Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            ------>ZmHOX2a(2)                                         <------ZmHOX2a(2)                                 <---------LBD16  ------->TEIL            <---------ANAC58                                 <---------HSFB2a(2)                      <---------ANAC58                              --------->ARR14(2)  <---------ARR14(2)      <---------ANAC46                              <---------ARR14(2)  --------->GLK1(2)      <-------TEIL                              --------->ARR11(3)  --------->ARR14(2)   ------->MYC3                             <xxxxxxxxxxxxxxxxsmallRNA(i)              <-------MYC2                             <xxxxxxxxxxxxxxxxsmallRNA(s)              ------->MYC2                             --------->GLK1(1)   <---------GLK1(2)     ------->PIF4                            ---------->TaMYB80 --------->ANAC46        <-------PIF4                            <xxxxxxxxxxxxxxxxsmallRNA(i)               <-------MYC3       <---------ARR11(3)   <xxxxxxxxxxxxxxxxsmallRNA(s)               ------->MYC4      --------->GLK1(1)     <---------ARR14(2) --------->ANAC58        <-------MYC4      <---------GLK1(1)     --------->ARR14(2) --------->ANAC58        <-------PIF5     <---------ARR11(3)     <---------KAN4(2) --------->LBD16          ------->PIF5  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->ARR14(3)            <---------TGA1a ---------ARR14(2)     -------->P<-----------RAV1(2)                  <---------ANAC55(2) ---->NtERF2           ------>MYB83     --------->ARR11(3)            --------->O2                --- -------->HVH21        --------->MYB52(1)--------->GLK1(1)            --------->TGA1a            ---- ------>ZAT18          ------>MYB46(1)  <---------ARR14(3)            <---------ANAC58           ---- -------ZAT18         --------->MYB55(1)<---------ARR11(3)            <---------ANAC46           ---- -----At4g35610      <---------MYB59<------ZmHOX2a(1)<---------LBD16  <---------ANAC58           <--- ---->At4g35610      <---------MYB46(2) <---------ARR14(2)            <---------O2      <---------TOE2(3) ->LBD16             --------->MYB46(3)<------ZmHOX2a(1)              --------->ANAC55(2)   --------- >ANAC46         ----------->HVH21  =============HOX2a_HOX2a          <---------bZIP60(2)   --------- --CDC5--------->ARR11(3)<---------MYB59--------->ARR14(2)           ------------>OsbHLH66<------ZmHOX2a(1)   cggacatgatatctcagaactgacctaccgaatatccaggaggatccccacgaatctcggatgaagttagtcacgtgcgtagacttatataaggaagcaa  13889300   <---------ANAC46 ------>YAB1 ------->HVH21 ------->TGA1                                                                             <---------- ----->ICU4                                                                              --------->YAB1 ------ATHB12                                                                   <---------ARR11(3) >ANAC58              --------->YAB1              --------->ZAT6                --------->ARR11(3) -- >ANAC58         <-------TEIL --------->ZAT6 <----------DOF2                ---------->DOF2<---------YAB1   tgacgacttggaagacacattcattcatcttaacacttacacttatacttttacacttgtaatctcattctacattgtaaaagctcttctattatcaatt  13889400                                                                                                    x                                                                                                xxxxx                                                                                               xxxxxx                                              <---------ARR11(3)                              <------                                     <---------ANAC58                                         -------                                     <---------ANAC58                                         xxxxxxx                       <---------AHL20(2)     <---------ARR14(2)                             >>>>>>>>                 <---------TOE1(3) --------->ARR11(3)                                   <---------ZAT6    <-------TEIL <---------TOE2(3) <---------ARR11(3)     <----------DOF2               <---------ANAC46 -GT1  <---------MYB52(1)   --------->TOE2(3) <-----------ARR10                 xxxxxxxxxxxxxxxxxxxxx -------->DOF2  <-----------GT1---------->DOF2--------->ARR11(3)           <-----------GT1xxxxxxxxxxx   caaaagtccatttgttcttaacgatataaatctcaaagttcttgtgaatatctagccctcctttcttacaaatctatttacaaatctctagtgtggattt  13889500                            --------->ANAC58                      <---------ANAC46                     --------->At4g35610                     <---------LBD16                     <---------At4g35610                   <---------DEAR3(1)                 <-----------HVH21                 <---------SPL7                 <---------ATERF1(1)                --------->DEAR3(1)                <---------ANAC46                --------->RAP2.3(3)                --------->RAP2.3(2)               --------->ORA47(2)               --------->ATERF1(1)               --------->RAP2.3(1)               --------->RRTF1(1)               --------->DEAR4(2)                                                            <-------               <------NtERF2--------->ANAC58                                                 <-------              <---------RRTF1(1)                                                             <-------              ------>NtERF2--------->SPL7------>ZmHOX2a(1)                                <---------DEAR3(2)    ----------->RAV1(1)--------->LBD16 <---------HSFB2a(1)                                <------MYB46(1)   ----------------->AGL3 ------>NtERF2--------->HSFC1(2)                                 <------MYB83   <-----------------AGL3----------->HVH21        --------->AtMYB61              ------->GAMYB      < xxxxxxxxxxxxxxxxxxx>smallRNA(se3)     --------->HSFB2a(1)                   --------->MYB46(3)     < xxxxxxxxxxxxxxxxxx>smallRNA(l2)       ------>ZmHOX2a(2)                     <---------MYB55(2)   <-- xxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---------HSFC1(2)           --------->YAB1       <---------DEAR3(1) ---GLK1(1)   <---------ATERF1(1)     <------ZmHOX2a(2)           <------------CBF       <---------MYB46(3) -->GLK1(1)   <---------RAP2.3(1)    --------->ARR14(2)        ------------>CBF--------->At4g35610--- xxxxxxxxxxxxxxxx>smallRNA(le3)      <---------ARR11(3)    --------->ANAC58 ------>MYB83<---------ORA47(1) >>GATA-1    <---------DEAR3(1)      <---------GLK1(2)     --------->ANAC58 ------>MYB46(1) --------- xx>smallRNA(se3)------>NtERF2       --------->ARR11(3)  --------->MYB52(1)----------->RAV1(1)------- xxxxx>smallRNA(s)--------->ATERF1(1)<---------ARR14(2)<---------MYB52(2)--------->MYB46(3)<--------ZAP1   cagaacccacatttggcgccgtctgcggggacggaaatagatccttccaacaccaaaactaacgcatcaattgtgaccaacaactgaatggtcggtcaaa  13889600                      ---------->DOF2               <---------TCP20               --------->PCF2               --------->ANAC46              ------>NtERF2             --------->ANAC58         <---------ARR14(2)         --------->ARR14(2)                                                        <---------ALFIN1        <---------KAN4(1)                                                          --------->AtMYB61        <---------GLK1(1)                                                       <---------ALFIN1       ---------->TaMYB80                                                      <---------ZAT2     --- --WRKY38(1) --------->ANAC58                         *TSS            <---------ANAC55(2) --------->ANAC46 --WRKY45<---------ARR11(3)                        ------>NtERF2      --------->ANAC55(1)<---------HSFB2a(2) --WRKY12--------->KAN4(2)                        --------->DEAR3(1)  --------->ANAC58   ------>ZmHOX2a(1) ---------ANAC58  <---------ALFIN1             --------->ANAC46       --------->ANAC58   --------->LBD16 ---------ANAC58  ----------->RAV1(1)          --------->ANAC58       --------->ANAC46   --------->HSFB2a(2) -------ARR11(3)----------->RAV1(1)            --------->ANAC58       --------->ANAC55(2)============ ------>ARR11(3)--------->DEAR3(1)             <---------ANAC55(2)   <-----------------------TaNAC69(2) >WRKY18(1)  --------->ANAC46         <---------ARR14(2)     --------->MYB59 --------->ANAC46  ------ --->DOF2--------->ARR11(3)           --------->ARR14(2)     <-----------------------TaNAC69(2)------   gttcttgtgaatatcccgccccacaaaagaaaaacacgaggttcccattacgcctcccaaaattcggtagaaacgtaacccagcacctctcctcgaaacg  13889700                        --------->At4g35610                    ------>ZmHOX2a(2)                   <---------GLK1(1)                   --------->GLK1(1)                   <------ZmHOX2a(2)                  --------->ARR14(2)                  <---------ARR14(2)                  <-----------ARR10                  <---------ARR11(3)                  --------->ARR11(3)                                      <---------GLK1(2)                  <---------AGP1 <---------MYB111(1)           --------->At4g35610                  --------->GLK1(2)                         --------->At4g35610         --------->YAB1 --------->ZAT2            =======================HOX2a_HOX2a        ---------        <---------YAB1  <---------ZAT2            ====================================HOX2a_HOX2a     <---------AHL20(2) <---------At4g35610       <------ZmHOX2a(2)---------->DOF2     --------->DAG2 ---->TEIL--------->TOE1(2)      --------->MYB46(3)--------->YAB1 <------ZmHOX2a(1)--------->ANAC46 =========================HOX2a_HOX2a    <------ZmHOX2a(2)  <---------At4g35610====================== --->ANAC58      <------ZmHOX2a(1)       ================================HOX2a_HOX2a ---------->DOF2 --->ANAC58      ===============================HOX2a_HOX2a<-----------HVH21   ------>ZmHOX2a(1)   catcgattttatcatgggaggatctcagctctgcaactactcgatcaactcgatcaaaactcatcagaggaaagtagattcctacacaaaaggcaaaagc  