Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       --------->ANAC58                                                           <xxxxxxxxxxxxxxxxsmallRNA(i)                                                         <---------ZAT14                                                         --------->ZAT14                           <-                                                    --------->At4g35610                            --                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                  <-----                                                <xxxxxxxxxxxxxxxxsmallRNA(s)                   ------                                               --------->WOX13(1)    --------->ANAC46         <------              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----------->RAV1(2)                      <-------             ------->TEIL         <-----------GT1<---------ATHB12    --------->ANAC58        ------>ZmHOX2a(1)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(i)                  <xxxxxxxxx    <------MYB46(1)       <---------ZAT6 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <xxxxxxxxx    <------MYB83          ----------->GT1<xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)             <---------ALFIN1 -------->ARR10          <---------TOE1(3) <xxxxxxxxxxxxxxxxsmallRNA(i)              <-----------GT1   tagatttggttaatgaacttgttgtctagggttaatttactgagcatgtcaatcacctgtaaactgagaaaacgaaactactcaatttccccatcctcgg  13612700             xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <---------WOX13(1)       <---------At4g35610                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <----------DOF2                                                           --------->ARR14(2) --------GLK1(1)                                                         <---------ZAT14 ------->GLK1(1)                                                         --------->ZAT14<-----------GT1 ----HSFB2a(2)                                                           <---------At4g35610  xxxxxxx --->HSFB2a(2)                                                 <---------ANAC58       <xxxxxxxxxxxxxx ---LBD16 --------->ATHB12                                     <---------ANAC46    <---------ANAC58 --LBD16 <---------YAB1   <-----------GT1      ------->TEIL    <---------ANAC58    <---------ANAC58 xxxxxxxsmallRNA(i) <----------DOF2      <-----------GT1    <---------MYB52(1)  <----------DOF2 xxxxxxxxxxxxxxsmallRNA(fl3)            <---------ZAT14   <-----------RAV1(1)<---------ARR14(2)  <xxx   gaattctttatctgattgaattctttgtttactatattgttgtttactgcatcttgttatctgttgcttaatttctgcagttctttcttgttactcgacc  13612800                                  <---------ZAT14                                  --------->ZAT14                                xxxxxxxxxxxxxxxx>smallRNA(s)                                <---------ZAT14                                <xxxxxxxxxxxxxxxxsmallRNA(s)                              <xxxxxxxxxxxxxxxxsmallRNA(i)                              xxxxxxxxxxxxxxxx>smallRNA(s)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                            <xxxxxxxxxxxxxxxxsmallRNA(i)                            <xxxxxxxxxxxxxxxxsmallRNA(s)                            xxxxxxxxxxxxxxxx>smallRNA(i)                           ------->GAMYB                          xxxxxxxxxxxxxxxx>smallRNA(i)                          --------->MYB46(3)<---------ARR14(2)                                      <                          <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                       ---                         xxxxxxxxxxxxxxxx>smallRNA(s)                                 --------->ZAT14                         xxxxxxxxxxxxxxxx>smallRNA(i)                                 --------->ZAT18                         <---------At4g35610<-----------ARR10                         <---------ZAT14                        <xxxxxxxxxxxxxxxxsmallRNA(i)                              <xxxxxxxxxxxxxxxxsmallRNA(i)                        xxxxxxxxxxxxxxxx>smallRNA(s)                              <xxxxxxxxxxxxxxxxsmallRNA(s)                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   <xxxxxxxxxxxxxxxxxxxxxx                        <xxxxxxxxxxxxxxxxsmallRNA(s)                          <xxxxxxxxxxxxxxxxsmallRNA(i)                        <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    ----------->HVH21xxxxxxx                        ----------->RAV1(1) --------->ARR14(2)              --------->AtMYB61xxxxxxxx                  <---------AtLEC2<---------ZAT18                          <xxxxxxxxxxxxxxxxsmallRNA(i)        <---------ALFIN1<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        --------->AtMYB61<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <---------MYB52(1) <---------ZAT18       --------->MYB46(3)--------->At4g35610--------->GLK1(2)     <-------GAMYB <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxx>smallRNA(s)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxx xxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------MYB46(3)  xxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)<xxxxxxxxxxxxxxxxsmallRNA(i)    xxxxxxxxxxxxxxxx>smallRNA(s)--------   tcatactcgaccacctagttgtatggcaacagactgtgcagtcgagtatctgtgtttcattttttgtctgttactcgacctcacccagtgctctgcaaag  13612900                                                                                              <------                                                                                           <xxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                               --------->AtMYB61    x                                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                            --------->ANAC46  <------                                                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                            --------->ANAC58  <------                                                                            --------->ANAC58 --------                                                                           <xxxxxxxxxxxxxxxxsmallRNA(s)            >>>>>>>>>TAC1                