Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <----------DOF2 --------->At4g35610                              <---------ZAT18 <---------At4g35610                              --------->ZAT18 ---TOE2(3)              <---------ZAT14         --------->ALFIN1 ---TOE1(3)              --------->ZAT14       --------->ALFIN1                         <----------DOF2 ---AtMYB61   --------->At4g35610      --------->TOE2(3)                      <---------ANAC58 -->MYB59     <---------At4g35610      --------->TOE1(3)         <---------TOE2(3) --------->YAB1 <-- ---->AGL1   ------->TEIL<---------ZAT18------>ZmHOX2a(1)<---------GLK1(2)    <---------ANAC58    ---   ttgagcttccttttgcatctgattcagtttactcttaacttccttaacagtgtgggctagcttctctatggtttcttcttgcttatcagactttgttttg  13443000               --------->ZAT14               <---------ZAT14               <-------TEIL                       <---------TOE1(3)              --------->ALFIN1          <---------WOX13(1)            --------->At4g35610         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <---------At4g35610       <---------MYB46(3)             <---------AHL20(2)          <-----------RAV1(2)         --------->ATHB12         <---------At4g35610        <-----------HVH21          <---------ANAC46        --------->ALFIN1       --------->ANAC58            <---------ANAC58     <---------TOE1(3)       --------->ANAC58            <---------ANAC58     <---------TOE2(3)   --------->ANAC58               <---------MYB46(3)    <---------AtMYB61   --------->ANAC58             <---------WOX13(1)<---------TOE2(3) --------->AHL20(2)           <--- -------At4g35610             --------->ATHB12    <---------TOE1(2) --------->YAB1               ---- ------>At4g35610     --------------->AtSPL8      <---------TOE2(2)<---------YAB1     ------>ZmHOX2a(1)   agctctcgcaagtcaggtgcagagattgtacttgattgggtgattgaattcgaaggttgaggttgagctattatatgttcttctactccttcagtttcaa  13443100                                                                    <-------GAMYB                                                                   <---------ANAC46                                                                   <---------ANAC58                                                                --------->ARR14(2)                                                                <---------ARR14(2)           <-----------HVH21                                --------->ZAT18       --------->LBD16                                      <---------ZAT18       ------>ZmHOX2a(1)                                    <---------ZAT14      <---------LBD16                                       --------->ZAT14                         -     ----------->RAV1(2)                           <---------WRKY18(1)                             <- ------>ZmHOX2a(1)                                --------->WRKY12 <---------ANAC58                -- ------ARR14(2)                      <-----------GT1   <----------DOF2                         <----- ----->ARR14(2)                <---------TOE2(3)  --------->WRKY38(1)                          <-----   atccttctcctggggtcactctatcccatcttagaggtttttccatctattgttgacctttgtgcagtttcgttgatgtcaaactacagcttgatgtgct  13443200                                                                                      <---------MYB52(1)                                                                                    ------>ZmHOX2a(2)                                                                                   <------ZmHOX2a(2)                                                                                  <---------ARR11(3)                                                                                  --------->ARR14(2)                                                                                  --------->ARR11(3)                                                                            <-----------RAV1(2)                                                                           =============HOX2a_HOX2a                                                                           <------ZmHOX2a(2)                                                                           ==================HOX2a_HOX2a                                                                         ==================HOX2a_HOX2a                                                                       <---------TOE2(2)                                               ----------->RAV1(2)     --------->LBD16------>ZmHOX2a(1)                                       <---------WOX13(1)              <---------TOE1(2)<---------TOE2(2) --------->LBD16                     --------->ATHB12      ---------->DOF2<-----------HVH21     <---- -------->LBD16            ----------->HVH21  <---------ALFIN1 <---------ARR11(3) <---------ARR14(2) --------HSFB2a(2)     <---------CCA1(2)   --------->PCF2--------->ANAC58<------ZmHOX2a(1)      <---- ------->HSFB2a(2)<-----------GT1   <---------YAB1       --------->ANAC58=================HOX2a_HOX2a ----ANAC58      <-----------GT1 xxxxxxxxxxxxxxxx>smallRNA(i)  --------->ARR11(3)<------ZmHOX2a(1)  < ----ANAC58    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------>NtERF2    <---------LBD16--------->TOE2(3)   tcccgaggttgagacatattttcccatctctgacatctatgattgctcccactgaggccaagaaaggtcttcccaggatcagaggatccttaggttttgc  13443300                                                          <---------RVE1(1)                                                         <---------ARR11(3)                                                         --------->ARR14(3)                                                         <---------ARR14(2)                         <------MYB46(1)     --------->YAB1             <------NtERF2                         <------MYB83        <---------ICU4------>ZmHOX2a(2)                        <---------------AtSPL3           --------->ARR14(2)                        --------------->AtSPL3           --------->ARR11(3)                        <---------------AtSPL8           <---------ARR14(3)      --------->ANAC46  --------------->AtSPL8           --------->AGP1----------->GT1     ----------   --------->ARR14(2)   --------->MYB59<-------GAMYB     <---------AGP1--------->RAP2.6(2)*TSS   <---------ARR14(2)   --------->MYB111(1) <---------ATHB12     <---------At4g35610      <xxxxxxxxxx  <---------CCA1(2)--------->ICU4  --------->ANAC46     <---------CCA1(2)  --------->HSFC1(2)-------- -----ANAC58   ------->GAMYB<-------TEIL<---------MYB52(1)<------ZmHOX2a(2)<---------HSFC1(2)-------- -----ANAC58--------->MYB52(1)   <---------ALFIN1       <---------ARR14(1) --------->HSFB2a(1) xxxxxx ---------------AGL15   --------->MYB46(2)--------->WOX13(1)<----------DOF2<---------HSFB2a(1)-------   ttccatatccagcacaacgaaataagtaggtacttccactccgttaatcaagactagcagatcttttagcaggccgaaaattccaattgatcagaaagca  13443400                                   <---------TOE2(3)                              ------>ZmHOX2a(2)                             <------ZmHOX2a(2)                            >>>>>>>>>GATA-4                            >>>>>>>>>GATA-3                            --------->AGP1                            >>>>>>>>>GATA-2                            >>>>>>>>>GATA-1                            --------->ARR11(3)   --------->GLK1(1)                            <---------ARR11(3)  --------->ARR14(2)                   <-----------GT1    <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <---------GLK1(2)             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <---------ARR14(2)      ------>ZmHOX2a(1)--------->ZAT14 >DOF2--------->YAB1       --------->GLK1(1)  <---------ATHB12         --------->TOE2(3) <---------ZAT14 xxxxxxsmallRNA(i)   --------->LBD16----------->GT1     --------->MYB46(3)<xxxxxxxxxxxxxxxxsmallRNA(s) ->ANAC58           <---------HSFB2a(2)    --------->TOE2(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ->ANAC58           --------->HSFB2a(2)    --------->TOE1(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(fl3)   --------->DAG2<---------GLK1(1)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----->CBF    <---------MYB52(2)   <---------TOE1(3)    <---------MYB111(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   ataggcattaagaacaactaatccagaagagatctataaggtaaaccaaggattcccaactactctaacccatcctcagaaacctagtcactactcagac  13443500                                                  <---------ATHB12                                ---                                              --------->MYB46(3)                            ---------                                              <---------MYB52(2)                            ---------                                     <---------YAB1--------->YAB1                           ---------                              --------->YAB1----------->RAV1(1)       <------ZmHOX2a(1)   ---------->DOF2                         <---------YAB1    <----------ID1     --------->YAB1            --------->YAB1   ttcatttcagaaaacataaacgatgacatgaatgaaaacatcatagcaacaaatgataacagaacaataacaggatgaacaacttagtaatgaaaagcaa  13443600                 --------->ANAC46                 --------->AHL20(2)                 --------->ANAC58             xxxxxxxxxxxxxxxxx>smallRNA(si3)                 --------->ANAC55(2)        --------->ANAC58                 <---------ANAC55(2)        --------->ANAC58      <---------ATHB12                      --------->ANAC46                ------->TEIL    --------->WOX13(1)                      --------->ANAC55(2)         <---------------AtSPL8 ------>ARR14(2) --------->ANAC58          <---------LBD16              --------->DAG2          ----- >ANAC58       <-----------GT1           <---------ETT(2)              ---------->DOF2 ---------->DOF2 >ANAC58---------->DOF2            --------->GLK1(2)          ----------->GT1----------->RAV1(2)<---- -->GT1--------->YAB1 ----------->GT1    --------->ETT(2)    <---------HSFB2a(2)--------->TOE1(1)   aatactcaatcaaagtattacgaaatgttaagaagacaatctgtctacggaataaaacatagtctcgaaaatataaagtacctggtacttatagcgaaat  13443700                                                                    <<<<<<<<<<GATA-1                                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         ------>ZmHOX2a(1)                                         <---------GLK1(1)    <---------GLK1(1)             <----------ID1                   --------->GLK1(1)              <--    --------->GLK1(1)--------->ANAC58                    <---------ANAC46             <---------YAB1  --------->LBD16    --------->ANAC58                <---------ANAC58    --------->ZAT6        ------ ---->HSFB2a(1)      --------->ANAC46                <---------ANAC58    --------->ANAC46      ------ -----HSFB2a(1)      <----------ID1           --------->MYB52(1)<xxxxxxxxxxxxxxxxsmallRNA(s)<--------   gttccgaaatcctaatactcaaaacgacatagtattgggacgaattaagaacggtacttgtgggttctgaaatccacactagagatttgtaattgagatt  13443800                                                                          <---------ICU4  ---------->DOF2  <---------ZAT14                                    --------->ICU4 <----------DOF2 -------YAB1       --------->ZAT14                           <---------DAG2     ---------->DOF2 --->ICU4 <-------GAMYB                                      <----------DOF2<---------YAB1 --->GLK1(2) ----------->ARR10                             ------->TEIL  --------->ICU4 -TOE2(3)----------->GT1           ----------->GT1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       ----   atgagaaaggagggttagaacttcactgaaaccttgagagttatattgctaagaacgaatggactttttgtattgattatgacaaagcttttacaatgtg  13443900  Previous    Next  AGI:  At3g32898.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 5.0e-61 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 13442689    to: 13443390    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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