13889800          ------>ZmHOX2a(2)         <------ZmHOX2a(2)        --------->ARR14(2)        <-----------ARR10        <---------ARR14(2)        <---------ARR11(3)                                                                      -----        --------->ARR11(3)                                                                      -----        <---------AGP1                                                                          -----        --------->GLK1(2)                                                                     -------       <------ZmHOX2a(1)                       --------->WRKY12               <----------DOF2<-------  --------->YAB1                               ----------->HVH21  --------->YAB1            ---------  --------->ATHB12    <------ZmHOX2a(2)    --------->MYB46(3)     <---------ICU4        --------->DEAR3(2) <---------YAB1      <---------ARR11(3)  <---------ARR14(2)      <---------YAB1        <---------ARR14(2) ->DOF2======================HOX2a_HOX2a --------->ARR14(2)      --------->ICU4        --------->ARR14(2) ===============HOX2a_HOX2a       ---------->DOF2         <-----------GT1     --------------------->WRI1   ccgatgataggatctgatcaccagatcacattttgggaaagcgaaaccactgacctcgataaacctcatgatgacgctctctttatccgaatcgacgtaa  13889900                                               <---------SPL7                                            <---------DOF5.7(2)                                           ----------->HVH21                                         --------->At4g35610                                         <---------At4g35610                                       <-----------RAV1(2)                                    <---------GLK1(1)                                    <---------ZAT2                                    <---------At4g35610                                    --------->ZAT2        <---------ATHB12                            --------->CCA1(2) --------->ANAC55(2)                           <---------ARR14(2)--------------->AtSPL8 ---->ANAC58               --------->ARR14(2)--------------->AtSPL3 ---->ANAC46             ----------->ARR10 --------->WRKY12 ---->ANAC58   --------->LBD16 <---------LBD16<---------ANAC58                                      - -->TGA2(2)   <---------ANAC46<---------ANAC46<---------ANAC58         --------->AHL20(2)           - --SPL7      <-----------------AGL3 --------->At4g35610   ----------->HVH21                         - >ANAC46--------->HSFB2a(1)--------->ARR11(1)<---------TOE2(3)------>NtERF2     <---------ALFIN1-----   gcaactacgaactctcccgtataagggtcgatacggggagctcagttgacgtactcttcaatgacgccttcaaaaaaatgggacacctcgattttaagct  13890000                                                                         <-----------HVH21                         --------->ARR14(1)                    <---------ZAT2      <------ZmHOX2a(1) <---------GLK1(2)                      --------->At4g35610     --------->ANAC58   --------->ARR14(2)                     <---------At4g35610     --------->ANAC58   <---------ARR14(2)            <-----------GT1<---------ALFIN1 -------->ANAC58      --------->LBD16           <----------DOF2--------->ZAT2 -------->ANAC46    <---------LBD16        <----------DOF2 ------>MYB83 <-----------RAV1(1)     <---- -------->ANAC58   --------->MYB52(1)     <---------DAG2   ------>MYB46(1)         <----------------- ---->CCA1(2)      -------->P          <---------ALFIN1 --------->MYB46(3)         <------ZmHOX2a(1)<   acaaggcaggaaaatgccacttaccggattcgctggagataccaccttttctttagaaaccatccagctccccactgtcgcaagaggagtgagacaactc  13890100                                                                           <-----------HVH21                                                              --------->ANAC46        --------->TOE1(1)                                     --------->ANAC58       ------>ZmHOX2a(1)                                      --------->bZIP60(2)    ------>MYB46(1)                                           --------->ANAC55(1)    ------>MYB83                                              --------->ANAC58           <---------YAB1  <---------MYB59                  --------->ANAC46         <---------ALFIN1            -------->P -----ICU4                   <----------DOF2               <---------REM1(2) --------->SPL7 ------TaNAC69(2)       <---------At4g35610      --------->ANAC58         --------->DEAR3(1)<-------- ---------ARR11(3)   ---------->DOF2             --------->ANAC58  --------->AtLEC2   <---------MYB111(1)   atgaccttcctcgtagtcgataagaaagctcctttcaacgcgatactgggaaggccatggctacacgccatgaaaaccgtcccatccacttaccattaat  13890200  Previous    Next  AGI:  At3g33112.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 3.8e-100 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays) Range:  from: 13889654    to: 13892293    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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