Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                             --------                                            <---------GLK1(2)                                -------- ------>RAV1(2)                        ------>ZmHOX2a(1)                <---------YAB1       <------- -->DEAR3(1)                      <---------ALFIN1           >>>>>>>>>ARR2  --------->ARR14(2)  ----- >GAMYB                        --------->ANAC46     <-----------GT1 <-------GAMYB <----------DOF2 ->DEAR3(2)                   -------->P<---------LBD16    <---------YAB1<---------ICU4    <--------- ->MYB46(3)                  --------->AtMYB61 ----------->GT1<---------WOX13(1)<xxxxxxxxxxxxxxxxxxxx   ctgaatagattaagtagaccacaatattcgactaccccatccttcggaatcgtttatccatttgattgtctgttatcatttctgctttgttattcacctg  13937500                                                                               <---------ANAC58                                                                     ------->GAMYB                                                                    <---------MYB55(2)                                                                    <---------MYB52(2)                                                                    --------->MYB46(3)                                                                   -------->P  <---------AtLEC2                                                                   ------>MYB46(1)                                                                   --------->ANAC58                                                                   ------>MYB83<---------ANAC58                                                                   --------->ANAC58                                                                 --------->AtMYB61                                                                 <---------MYB111(1)                                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                --------->MYB46(3)                                                                --------->DEAR3(2) ->MYB83                                             <------ZmHOX2a(1)   <----------DOF2         <--- --->RAV1(2)                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <xxxxxxxxx ->At4g35610              <XXXXXXXXXXXXXXXXXXXXMIR1886.1<---------ZAT6 ------>MYB83 <---------ANAC58 --At4g35610             <-------TEIL       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <---------ANAC58 ->MYB46(1)<---------ARR14(2)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(s) --GT1     --------->ARR14(2)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(i) xxxsmallRNA(i2) <----------DOF2       <---------MYB52(1)<-------GAMYB ------>MYB46(1) <---------WRKY18(1)   cctgctattgccatttctgcttttagtttcatttcatttctgttattgcatactaggactgttagaaccaaccaactttctgcttggcttgacttagagc  13937600                                               --------->TOE1(3)                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                 --------->ARR14(2)                               --------->LBD16 --------->TOE2(3)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                             <----                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                    <-----                      <---------AtLEC2 <---------WOX13(1)                                     <------               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                           <------               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                    <---------AHL20(2)        <-----------ARR10<---------ALFIN1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      --------->AHL20(1)        --------->ARR11(3)   <---------LBD16xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <---------AHL20(1)        <---------ARR11(3)  --------->MYB52(1) <---------MYB59                         --------->AHL20(2)       <---------CCA1(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    <------ZmHOX2a(1)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->AHL20(2)     --------->YAB1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      <---------TOE2(3)<----- -------DOF2  <---------At4g35610<---------ARR14(2)                     <---------ZAT6 <---------AHL20(2) xxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <------ZmHOX2a(1)<---------AHL20(2)   tttctgatcatatctcatctgtttgcatcacaccggattggattgacaacctaaaatactacaacgataggatagtgttttaggattaatttaatgccgt  13937700                                         --------->TOE2(3)                                         --------->TOE1(3)                               --------->ATHB12                              --------->ICU4                              <------ZmHOX2a(2) -----MYB52(1)                <---------YAB1                                    <------------CBF --GAMYB                     --------->ARR11(3)--------->ARR11(3)             <---------YAB1 ---ANAC58                   <---------ARR11(3)<---------ARR11(3)           <----------DOF2 ---ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<------ZmHOX2a(2)     --------->ANAC58 ----At4g35610    <-----------------AGL3----------->GT1               --------->ANAC58  <----------DOF2   tgccagtcttgtgtttgtttgctatatttgagatcattagaaacgttaagatcaaggtcgtttttgttacacaagttactttcattgtgtcttttctatt  13937800                                                                   -------->P                                                                <---------At4g35610                          <-----------GT1              --------->ANAC58                  ----------->RAV1(1)        <------MYB46(1)    --------->At4g35610               --------->ANAC58              <------MYB83    <---------At4g35610                    -               --------->ANAC46           <---------MYB52(1) --------->ZAT2             <------ZmHOX2a(2)               --------->ANAC58         <---------YAB1 --------->ANAC58                <---------ARR14(2)        <---------At4g35610             ----------->HVH21    <---------ZAT2            --------->ARR14(2)       <---------------AtSPL8       <---------CCA1(2)---------->DOF2            *TSS --------->ANAC46   tttgtatttcaggtacccagcaacagttttactgactcatctctgataggtctactaaagccaagctgctacccgttgaatgcatacacgatcccaaggg  