Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              --------->SPL7                                                                            <-------TEIL                                                                           --------->ALFIN1                                                                          <---------ARR14(2)                                                                         --------->HSFC1(2)                                                                         <---------HSFC1(2)                                                     --------->ZAT18     <---------HSFB2a(1)     --------->AtMYB61                               <---------ZAT18     --------->HSFB2a(1)    --------->bZIP60(1)                              <---------ZAT14  <------ZmHOX2a(1)    <---------bZIP60(1)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->ZAT18                    ---------->DOF2 --------->ZAT14 --------->ZAT2  <---------ZAT18                  <---------HSFB2a(2)               <---------ZAT2 ------CDC5                        <---------YAB1<---------DEAR3(1)<-----------RAV1(2) -->ANAC46              <---------GLK1(2)      <---------ANAC58 --------->TCP16(1) >ANAC58    <---------TOE2(3)      --------->HSFB2a(2)       --------->ALFIN1     --------->ICU4  <-- >ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------ANAC58 --------->TCP20  <----------DOF2<----   agagtgacctcaccaaggttgaaccagactctcagttctgaaagcgattgctcggtgcacagagtggagccaggagggttcggcattatcgccctcttgc  13903700                                                                <---------ALFIN1                                                              ------>ZmHOX2a(1)                                                             --------->ANAC46                                                          <---------ARR14(2)                                                          --------->ARR11(3)                                                          <---------ARR11(3)                                                          --------->ARR14(2)                                                         --------->GLK1(1)                                                         <---------GLK1(1)                                                       --------->YAB1            <<<<<<<<<TBF1           <----------DOF2  --------->SPL7                     ---------->DOF2     <----------DOF2                <---------MYB52(1)<---------YAB1                ---------->DOF2 < --------DOF2         <----------DOF2              --------->LBD16             ---------->DOF2      - --------------------ANAC81 ---------->DOF2       <---------ANAC55(2)      <----------ID1          <-   ctttcttctttttcttcttctcggctttctcaaaggccctttgctcggtaatccgtatgatatcctccatctcgtttgggccaaagtaaagaaagtcttc  13903800                                                           <---------RAP2.6(2)                                                           --------->ETT(1)                                                         <-----------HVH21                                              <---------SPL7                                              <-----------HVH21             ------>NtERF2   --------->ANAC55(2)      <----------DOF2           <------NtERF2     <---------ANAC55(1)    <---------ZAT2          <---------RAP2.3(1)<---------ANAC46<---------TGA1a         <---------RAP2.3(2) <---------ANAC55(2)    --------->ZAT2        <---------LBD16      <---------ANAC58--------->HSFB2a(1)                               ------     <---------ANAC58     <---------MYB52(1) --------->TGA1a <------NtERF2                     <-----     <---------ANAC58    <-------GAMYB      --------->SPL7--------->RAP2.6(3)                  <----- <----------DOF2         ==============================MYC_MYB                                 <----- ---------ICU4xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------TOE1(2)   <xxxxxxxxxxxxxxxxsmallRNA(i) -------->YAB1<------NtERF2  <---------ANAC58====================bZIP_DOF                      ------ --------ATHB12         <---------MYB46(3)<---------SPL7<-----------RAV1(1)     ------>ZmHOX2a(1)   aatctttacttgcggcaccaagggctcggttgcgtatagctagtcggacgtcccagctttgtcggccatcggagcaagggtccttcggacaagaggcagc  13903900                                                            ---------->DOF2                                    --------->ZAT14       ----------->HVH21                                    --------->At4g35610  --------->LBD16                                    <---------At4g35610  --------->At5g28300                                    <---------ZAT2      <---------ANAC58                               ----------->HVH21        <---------ANAC58                          --------->ANAC58              <---------ANAC46     <-----------HVH21    --------->ANAC58             <-----------------------TaNAC69(2)  --------->ARR14(2)     --------->LBD16    <---------ARR14(2)                     <---------SPL7 --->ZAT2               --------->LBD16 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <---------ANAC58 ----At4g35610         <---------HSFB2a(2)  --------->ARR14(2)                    <---------ANAC58 ----ZAT2     --------->ARR14(2)    <---------ZAT14--------->LBD16       --------->At4g35610 -NtERF2     --------->GLK1(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------At4g35610         --- --->At4g35610<---------ARR14(2)--------->YAB1  ------>ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   tcggtatcgtcgggcaaatccaattcccgagcaatgacagcagtggtatcctcccgagccgtgaaaggggttatctgcttagaggcgttcgaagacgatg  13904000                                                       <---------SPL7                                                      ------>ZmHOX2a(2)                                                     <------ZmHOX2a(2)                                                    --------->ARR11(3)                                                    <---------ARR11(3)                                          --------->CCA1(2)    --------->HSFC1(2)                --------->GLK1(1)        --------->ARR14(2)    <---------HSFB2a(1)              <------ZmHOX2a(1)          <---------ARR14(2)    <---------MYB46(3)           --------->LBD16        <---------ANAC58  <---------ARR14(2)        ------>ZmHOX2a(1)         <---------ANAC58  --------->ARR14(2)   --------->YAB1     --------->ANAC46----------------->AGL1   <---------HSFC1(2)                <--- ---->TEIL<---------TOE1(1)  <----------DOF2      ----------->ARR10                 ---------->DOF2   caccatcatcctccgaggatgtccaaaccatctttcgcttgcagatagggggaagatcgtacagatggttcgaatcgctggagtcgaaaagagaggcgct  13904100               --------->LBD16              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <---------HSFB2a(2)            <------ZmHOX2a(2)           --------->AGP1           <---------ARR14(2)           --------->ARR11(3)           --------->ARR14(2)           <---------ARR11(3)          --------->GLK1(1)          <---------GLK1(1)     <---------ANAC46                                                                       XXXXXXXXX   --------->ALFIN1          <---------At4g35610                                     --------->LBD16   <---------MYB46(3)      *TSS                                     <----------ID1   ----------->GT1  --------->ALFIN1--------->GLK1(1)                          --------->HSFB2a(2)    ------->GAMYB  <---------AtMYB61       <---------LBD16              <---------ARR11(3)     <---------------AGL15 <-------GAMYB--------->HSFB2a(2)         ----------->HVH21  <---------HSFB2a(2)   <---------LBD16 ------LBD16--------->CCA1(2)--------->At4g35610       --------->ARR11(3)     <----------DOF2--------   cggggttgtgggagatccagaattcattctcggctcagagacgtttgacgagacgaagaactacgagaaaaaaacaaatgctttaaccggcaaaatcaaa  13904200                 --------->ZAT2                 --------->At4g35610                 <---------At4g35610                <---------ARR14(2)                <-----------ARR10                --------->ARR14(2)               <------NtERF2              --------->LBD16             --------->ALFIN1             <---------DEAR3(1) ----------->GT1            <---------LBD16   --------->DAG2            <------ZmHOX2a(2)        --------->MYB52(1)   ---------->DOF2           --------->ARR11(3)   ---------->DOF2 <----------DOF2                     <---------ARR11(3)   --------->TOE2(3) XXXXXXXXXXX>MIR1888   <---------LBD16           --------->ARR11(3)   <------NtERF2     <<<<<<<<<TBF1 ->YAB1--------->ARR11(1)--------->LBD16   --------->YAB1      ---------->DOF2      <-----------GT1   acttataaagaaacggcggagcttcaccggaaaaagggaaaacaataagaatatcaagatcagagaaaaggaggcaaaccttgatttttcttcttcaaaa  13904300                                                                 <------NtERF2                                                                 --------->LBD16                                                                --------->ANAC58                                                                --------->ANAC58                                                             <---------PCF5                                                             <---------TCP16(1)                    <-                                                             --------->ARR14(2)                   <--                                                             <---------ARR14(2)                  <---                                                           <---------DEAR3(2)                   -----                                   --------->AHL20(1)     <---------ANAC46                     ------                                   <---------AHL20(1)    <------NtERF2    --------->YAB1       <-----                        <---------RAP2.6(2)             <-----------HVH21--------->ICU4        ------                       --------->RAP2.6(3)             -------------->OsCBT <---------YAB1     <-----                 ---------->DOF2   <---------ARR11(3)  <------NtERF2  --------->AHL20(2)       ------           <---------GLK1(1)       --------->ARR11(3) ------>NtERF2   <---------AHL20(2)       <-----           --------->GLK1(1)    --------------->AGL15<---------ANAC58--------->ICU4           <------          <---------ARR14(2)   <-----------------AGL3<---------ANAC58<---------ATHB12         <------         <------ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->ZAT18                -------       <---------TOE2(3)<---------DEAR3(1)  <----------DOF2<---------MYB46(3)                 <------   acttcaaatgaggatttctcaaagggacggctctcaatatatagaactttgaagggcgcgtcgggtccgcaataaatgatgaaacgcgttagaagcgcgt  13904400    --------->At4g35610    <------NtERF2  --------->ANAC58  --------->ANAC58 --------PCF2                                                                      ----------->HVH21 -------DEAR3(2)                            --------->ANAC58                   <---------AtLEC2 ------DEAR3(1)                      <---------KAN4(2)                         <---------ANAC46 ---->ALFIN1                     <---------HSFB2a(2)                          <------NtERF2 ->MYC2                          --------->HSFB2a(2)                       --------->At4g35610      - --MYC2                         <---------LBD16                            <------NtERF2            - ->PIF5                        ------>ZmHOX2a(1)                           <-------GAMYB   <---------RAP2.6(2) --PIF5                        <---------LBD16                             <---------At4g35610 ------ ->MYC3                      ------>ZmHOX2a(2)      --------->ARR14(2)    <---------RAP2.3(1)-------- --MYC3 ---------->DOF2    <---------ARR11(3)<---------MYB52(2)           <---------DEAR3(2)<-------- ---ANAC58             <---------ANAC58     --------->ANAC58              <---------ATERF1(1)<------NtERF2 ---ANAC46             <---------ANAC58 --------->ANAC46                 <---------RAP2.6(2)------>NtERF2 -->ALFIN1             <---------ANAC46 --------->ANAC58                 <---------DEAR3(1)<---------DEAR3(1) ---ANAC58          <---------DEAR3(1)  --------->ANAC58                 --------->ZAT18  <---------ZAT18   gggctcggcagaaagagaaacgtctgcgtgatcctcgggaataagcaagaaacgtttccacttctcaagagagagtcggctgcatgtaacagggcgcctg  13904500                                            --------->ANAC58                                            --------->ANAC58                                         <---------ARR14(2)                                         --------->ARR14(2)                                       --------->LBD16                                      --------->LBD16                                      <---------HSFB2a(2)                                      --------->ANAC58                                      --------->ANAC58                                      <------NtERF2                                     <---------LBD16                                   --------->ATERF1(1)                                   <------NtERF2                                  <---------ATERF1(1)                                  ------>NtERF2                                  <---------RAP2.6(3)                                 --------->DEAR3(1)                                 --------->ATERF1(2)                                      --------->ANAC58                                 <---------RAP2.6(2)                               <-------GAMYB                                 <---------ATERF1(2)                              <---------ANAC46       --------->ANAC58          --------->RAP2.6(2)                              <---------ANAC58       --------->ANAC58         --------->ATERF1(1)                               <---------ANAC58     <-----------RAV1(2)        --------->DEAR3(2)                               <------NtERF2     <- -------->ANAC58                --------->RAP2.6(3)  --------->GLK1(1)       --------->ZAT2        -- -------->ANAC58   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      ---------->DOF2<---------At4g35610  <-- ----->HVH21    --------->ZAT14--------->ZAT2        <---------GLK1(1)       <---------ZAT2   <------ --->RAV1(2)    <---------ZAT14<---------ZAT2       --------->ARR11(3)       --------->At4g35610  --- -ATERF1(1) --------->ZAT6     <---------ATERF1(1)  <---------ARR11(3)    --------->LBD16 --------->ANAC58   aaacgcctcaggcatcactacagagttgtcccgagccggcccggaaacgcctcagatatcacttcaaagagccatcccgagctggcgttggaacgcctcg  13904600  Previous    Next  AGI:  At3g33118.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 13901936    to: 13904127    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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