Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    <---------SPL7                                                                                 <---------ANAC46                                                                                --------->RAP2.3(1)                                                                                <------NtERF2                                                                               <---------ATERF1(1)                                                                               ------>NtERF2  -------                                                                               <---------RAP2.3(1)                                                                              <---------DEAR3(1)                                             <---------ANAC46                --------->RAP2.3(1)                                  --------->ATHB12                           --------->ATERF1(1)                             --------->ARR11(3)                             <---------ATERF1(1)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ANAC58         <-------TEIL    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->ATERF1(1)  --------->ANAC58 --------->ARR11(3)   <---------AtLEC2     ------>ZmHOX2a(2)--------->DEAR3(1)   ccacaagctcatactttgtaagaccctgatacatcttcatttgcattgtggagagaaactcgatcgtttccttcttgtaggcgccgtatggataagacat  13441300                                                           <---------ANAC58                                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                                     --------->ZAT2                          <------MYB46(1)            --------->At4g35610                          <------MYB83               <---------At4g35610                       ------                         --------->MYB46(2)          <---------ZAT2                       --------->LBD16                         --------->MYB111(1)         ----------->RAV1(2)             <---------SPL7                         --------->MYB59------>ZmHOX2a(1)  <---------ANAC58     <-------TEIL---------                         --------->MYB111(2)       <-----------RAV1(2)        --------->ARR14(2)                        <--------P xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <---------ARR14(2)          ----------->HVH21  <-------TEIL          <---------ALFIN1<---------YAB1--------->ANAC55(2)< -->CCA1(2)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(s)   <---------LBD16   gagtgtctctaggtgacacttctcaagtaggtgcttcacatcctcgagtagccccagctgggcttgagtctgatagtagggatacgtcgttccccagaaa  13441400                                                                    <---------ANAC58                                             --------->ANAC58       <---------ANAC58                                             xxxxxxxxxxxxxxxx>smallRNA(s)    <---------ZAT2                           --------->ANAC58       ----------->RAV1(2)    <---------At4g35610             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------>NtERF2    --------->ZAT2                 --------->ARR14(2)       <----------DOF2    --------->At4g35610            <---------ARR14(2)     --------->At4g35610 --->GLK1(1)            xxxxxxxxxxxxxxxx>smallRNA(s)   <---------At4g35610   ----------->HVH21 >LBD16             <---------ARR14(2)    --------->WRKY18(1)    <-----------GT1 ----------->RAV1(2) -----------HVH21   --------->ARR14(2)   <-----------HVH21--------->ZAT2--------->ANAC46   tcgttcagctcgaagagtctcatatactcttcgactggaacctcgtcaagcctgtttagcagctttgtttccctgcgccatgaccctggctcatactcag  13441500                            ------>MYB83                     --------->YAB1             --------->WOX13(1)--------->ANAC46                                             <--------           <---------YAB1   ------>MYB46(1)         --------->ANAC58                        ---------        ------>ZmHOX2a(1)   -------->P              --------->ANAC58                        <--------       <---------ANAC58   <---------MYB59   <----------DOF2  <-----------GT1                <--------       <---------ANAC58   <---------MYB111(1)    ------>ZmHOX2a(1)           <---------ANAC46   tcttaagttccttatcaatctactcatacctactcgacatcgctctctttcctctagcaattttagccattctctaattacgttgagctatagagcgttc  13441600                                                                                               <-----                                                                                               <-----                                                                                               ------                               ------>ZmHOX2a(1)                                      <-------TEIL >>                             =================================HOX2a_HOX2a             ------>ZmHOX2a(2)                           --------->ARR14(2)                                        <------ZmHOX2a(2)                           <---------ARR11(3)                                       --------->ARR14(2)                       <---------ICU4                  =====================================HOX2a_HOX2a                       --------->YAB1        <---------O2                     --------->GLK1(2)<----- -ANAC58              --------->ICU4         <---------ANAC46              --------->AHL20(2)  ------ >HSFB2a(1)      <---------ANAC46           <------NtERF2       <-------TEIL<---------YAB1     <----- -ANAC58----------->HVH21  --------->ARR11(3)--------->O2    --------->At4g35610    <---------ARR14(2) -HSFB2a(1)   <----------DOF2------>ZmHOX2a(2)         <------ZmHOX2a(1)  --------->YAB1       ------   catttttgctctgaagctttcgtaaacatgatcctctctcactggcctcgtgaaccaggacttagcttcatccacattataatctggatccatagaagat  13441700       ----------->GT1     <---------ZAT18     --------->ZAT14     <---------ZAT14                                                      ------->GAMYB ----GLK1(2)                                                             --------->ANAC46 ----ARR14(3)                                                            --------->ANAC58 --->ARR11(3)                                                         --------->TOE1(2) >>>>>>>>>>>>>>>LFY                                              --------->MYB52(2) ----ARR14(2)                                                    <---------MYB46(3)            <----- --->ARR14(2)   ----------->TGA1                               <---------MYB52(1)   <----------ID1 ----ARR11(3) <---------ICU4                                  --------->TOE2(3)  ---------->DOF2 --->ARR14(3) --------->YAB1*TSS            ---------->DOF2 ------->TEIL --------->ANAC58--------->MYB52(1)   tttccagtgtagttactcatgacgaaacatgaaaacagatggaactcaaagagaaacgtttgtacgttagttccaacgaaaccaaaagcacaaaccgatc  13441800                                                                             --------->ZAT14                    <------------CBF                                         <---------ZAT14                   <---------ICU4                                 <------MYB46(1)                   --------->ATHB51                              <---------MYB46(3)         <------ZmHOX2a(1)                   -------->ATHB1                                --------->MYB46(2)        <------MYB46(1)                   --------->ATHB12                              <---------AtMYB61         <------MYB83                  <---------YAB1                             <---------RAP2.6(3)         <--------P                  --------->AHL20(1)        <---------MYB46(3) <---------MYB52(1)      <------MYB46(1)                  <---------ATHB51 <---------WOX13(1)        <---------DEAR3(2)        <------MYB83           ----------->GT1       --------->ATHB12          <---------LBD16   <---------ETT(2)       <-----------HVH21        --------->ICU4             ----------------->AGL1     --------->MYB111(1) <---------ZAT14  <---------AHL20(2) --------->ATHB12  <----------DOF2       --------->ETT(2)       < -ZmHOX2a(2)      --------->ICU4<---------YAB1  <---------DEAR3(2)<------MYB83        <---------AtMYB61   gagtaaaccggtcgagtaaaattattggtttttgatgattgtttggctgtcggttttctttgccggtttggtgatgcagtcgactgagttggtaggaaca  13441900                                                                                        ------>ZmHOX2a(1)                                                                                     xxxxxxxxxxxxxxxx                                                                                    --------->ARR14(2)                                            ------>ZmHOX2a(1)                       <---------ARR14(2)                                        <---------ALFIN1                          <---------MYB46(3)                                        --------->AtMYB61                        --------->ALFIN1                                       --------->bZIP60(2)                       <---------AtMYB61                             ======================HOX2a_HOX2a                 <---------ANAC46                      ---------->DOF2 ------>NtERF2                          <---------ANAC58                 --------->SPL7      <---------ALFIN1                        <---------ANAC58               <---------SPL7<------ZmHOX2a(2) <---------CCA1(2)             <---------ANAC46 ----------ID1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   atgagacaagagcccttggtacggtgaagcgatcgagtgccacctcctcttatctttcttcgtggctgaatcgatgaagtcgtgtggttcctcttctatg  13442000                                                                                                <----                                                                                                <----                                                                                            <-------GAMYB                                                                                            <--------                                                           --------->ANAC46                 <--------                                              ----------->GT1---------->DOF2               <---------MYB46(3)                                       <---------ICU4      --------->ANAC58             <----------DOF2                        <---------GLK1(2)<---------YAB1    --------->ANAC58          --------->ARR11(3)                   <---------ANAC46   --------->ICU4     --------->MYB52(1)          <---------ARR11(3) xxxxxxx>smallRNA(se3)----------->ARR10--------->YAB1 ------->TEIL            ----------->GT1   <----   gtctccgtctcccttgggattgagtagattgtcgagtcgaataatgagaggtaatgaactcacgaaagaagaagagagaatggtgaagttctttggttgc  13442100                     <-----------HVH21                    <---------bZIP60(1)       --------->ALFIN1                                                                         -----    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 <------ZmHOX2a(1)     -----   <-----------RAV1(2)               --------->CCA1(2)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->CCA1(2)  --------->bZIP60(1)                               --------->ALFIN1    <---------ANAC46 -----ANAC58     --------->ALFIN1   <---------ARR14(2)            --------->DAG2        <------MYB46(1) -----ANAC58    >>>>>>>>>TAC1       --------->ARR14(2)           --------->MYB52(1)     <------MYB83 -ANAC58 <---------AtMYB61          --------->ARR11(3)         --------->ARR11(3)       <---------MYB46(3) -ANAC58 --------->ALFIN1     <------ZmHOX2a(1)<---------AtMYB61--------->CCA1(2)      <---------AtMYB61 -----ANAC46   <---------ANAC46    <------ZmHOX2a(1)       <------ZmHOX2a(1)        <---------MYB46(3)   gagagacaggtgtggtcgagtgttgtcagtgaggagaggatatagccttgaggtcgagtgaggaagataagggtgaggatgagggatggatggtggagaa  13442200  Previous    Next  AGI:  At3g32897.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 13439869    to: 13441728    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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