Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               <------------------------ANAC81                         <----------DOF2                        <---------DAG2                      ------>NtERF2                     <---------ALFIN1                   ------>MYB46(1)                   ------>MYB83                  --------->ANAC46                                               ----------->GT1                 --------->TOE1(2)                                               <---------YAB1                ----------->RAV1(2)                                              --------->ICU4                <---------HSFB2a(1)                                            <---------ICU4                --------->HSFB2a(1)                              --------->GLK1(1)-------->HAHB4                --------->HSFC1(2)                         <---------TOE2(3)   --------->YAB1               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------WOX13(1)    --------->ICU4               --------->GLK1(2)                      --------->ATHB12      --------->YAB1              <---------GLK1(2)                     <---------WOX13(1)     <---------YAB1      <-----              <---------ARR14(2)                  --------->ATHB12   <---------YAB1  --------->AHL20(2)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <---------YAB1  <---------GLK1(1)--------->YAB1 -----ANAC46  --------->ARR14(2)         <-----------GT1<---------YAB1 <---------GLK1(2) <-------TEIL   gtgtaagtaaacttcagaacctgccacctttgcatttgatttttttcatttttgattgattaatgtgaaatctgattctcataatgataaattcattttg  13513500                                                               <---------YAB1                                                              --------->AHL20(2)                            --------->At5g28300              --------->YAB1 <---------ARR11(3)                            <-------GAMYB<---------ICU4     <---------YAB1  --------->ARR11(3)                           <---------MYB46(3)            <---------AHL20(2) <---------GLK1(2)                           <---------DEAR3(2)        --------->ICU4       --------->ICU4                          <---------DEAR3(1)         <---------YAB1     ---------->DOF2      <----------DOF2   ------------>AtMYB77       --------->YAB1--------->GLK1(2)                 -- ------RAV1(1)   <----------DOF2        <---------YAB1<---------ICU4 ----------->GT1           <-----   ttgcagagctttagcatcactttaatcggcggttaacagttgataattccaattcataattcattataatctggtaaagattttgggcaatttcattaga  13513600                                                       ---------->DOF2                                                    <---------------AGL15                          <-                                                    --------->YAB1                              -----                           --------->ANAC58         --------------->AGL15                     -------             --------->AHL20(2)             <-----------GT1                                   <------             <---------ICU4--------->ANAC58--------->YAB1                <---------HSFB2a(2) <------NtERF2            --------->AHL20(2)          --------->WOX13(1)            <---------YAB1       <---------RAP2.6(2) --------->GT1     <----------DOF2 <----------DOF2 <---------YAB1  <---------YAB1       <-----------RAV1(1) ----YAB1   <---------AHL20(2)---------->DOF2<---------TOE2(3)   ----------->GT1        <---------YAB1   attgtttattgaaaataatttctttgagcaagtaaagcttttcaattaacattttcataaagagaaattgttattctagtaattcatattatggtggcca  13513700           --------->AHL20(2)           <---------AHL20(2)          --------->AHL20(2)     <----------DOF2          --------->AHL20(1)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                            <----          <---------AHL20(1)    <----------DOF2                                            --------->HSFB2a(2)          <---------AHL20(2)    <---------DAG2                                             <---------HSFB2a(2) --------ICU4                 ------>NtERF2                    <---------ANAC46           <---------LBD16 ---->WOX13(1)                --------->LBD16               <-----------RAV1(1)   <---------ATHB12<-- ---------->AGL1            <---------LBD16          --------->AHL20(2)        <---------AHL20(2)---- -----------AGL2      --------->AHL20(2)             <---------AHL20(2)       --------->AHL20(2)-----   attagggctgaatttattttggaaaaaaattccgcctttttttgagttttgatatttattttgtgttgtgttctcacagatttaatcaattttctggatt  13513800                                                        ------>ZmHOX2a(1)                                                      ------>ZmHOX2a(2)                                                     <------ZmHOX2a(2)                                                    --------->ARR11(3)                                                    <---------ARR11(3)                                                    --------->ARR14(2)         <---------ARR14(2)                         <---------ARR14(2)         --------->ARR14(2)                    --------->TOE1(2)         <---------GLK1(2)                    --------->ANAC58   ----------->HVH21                     --------->ANAC46 <----------DOF2                         --------->ANAC58 -----KAN4(1)                 ------------>CBF--------->ANAC58     <---------ANAC46           ------- -------YAB1                 <---------------------WRI1--------->TOE2(3)         ---------->ID1   xxx ----->KAN4(2)   <---------YAB1          --------->ANAC58          <---------ANAC58        <---------YAB1 ---->KAN4(1)    --------->ICU4 --------->WOX13(1)----------->ARR10<---------ANAC58<----------DOF2<--   attctttgacagatttgttatgattttagtttgccaatctcacaaggcacctaagatcctaagttatttgcttatgcaaccttgtctttttttgtgatta  13513900                                                                                                    <                                                                                                   <-                                                                                                   --      <------NtERF2                                                                                <-      xxxxxxxxxxxxxxxx>smallRNA(s)                                                     --------->ZAT2    *TSS                                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)            <---------ZAT2    <---------RAP2.6(2)               <----------DOF2                                  <---------At4g35610    <---------ANAC58                 <---------ANAC46                              <---------ALFIN1<-    <---------ANAC58     <---------MYB52(1)                  <-------GAMYB         ----------->RAV1(1)    <---------ANAC46     --------->ARR14(2)        <------ZmHOX2a(1)  --------->DAG2   --------->At4g35610 -->ICU4                 <---------ARR14(2)       ----------->GT1    ---------->DOF2 <---------ALFIN1 xxxxxxxxxxxxxxxxx>smallRNA(fl3)     <---------ANAC58     <---------At5g28300     --------->MYB46(3)- ----ZmHOX2a(1)      --------->LBD16 <---------ANAC58    <-----------GT1        --------->PCF2     <-   ggaatggcgtcttctagtcataccgcagttattcgcttcgcttgtatgaagtaggaaaatcaccgttgcaaaaaaggagtatgacccacagctgctatgt  13514000                                      <-----------RAV1(1)                                      <---------ANAC46                                      --------->ALFIN1                                  <---------At4g35610                ---------->DOF2   --------->At4g35610              <------ZmHOX2a(2) ==================RAV             --------->ARR11(3) <-----------RAV1(2)             <---------ARR11(3)<-------TEIL         ---------->DOF2    <---------ANAC58 ---------------AGL15       <---------ANAC46 ----------------AGL2       <------MYB83 --------------->AGL2       <------MYB46(1) ----------------AG         <---------ANAC58 ----------------AGL1      --------->MYB111(1)                       <----------DOF2   ---------->DOF2 -------------->AGL15      --------->MYB59                 <---------ZAT14       --------->ZAT14 ---- ----------------AGL3      --------->MYB46(2)--------->ICU4--------->ZAT14       <---------ZAT14 <---   ttctcaaattggaaagatcaaagatggattaggtgcagatgtgtgggatgatgaagaaaactacacttggtctttttctaaagtttactgaaagtggatt  13514100                                           <---------ANAC58                                     <----                                           <---------ANAC58                       ------>ZmHOX2a(2)<-                                           <---------ANAC46                  <---------WOX13(1) <----             ---------->DOF2           --------->At4g35610             <---------MYB46(3)       -----     <--------P                    --------->GLK1(2)                <---------ANAC46          <------    <---------ANAC58            --------->ANAC46                   <---------AtMYB61          -------    <---------ANAC58            --------->ANAC58         <-------TEIL <---------ANAC46--------->ANAC58 ----->AHL20(2)              ------>ZmHOX2a(1)          --------->AtLEC2   --------->ATHB12  -------- ------AHL20(2)   <-------TEIL  --------->ANAC58<---------ETT(2)   --------->ALFIN1   --------->ANAC58   tatatgggttgcccagaaagttcatttcttcctcacgaatcagttgcgagtcgacaacatgcatgagatgtggtgtttgattgatcgcaggccaataaga  13514200                                                           --------->ZAT6                                                         <<<<<<<<<<<<<<<<<LFY                                                        ----------->HVH21                                                     --------->GLK1(2)                                                    <---------ARR14(2)                                                    <---------GLK1(2)    <----------DOF2                              <---------TOE2(3) -----ARR11(3)                                  <-----------GT1 ----------GT1                             <---------AHL20(2)                                    ---- -----GLK1(2)                             <---------AHL20(1)                           --------->HSFB2a(2) ---->ARR11(3)                 <------NtERF2   ----------->HVH21                       <---------HSFB2a(2) ---TOE2(3)               ------->GAMYB   --------->AHL20(1)                           --------->HSFC1(1) ---->ARR10             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                          <---------LBD16 ->YAB1                --------->MYB52(1) <---------ARR11(3)   ----------->GT1     <---------GLK1(1)   ttttcgctctacgagtttgagaacataacgggcctcaattgcgatatatttgacgattctgacactggtgaaactgattacaaagagttctggaatgaaa  13514300                                                                                              <------                                                                                            ---------                                                                                            <------MYB46(1)                                                                                            <------MYB83                                                                                            <--------                   >>>>>>>>>>>>>>>>>LFY                                                    --------->MYB55(2)                 <------MYB83                                                              --------->MYB111(1)                 <------MYB46(1)                                                           --------->MYB46(2)                <---------AtMYB61                                                          <---------MYB46(3)               <---------MYB52(1)                                                          <---------AtMYB61              <-------GAMYB                                                                --------->MYB111(2)             <-----------RAV1(1)                                                          <---------MYB55(1)             --------->MYB55(2)                                                           <--------P             --------->MYB52(2)                     <XXXXXXXXXXXXXXXXXXXXMIR863-5P       <-------GAMYB         =============MYC_MYB                      <---------TOE2(3)  <-------GAMYB     --------->MYB55(2)         --------->O2                     ------->MYC2              <---------ANAC58    <---------MYB46(3)         --------->TGA1a                  <-------MYC2              <---------ANAC58    --------->ATHB12   <--------P<---------DEAR3(2)           <-------MYC3              <---------ANAC46   <---------YAB1   ================MYC_MYB                ------->MYC3      --------->ANAC58        <---------YAB1 ----->ALFIN1<---------MYB46(3)          <---------ANAC46   --------->ANAC58      <------ZmHOX2a(1)   tgggggtagcaacgtctgttggtccattgtttacagagttggaacgtgtatttgagattagcaagacatggcgtttggagaagaggatgatggttggtag  13514400  Previous    Next  AGI:  At3g32966.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 13513904    to: 13517128    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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