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <------MYB46(1)                                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <------MYB83                                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <xxxxxxxxxxxxxxxxsmallRNA(s)                                      <<<<<<<ZML2xxxxxxxxxxxxxxxx>smallRNA(i)      <---------MYB46(3)                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------AtMYB61                                                <xxxxxxxxxxxxxxxxsmallRNA(i)  <  --------->ALFIN1                                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <-----------RAV1(1)                                                <---------HSFB2a(2) <xxxxxxxxxxx xxxxxxxxxxxxxxxx>smallRNA(s)                                        --------->HSFB2a(2) xxxxxxxxxxxx <xxxxxxxxxxxxxxxxsmallRNA(s)                                      <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxx xxxxxxxxxxxxxxxxsmallRNA(s)                                   <------ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxx ------>At4g35610    <---------At5g28300                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <- xsmallRNA(si3)     <-----------GT1                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <- xxxxxxxxxxxxxxx>smallRNA(si3)                              xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<------ xxxxxxxxxxxxxxx>smallRNA(fl3)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxx xxxxxxxxxxxx>smallRNA(fl3)                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxx xxxxxxx>smallRNA(fl3)                               --------->ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -->DOF2   <---------ANAC46                          <---------ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   agctgtgttggtcgagtgttttttactgtttctgtttcattttctgttttctgcatattcacttaggactgctagaacacaccaaaacctgttattgctt  13613000                                                      <---------WOX13(1)                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                        <---------ALFIN1                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            <------------CBF     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->ANAC58   xxxxxxxxxxxxxxxx>smallRNA(i)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <xxxxxxxxxxxxxxxxsmallRNA(i)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             xxxxxxxxxxxx  <xxxxxxxxxxxxxxxxsmallRNA(i)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    xxxxxxxxxxxx  <---------WRKY18(1)             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    xxxxxxxxxxxx xxxxxxxxxxxxxxxx>smallRNA(s)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    xxxxxxxxxxxxx xxxxxxxxxxxxxxxx>smallRNA(i)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                  <xxxxxxxxxxxxx xxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                xxxxxxxxxxxxxxx <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <------MYB83 ---ANAC46                     <---------MYB46(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxx xxxxxxxxxxxxxxsmallRNA(le3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   xxxxxxxxxxxxxxx xxsmallRNA(i)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <------MYB46(1) xxxxxxsmallRNA(se3)           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  xxxxxxxxxxxxxxxx xxx>smallRNA(se3)            <---------WOX13(1) <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  xxxxxxxxxxxxxxxx xxxxsmallRNA(se3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  <xxxxxxxxxxxxxxx xxsmallRNA(si3)             <------------CBF<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    xxxxxxxxxxxxxxxx xxxxxxxxxxxxxxx>smallRNA(i)--------->ATHB12--------->ANAC58                        xxxxxxxxxxxxxxxxx ---AtLEC2                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <---------WOX13(1) ---ANAC58                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    xxxxxxxxxxxxxxxxx ->ATHB12                  <---------YAB1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   xxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          xxxxxxxxxxxxxxxxx xxxxxsmallRNA(s)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    <------------CBF < xxxx>smallRNA(i)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   --------->ATHB12 -- xxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xx>smallRNA(fl3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------ANAC58        --------->ARR11(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <---------YAB1   <-- --------ANAC58     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ----- ---ANAC58 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->TOE1(3)--------->CCA1(2)<---- xxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <------   ggcttgacttagtgacttctgatcacatcttgattgttagcatcacacccatttggattgacaaccttcagtactacaacgatatgattggtgttttagg  13613100         *TSS <---------WOX13(1) xxxxxxxxxx>smallRNA(si3) xxxxxxxxxxx>smallRNA(si3) xxxxxxxxxx>smallRNA(fl3) xxxxxxxxx>smallRNA(le3)                                 ------>MYB46(1) xxxxxxxxxxsmallRNA(fl3)                                 ------>MYB83 xxxxxxxx>smallRNA(se3)                             <---------ALFIN1 xxxxxxx>smallRNA(si3)                              --------->RAP2.6(2) xxxxxxxx>smallRNA(le3)                            --------->MYB46(3) xxxxx>smallRNA(fl3)                               <---------MYB55(2) xxxxxxx>smallRNA(le3)                            ------>MYB83 xxxxxxxsmallRNA(le3)                             ------>MYB46(1) xxxxxxx>smallRNA(si3)                           --------->ANAC58 xxxx>smallRNA(si3)                              --------->ANAC58 xxxxx>smallRNA(si3)                             --------->ANAC46                                   < xxxxxx>smallRNA(se3)                           --------->DEAR3(1)                                 <- xxxxx>smallRNA(le3)                            --------->MYB46(3)                               <--- ------------CBF                               <---------At4g35610                               <--- ------->ATHB12              <----------DOF2  ------->TEIL                  <---------At4g35610 <---- -------YAB1             <---------ZAT18    --------->ZAT18   <---------ATHB12             --------->CCA1(2) ---->YAB1          <---------YAB1          <---------ZAT18 --------->WOX13(1)            <---------ARR14(2) --ZmHOX2a(1)     --------->YAB1  --------->At4g35610  --------->AtMYB61    --------->At4g35610------ ---TOE2(3)      <---------YAB1   <---------At4g35610------>NtERF2   <---------YAB1       --------->ARR14(2)   ataattgactaaaaaaactattatcaatgccctttgtgctgactaatgcaccagccaccttccaatcagtgatgaatgagctgtttagaccatatatgcg  13613200                                                                                              -------                                                                                              -------                                                                                              <------                                                                                              <------                                                                                          <-------GAMYB                                                                                       <-------TEIL <---------MYB52(1)  --------->bZIP60(1)                                              --------->GLK1(2) ---------MYB52(1)   --------->ETT(2)                                                 --------->ARR14(1) --------DEAR3(2)    <---------bZIP60(1)                                             <---------ARR14(2) ---NtERF2           --------->ANAC46                                                --------->ARR11(1) ------LBD16<---------ZAT18                                                          --------->ARR14(2) -----RAP2.3(1) <----------DOF2         --------->YAB1                               <---------GLK1(2) --->ANAC46<---------ZAT6 --------->GLK1(2)  <---------REM1(1)         <---------TOE2(3)xxxxxxxxxxxxx   ccggtttgttttagtgttctttgacgacattctggtatacaatcttgatgtagagacacatctcaaacacttagaggtttttcttcagattcggttacag  13613300                                                                                               ------                                                                                             ------>ZmHOX2a(2)         ------>NtERF2                                                                      <------ZmHOX2a(2)        --------->ANAC58                                                                   --------->ARR14(2)        --------->ANAC46                                                                   <---------ARR14(2)        --------->ANAC58                                                                   <---------ARR11(3)   <-----------ARR10              <---------ANAC58                                         --------->ARR11(3)   --------->ARR14(2)             <-------GAMYB  --------->YAB1                           <---------At4g35610  <---------GLK1(2)               <---------ANAC58                                 --------->GLK1(2) -->ANAC55(2)        --------->ARR14(2)       --------->GLK1(1)                 ----------->ARR10 -->HSFB2a(2)        <---------ARR14(2)       <---------GLK1(1)                <------ZmHOX2a(1)  --- ---ANAC55(2)  --------->YAB1    <---------MYB46(3)<---------YAB1   --------->ZAT6<---------GLK1(2) ---HSFB2a(2) <---------ATHB12<----------DOF2<---------ARR11(3)  --------->YAB1=====================HOX2a_HOX2a xxx>smallRNA(i)   ----------->ARR10         --------->ARR11(3) <---------YAB1 ====================HOX2a_HOX2a   aacaggttctacgccaatgagaagaaatgccactttggttgcacaaggatatcatatttgggccatatgatcactagcgaaggagattctacagatccca  13613400                                                         <----------DOF2                                                     --------->LBD16                                                   <---------LBD16                             <-----                                                   --------->LBD16                             <-----                          <---------ALFIN1        <---------ANAC46                           <-------                 --------->DAG2                  <---------LBD16                        --------->MYB52(2)             --------->YAB1--------->DEAR3(1) --------->ZAT2                            --------->ALFIN1            <---------TOE2(3)                 --------->At4g35610                       <-----------RAV1(1)   --------->CCA1(2)      --------->MYB46(3)  <---------ZAT2                        <---------HSFB2a(1) ----->RAV1(1)  ---------->DOF2               <---------At4g35610      ----------->GT1  ============= ------->DOF2----------->GT1            --------->MYB52(1)----------------------->TaNAC69(2) <-------   caaagatagaagctatggtaaagtggccacagcccaagaatataacagagctgcgcgggtttttaggccttactggttactacagaaggtttgtggcagg  13613500                                                                                                  <--                                                                   <-------TEIL                 <----                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                               <---------------AtSPL8          <-----                                                  <---------AtLEC2--------->CCA1(2)            <----- -MYB83             ----------->HVH21    ----------->GT1       --------------->AtSPL3        -------- -MYB46(1)        --------->At4g35610   ----------->GT1        <---------TOE1(3)        ---------->DOF2 --ANAC46     --------->ANAC58       ---------->DOF2      <-------GAMYB             <----------DOF2 ====RAV      --------->ANAC58     --------->ANAC58       --------->At4g35610   <---------TOE2(3)<--- ----RAV1(2)---------->DOF2        --------->ANAC58      <---------MYB46(3)<----------DOF2   --------   ttatgggaagatagcaaagccactgacagaattactcaagaaagggaaatttgaatggtctgttgaaggtacaagtacttttgaggctttaaaagaggcg  13613600  Previous    Next  AGI:  At3g33083.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 4.1e-144 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus) Range:  from: 13613109    to: 13615638    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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