13937900                                            <---------At4g35610                                            <---------ZAT2                     <---------TOE2(3)                                            --------->At4g35610              ----------->HVH21                                           ------>NtERF2                     --------->WRKY12                                       --------->ANAC46                      ----------->TGA1                                       --------->ANAC58                   --------->ATHB12                                       --------->ANAC58                   <---------MYB46(3)                  --------->TOE2(3)  <---------ANAC58            ------->GAMYB<---------DOF5.7(2)         <----------DOF2      <---------MYB59                   --------->MYB46(3)        <xxxxxxxxxx   --------->ARR14(2)     --------->MYB46(3)--------->ZAT2    ----------->RAV1(1)   <xxxxxxxxxxxxxxxxsmallRNA(s) -------->YAB1    --------->YAB1     <---------ANAC58        --------->MYB46(3)<---------TOE1(3)   aatcagaacttctttttcaacgataacatcgaccgaattgctcgccaactgagagaacagacaacaacagacacaatggttgacgttgtagatgagcaag  13938000                                                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                <-----------TGA1                                                <-----------HVH21                                        --------->MYB46(3)                                      ------->GAMYB   XXXXXXXXXXXXXXXXXXX>MIR394A/B                                      --------->AtMYB61     --------->MYB52(1)               --------->TOE2(3)     ------>MYB83                    --------->MYB46(3)     ------>MYB46(1)                <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)    --------->ZAT14   <---------MYB111(1)            --------->MYB46(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    ========   <---------MYB59       <---------ANAC58   ------->GAMYB          <xxxxxxxxxxxxxxxxsmallRNA(i) -----   <---------MYB46(2)    <---------ANAC58  --------->MYB46(3)     --------->AtMYB61   <----------DOF2 -------->P   <---------MYB46(3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)    <---------ZAT14     <------ZmHOX2a(2) xxxxxxsmallRNA(i)   xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <---------ALFIN1   --------->MYB46(3)   agcaacctaacaacattggttatggtgacttccctcacaaccacaaccagcgtcatggcattgttccacctccagtacagaacaacaactttgagatcaa  13938100                                                      --------->ARR14(1)                                                      <------ZmHOX2a(2)                                                     --------->GLK1(2)                                                     --------->ARR14(2)                                                     <-----------ARR10                                                     <---------ARR14(2)                                       <---------ANAC58             --------->HSFB2a(2)                      <------ZmHOX2a(1)<---------ANAC46  --------->At4g35610              =================RAVxxxxxxxxxxxxxxxx>smallRNA(s)      <---------HSFB2a(2)              <-----------RAV1(1) <---------AtLEC2  ==================HOX2a_HOX2a     <---------YAB1<-----------RAV1(2) <---------ANAC58------>ZmHOX2a(2) ============================HOX2a_HOX2a            <------ZmHOX2a(1) ----->DOF2   <---------ATHB12   <-------TEIL  <---------ATHB12<------ZmHOX2a(2)         --------->ZAT14   aagcggtctcattgcaatggtgcaggagaacaagtttcatggcttgccaatggaggatccgctcgatcatctagacgagtttgaaaggctctgtagcctt  13938200                                                                                                    <                                                                                                    -                                                                                   --------->DOF5.7(2)                                                                XXXXXXXXXXXXXXXXXXXX>MIR824        <-                                                               <xxxxxxxxxxxxxxxxsmallRNA(i)      ----                                                              <xxxxxxxxxxxxxxxxsmallRNA(s)       xxxx                                                         xxxxxxxxxxxxxxxx>smallRNA(i)     --------->LBD16                                                       <----------ID1            xxxxxxxxxxxxxxxxxxxx                                              <---------------AGL15  ================================RAV                                             ----------------->AGL1  <-----------RAV1(1) <-----------RAV1(2)                                             <-----------------AGL3----------->RAV1(2)   <---------LBD16                        ----------->GT1    <-----------GT1 ---------->DOF2  ---------->DOF2    <-----   acaaaactcaatggagtttgtgaagatggtttcaagcttcgcttatttccattcttggagacaaagcccatctgtgggaaaagacgttaccccagggatc  13938300   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             <---------LBD16---  --------->ANAC58                                                    <---------ANAC55(2)         ---  --------->ANAC58                                                    --------->ANAC58 --------->ARR14(2) ---------ICU4            <---------ANAC58                            --------->ANAC46 <---------GLK1(2) -------->YAB1--------->RAP2.6(3)                                     --------->ANAC55(2)       ----- --------ATHB12        --------->DAG2                                 --------->ANAC58 <---------ARR14(2) ----->WOX13(1)       --------->DAG2                     --------->ARR14(2)      <---------ARR14(2) xxxxxxxxxxxx>smallRNA(i) <---------ANAC58            <---------HSFB2a(2)        --------->ARR14(2) x>smallRNA(i2)      ---------->DOF2                  --------->HSFB2a(2)   --------->YAB1    ------- -ZmHOX2a(2) --------->ATHB12               <<<<<<<<<TBF1<<<<<<<ZML2 <---------LBD16 --------->LBD16   aatcacgacctggaatgactgcaaaaaggcgttcttggcaaaattcttcttcaagtctagaactgcaagactacggaatgatatatccggattcactcag  13938400  Previous    Next  AGI:  At3g33133.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 1.6e-222 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 13937880    to: 13941690    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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