Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        ----------->GT1      <---------ANAC55(2)                             --------->YAB1      --------->ANAC58                                --------->ATHB12      --------->ANAC58                                <---------ICU4 --------->WOX13(1)                                   --------->ATHB51<---------AHL20(2) ------->GT1<---------AHL20(1)                        <--------HAHB4 --------->AHL20(1) -->ZmHOX2a(1)                               <---------YAB1          --------->AHL20(2) ->ARR14(2) <---------AHL20(2)          ---------->DOF2 --------->ICU4<---------YAB1 --ARR14(2) --------->AHL20(1)     ----------->GT1   --------->ICU4  <---------AHL20(1)           <--   tgtaaatcaagtaaaatatttgataacaagcttaagtaagtaaaaagatgatggaataattagtaatccaatataatagaatatacttacaaattgtctc  13565100                <---------WOX13(1)          <---------MYB46(3)                                                                        -          ----------->GT1                                                                  <------MYB83     --------->ARR14(2)                                                                    <------MYB46(1)     <---------ARR11(3)                                                                   <----------     <---------ARR14(2)                                                                   -----------     --------->ARR11(3)             <---------WRKY38(1)                                   -----------    <------ZmHOX2a(1)               <---------WRKY12                                      --------->MYB111(1)  <---------TOE1(3)                --------->WRKY18(1)                                    <----------  <---------TOE2(3)      <----------DOF2                                    ----------->HVH21      -- --------DOF2 --------->MYB52(2)  <-----------HVH21 <-------GAMYB         --------->At4g35610 <------   ctttaaggatattggttaattgctctactttcgaagggtcaaccatgtatagggggttgtatgagacatttccagcctctgactgttttgagttggtaca  13565200                                                                                              <------                                                                                          <---------ANAC58                                                                                          <---------ANAC55(1)                                                                                          <---------ANAC58                                                                                          <---------ANAC55(2)           <-----------RAV1(1)    <------ZmHOX2a(1)                                       --------->ANAC55(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                ----------->HVH21 ----->ZmHOX2a(1)              --------->HSFB2a(2)                                     <---------SPL7 -----AtSPL3                   <---------HSFB2a(2)                                    <---------DAG2 ---->AtSPL8        --------->TOE2(3)                                     <----------DOF2 <---------ANAC46 ---->AtSPL3  <---------MYB46(3)--------->LBD16                           --------------->AGL15 -----AtSPL8<-------GAMYB      <-----------RAV1(2)                        <---------------AGL15 ------->ANAC46     --------->TOE1(3)                                     <---------DAG2--------->MYB52(1) -TEIL     ================================RAV     <-------TEIL          <-----------------AGL3   tcctccaccaagactgttgttcccttaaaacctccaggaagggcatcatcaagttcatagactagttgtttcttcactttttttgggaccttacgggttg  13565300                              <---------ICU4                              --------->ATHB12                             <---------YAB1                          --------->MYB46(3)                           --------->REM1(1)                  <---------WOX13(1)                      ------->GAMYB                          >>>>>>>>>ARR2                  --------->REM1(1)                          >>>>>>>>>ARR1          <----------DOF2----------->RAV1(1)                --------->ATHB12 <---------AHL20(2) --------->At4g35610                    <---------YAB1                    -------- --P<-----------GT1 <---------At4g35610  <-------TEIL    --------->YAB1      <---------AHL20(2)     <   catttttttcttcttttgcttcaactgcaacatcattgtctgattcatcttgtaaacaaatatgattgtcaacaactgttttattcgtttttctataata  13565400                                                            <---------At4g35610                                                            --------->At4g35610                                                          --------->REM1(1)                                                        <----------DOF2                           <---------YAB1             --------->At4g35610     --------->At5g28300  <---------AHL20(1)----------->GT1 ----------->RAV1(2)           <----------    ----------->GT1  <-------TEIL          <---------DEAR3(1) ----------->HVH21        -------------- ->YAB1          <-------TEIL   <---------TOE2(3) <-----------GT1               *TSS   <------------- -------TEIL    --------->CCA1(2) <------ZmHOX2a(1)<---------At4g35610      <---------AtLEC2   cgtccatggtaaaaatagatacatacattatttttaggaatagggacggttttatctgcttcatctgaccttgggtttggatgaaggaatttgtaccatg  13565500                                                                                                   --                                                                                                   <-                                                                       ---------->DOF2             <-                                                            <---------AHL20(2)                     --  <-----------GT1                          ----------->GT1 --------->AHL20(2)                  ------ -GT1                          <------------CBF     ---------->DOF2  <------ZmHOX2a(2)      <-------- ->AtSPL8                   ------------>CBF  --------->REM1(2)     <---------ARR11(3)  --------->TOE2(3) --AtSPL8            --------->YAB1     <---------ARR11(3) <---------AHL20(2)       --------->KAN4(2)   tttataacgatttataaaactaatcacaaattcaattgccaagaactgtgtaaacaaagaattaaatctagatcaaagggtttgaatataccttgatatt  13565600                                                                              --------->ANAC46                                                                              --------->ANAC58                                                        ----------------->AGL1--------->ANAC58        --------->ICU4                                  <-----------------AGL1<xxxxxxxxxxxxxxxxsmallRNA(s)      ---------->DOF2                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          <---------ANAC58      --------->ANAC58  <---------LBD16                                  ----------------------->TaNAC69(2)  <---------At4g35610                     --------->ANAC58                --------->ANAC46  --------->At4g35610                     --------->ANAC58         --------->ARR14(2) ------->ZAT14                            --------->ANAC46         <---------ARR14(2) --------ZAT14                         <---------At4g35610   --------->MYB52(1)<xxxxxxxxxxxxxxxxsmallRNA(s) --------At4g35610                   <-----------GT1<---------ANAC58      --------->ANAC58 ------->At4g35610           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->GLK1(1) --->GLK1(2)                <---------TOE2(3)    <-----------RAV1(1)    <---------ALFIN1 -ARR11(3)    ------->TEIL  <---------TOE1(3)    --------->ALFIN1<---------MYB52(1)      <------ZmHOX2a(2)   ctgcagcggaaagatgaaccatattgtttcaaggttgttttagcaccccaagtgttgtgcctctaccggtatccacacgcacacaaactggatcagattt  13565700                        --------->TOE2(3)                     <---------CCA1(2)                 --------->ARR11(3)                 <---------ARR11(3)                           <---------TOE2(3)    ------->TEIL          <----------DOF2                               <---------AHL20(2)  ---------->DOF2----------       <---------ARR11(3)                       ---------->ID1<---------TOE1(3)   <---------CCA1(2)   agaatgctagttcttttgaggtcttatctcaaaactcagacaaactatttgtctctatatttttagggttttgtgatcaaaagtgtatctcacaaaagtt  13565800                                                   -------->HAHB4                                                   <---------ICU4                                                   --------->YAB1                                               >>>>>>>>>GT-1                                           <---------YAB1                                           <---------TOE1(3)                                         <---------ICU4                                        <---------ATHB51                                        <---------ATHB12                                      --------->WOX13(1)                                     --------------->AGL15                                     <---------------AGL15                                    ----------------->AG                                    <-----------------AGL3                                    <-----------------AG                                    <-----------------AGL1                                    ----------------->AGL2                                    ----------------->AGL3                                         --                                    <-----------------AGL2                                       <---                                    --------->MYB46(3)                                           <---                               --------->TOE1(3)  <---------ATHB51                               <---                               --------->TOE2(3)  --------->ICU4                             <-------   --------->AHL20(1)       <-----------GT1<---------TOE2(3)                 <---------AHL20(2) <----   <---------AHL20(1)   --------->TOE2(3)--------->YAB1             <---------ATHB12 ------>ZmHOX2a(2)   <---------AHL20(2)--------->MYB52(1) --------->ICU4 <----------ID1        <---------YAB1  <------- >DOF2     --------->AHL20(2) --------->ZAT6----------->GT1---------->DOF2<----------DOF2xxxxxxxxxxxx   gctaatatatcatatatatagccaaacgtttaaccctaaccaattatggttaataatgggccaaagcccaataactctttttattgatctattttgctta  13565900                                                                                       ------>MYB46(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                            <---------MYB59   ----------->HVH21                                                                 <---------MYB111(1) --------->ALFIN1                                                                 ------->GAMYB ------->ALFIN1                                                                <-----------GT1 ------ANAC46                                                              <---------YAB1 --------->AHL20(2) ------ANAC58          <---------AHL20(2)                                 --------->TOE2(3)<---------YAB1 ------ANAC58<------MYB46(1)       ----------->GT1                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --ANAC58   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -----AtMYB61<------MYB83      --------->YAB1      <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <---------MYB46(2) --ANAC58  <--------P --------->YAB1         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->MYB46(3) xxxx>smallRNA(i)----------->GT1 --------->ICU4    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)------>MYB83   ggtgtgtgaccctgtaggtttgtataatattagtaataagttataactcatagattataagcggtctctagcaaaacattataaccacctaatattatac  13566000  Previous    Next  AGI:  At3g33009.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 13561237    to: 13565480    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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