Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                  <--                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                         --------->ZAT2          ----                                       ------>ZmHOX2a(1)                 <---------At4g35610     ----                    ------>NtERF2      ===================HOX2a_HOX2a    <---------ZAT2          <---                   --------->LBD16 --------->ARR11(3)                    --------->At4g35610     <---                  <---------ANAC58 --------->ARR14(2)         --------->AHL20(2)                ----- ---->TEIL        <---------ANAC58 <---------ARR14(2)       <----------DOF2                    ------ ->GAMYB          <---------ANAC46 <---------ARR11(3) --------->ANAC46 <-----------RAV1(2)   -------- ->At4g35610     <---------LBD16--------->YAB1     ------>ZmHOX2a(2) <-----------HVH21    -----------   aacctcactaaaaccatgatgcgggcaatctcactaatatcctctaaatctgatccaagcggctttaaatgcttcagctgcttcttgagagaaggtaaag  13955700                     ------>ZmHOX2a(2)                    <------ZmHOX2a(2)                   --------->ARR14(2)          <---------At4g35610 ---->ZmHOX2a(2)   <---------ARR14(2) ----ZmHOX2a(2)    <---------AGP1<---------YAB1                                     xxxxxxxxxxxxxxxx>smallRNA(i) ----->ARR14(2)    --------->ARR11(3)                                              <------ZmHOX2a(2) ------ARR14(3)    <---------ARR11(3)                                              ================== ----->ARR14(3)   <---------ARR14(1)                                               --------->CCA1(2) ----->ARR11(3)   <---------CCA1(2)                                               --------->AGP1 ----->AGP1<---------GLK1(2)--------->YAB1                       <----------DOF2  <---------ARR14(2) ------ARR11(3)--------->HSFB2a(2)      <---------MYB46(3)    <-----------GT1     <---------ARR11(3) ------ARR14(2)<---------LBD16 --------->YAB1              --------->AHL20(2)     --------->ARR11(3) ---->RVE1(1)  <---------HSFB2a(2) ---------->DOF2         <---------AHL20(2)     --------->ARR14(2) ----->ARR10<----------DOF2 <---------ICU4           ----------->RAV1(1)   <-----------HVH21--------- -->DOF2  --------->At4g35610 <---------YAB1     --------->DAG2 <---------ANAC58 <---------GLK1(1) >GT1     <---------ZAT2    <--------HAHB4      ---------->DOF2 <---------ANAC58 --------->GLK1(1) --   atcttcattctcagcttctcggatcttgcatcattataaaagttgttgagaaaagcgacatttatttctttccaagttgtcagagatccaggcttcaact  13955800               <---------ANAC58               <---------ANAC58                                      <---------ALFIN1              <---------HSFB2a(1)                               --------->ANAC58              --------->HSFB2a(1)                           --------->YAB1              <---------HSFC1(2)                       --------->ARR14(2)  --------->ANAC58             --------->GLK1(2)       --------->ARR11(3)            <---------ANAC58  --------->ANAC58             --------->ARR14(2)      <---------ARR14(2)            <---------ANAC58 =====HOX2a_HOX2a              <---------ARR14(2)      <---------ARR11(3)     <----------DOF2 >REM1(1)     --------->HSFC1(2)                     ----------->ARR10        --------->TOE2(3) ---->ZmHOX2a(1)       <---------ATHB12        <---------AtLEC2 --------->ANAC58   <---------YAB1   ccttaagccaagaagatgcttccccatcaagagaatatgggaagagtttgcagggaagatagtcataagaaacaccctcgccttaatgcttgaaaccaag  13955900                                                                                          --------->HSFB2a(2)                   ------>ZmHOX2a(2)                                                      <---------HSFB2a(2)               <---------YAB1                          <-------TEIL               ----------->GT1         <------ZmHOX2a(2)                      ---------->DOF2              <---------REM1(1)     <-         <---------ATHB12  <---------MYB46(3)--------->AtLEC2             <---------AHL20(2)       <-   ttttcaaaccgatcaatatgatccataggttgttcttgtgctaaaccatggaaagggtgcatactcacaagagtatataatgtagggtttatcgagaaat  13956000                          <---------ZAT14                   <---------REM1(1)                          --------->ZAT14                 <-------GAMYB                     <---------SPL7                      <---------MYB46(3)                 ---------                 <---------MYB46(3)             --------->CCA1(2)                   ------>NtERF2              <------MYB46(1)                   <---------GLK1(1)                  --------->DEAR3(1)              <------MYB83<---------At4g35610  <---------ARR14(3)                  --------->MYB46(3)             --------->MYB111(1)               --------->ARR11(3)               ----------->HVH21             --------->MYB46(2)                --------->ARR14(3)               ------->GAMYB             --------->MYB111(2)               --------->ARR14(2)              --------->MYB46(3)        ---------->DOF2   --------->At4g35610  <---------ARR11(3)             --------->At4g35610   <----------DOF2  --------->ETT(1)           <---------ARR14(2)   <------NtERF2 xxxxxxxxxxxxxxxx>smallRNA(s) --------ANAC58 --------->ALFIN1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------At4g35610  -- --------ANAC58 <---------AtMYB61--------->ATHB12        <-----------RAV1(1)  <xxxxxxxxxxxxxxxxxxxxxx   tgcttctttcgaaagtaggtggtcggactgcagaccgattggaatagaagatattcggtctgttgtagtcgccaagagtcatccgacgaccatctgctct  13956100                          ----------->RAV1(2)                          <---------At4g35610                          --------->ZAT2                         <------MYB46(1)                          --------->At4g35610                   --------->MYB59                  ----------->RAV1(1) <---------ETT(2)     <---------ARR11(3)             <---------ANAC58     --------->ETT(2)         --------->ARR11(3)             <---------ANAC58    <------NtERF2   <------NtERF2  <---------TOE2(3)             --------->ETT(2)  <---------ANAC46 *TSS <----------DOF2                             ---- >At4g35610 <------NtERF2 <---------ZAT2  ------>NtERF2   --------->YAB1                       ------ ------->GLK1(1)  ====================RAV<---------ALFIN1<---------YAB1  ------>ZmHOX2a(1)    ------- xsmallRNA(se3)  xxxxxxxxxxxxxxxx>smallRNA(i)  <---------DEAR3(1)<------MYB83        <-----------GT1   gatttcttcttggtgtcgagcgacatccagctggtgtcgatcgacaccctcggcgatttatgatattaggttttcctgttcatctattttctaactcctt  13956200                                     ----------->RAV1(1)                                     =================RAV                              --------->ANAC58                       <---------ANAC58                       --------->ANAC55(2)          <---------ICU4                       <---------ANAC46            --------->ICU4                       ----------->GT1--------->At4g35610                       <---------ANAC58 <-----------HVH21                       <---------ANAC55(2)  <---------ANAC55(2)                   <---------ZAT14 <---------At4g35610              --------->ZAT2  --------->ANAC46     <---------YAB1                  ------>ZmHOX2a(1)         <---------WRKY18(1)  --------->ANAC58  <---------YAB1                    --------->TOE2(3)        ----------->HVH21   <---------ALFIN1--------->ANAC55(2)                   --------->TOE1(3)     xxxxxxxxxxxxxxxx>smallRNA(s)  --------->At4g35610 --------->YAB1         <---------GLK1(1) ----->MYB52(2)    --------->ZAT14 <---------ZAT2--------->YAB1        <---------ANAC58     ------>ZmHOX2a(1) >ZmHOX2a(1)  --------->At4g35610  --------->ZAT2<--------HAHB4        <---------ANAC46     --------- -->TOE2(3)   <---------ZAT2--------->ZAT6<-----------RAV1(2)          <---------ANAC58   -----------   agttgtatgcctgaccagctctgtagcgtaacactccagcagcatcaggtatcattatcagcatcttgtagttgcgtttgaattccttaaactcctgaaa  13956300                                                                              --------->At5g28300                                                                             ----------->GT1                                                                             --------->YAB1                                                                     ------>MYB46(1)                                                                     ------>MYB83                                                                   <---------MYB111(1)                                    ----------->GT1                <---------MYB59                                  ---------->DOF2                 --------->ANAC55(1)                       <---------ANAC55(2)                        --------->ANAC46     ---------->DOF2   <---------ANAC58                         <---------ALFIN1 >LBD16                <---------ANAC58                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      - >RAV1(2)              >>>>>>>>CAMTA3       ---------->DOF2     --------->REM1(1)                ----   cagaagaaaaagaagaaataaaaacgcgtgagtaacaaaagaaaaaaaaagcttagactaaattctacacctaatctaatggtaaatcgaagaaaacttc  13956400                                           <---------ALFIN1                                          --------->ZAT14                                          <---------ZAT14                                         --------->AtMYB61                                   ================================HOX2a_HOX2a                                   ------>ZmHOX2a(1)      ------>NtERF2               --------->TOE2(2)                      <----------DOF2     <----------ID1               --------->TOE1(2)              --------->YAB1            ----------    --------->At4g35610          --------->YAB1             =========================HOX2a_HOX2a   ------->GAMYB             <---------AHL20(2)             <------ZmHOX2a(2)    ------>ZmHOX2a(2) ---------->RAV1(1)         --------->AHL20(2)             --------->ARR11(3) <------ZmHOX2a(1) <xxxx ----->HSFB2a(2) --------->CCA1(2)--------->TOE2(3)        <---------ARR11(3) =======================   ggcaacagcgccaaatttgatatgggtcaaattaatcctaagaccacactctcaaataagagatcaattgtagtactttaggatcgaattcaacaaagct  13956500                  <---------TOE2(3)                                                                 -        --------->ANAC46                                              ---------->DOF2              <-        --------->ANAC58                                            --------->ANAC58              xxx   <------ZmHOX2a(2)                                           --------->ANAC58                  <--- --------->At4g35610<---------ARR11(3)                         --------->ANAC58---------->DOF2 <----- <---------At4g35610--------->ARR11(3)                    <----------ID1--------->ANAC58      <------ >DOF2  --------->ANAC58        <---------At4g35610     ---------->DOF2 --------->ANAC58  <---------TOE1(3) xxxxxxxxxxxxsmallRNA(s)        --------->At4g35610    --------->AHL20(2)     --------->AHL20(2) ---- =========HOX2a_HOX2a          <---------TOE2(3)  --------->AHL20(2)--------->ANAC58      <---------TOE2(3)   ctcagatcacacgatagactaagatttcgaattaagctaaacaaatagattataaaataaaagacaagacaagaaagcaataaaagagattgaaggttca  13956600  Previous    Next  AGI:  At3g33139.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 2.6e-40 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 13954116    to: 13956148    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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