(2)                                    <---------ANAC58 <--------- ---ARR14(2)        --------->ARR14(2) <---------AHL20(2)              <<<<<<<<<<GT-3b<---------ARR11(3)   agttcggtagtcggttaattcggatcggttattagctaaaatttatgttctgaacatgaactggattttgtatttttcttggtttatagattttttcatt  14106900                                                                                                    <                                                                                                    <                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                              -------                                                                                          --------->YAB1                                                                                          <---------ICU4                                                                                         --------->ICU4                                                                                        --------->AHL20(2)                                                                                        <---------AHL20(2)                                                                                        <---------AHL20(1)                                                                                      <---------YAB1<                                                                                     --------->AHL20(1)                                                                                     --------->AHL20(2)                                                                                   <---------AHL20(1)                                                                                  --------->YAB1    <                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxxxxxx                                                 --------------->AGL15       ------>MYB83<---------YAB1                                                 <---------------AGL15       ------>MYB46(1)  <------                                                ----------------->AGL2     --------->TOE1(2)  -------                                                <-----------------AGL2  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            <---------YAB1                      ----------------->AG --------->YAB1--------->AHL20(1)     --------->ANAC55(2)               ----------->GT1         <-----------GT1  <xxxxxxxxxxxxxxxxxxxx --GT1    <-----------GT1          --------->GLK1(2)   ----------->GT1  <-----------GT1--------->YAB1   ttggtttacatattacaattactctattacaaacacaaatctagtaaaatactaaaatgggaaatttacatttataacctacaaaaatattataattagg  14107000  Previous    Next  AGI:  At3g33520.1    Description:  ATARP6; structural constituent of cytoskeleton. similar to actin, putative [Arabidopsis thaliana] (TAIR:AT2G42100.1); similar to actin-related protein 6 [Olimarabidopsis pumila] (GB:ABA18089.1); similar to actin-related protein 6 [Arabidopsis arenosa] (GB:ABA18108.1); similar to actin-related protein 6 [Capsella rubella] (GB:ABA18103.1); contains InterPro domain Actin/actin-like; (InterPro:IPR004000) Range:  from: 14104642    to: 14106535    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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