Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  ------>NtERF2                                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                               <---------ALFIN1                                                               --------->RAP2.6(2)                                                   --------->ANAC46                                                   <---------ANAC55(2)                 <---------GLK1(1)                 --------->ANAC55(1)                 --------->GLK1(1)                 --------->ANAC55(2)          xxxxxxxxxxxxxxxx>smallRNA(s)             --------->ANAC58                           <------       XXXXXXXXXXXXXXXXXXXXX>MIR771           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            <------       --------->HSFC1(2)                     --------->YAB1  --------->MYB46(3)    --------->TOE2(3)      --------->ANAC58                        <---------ICU4--------->ANAC46        --------->TOE1(2)      --------->ANAC58              <-----------ARR10  <-----------HVH21            --------->TOE2(2)  <---------HSFB2a(2)          --------->AtLEC2    --------->ANAC58                xxxxxxxxxxxxxxxxxx  --------->HSFB2a(2)  <---------------------WRI1 --------->RAP2.6(3)     ------>ZmHOX2a(1)--------->ALFIN1 ->DOF2<---------HSFC1(2)   <-------TEIL   --------->WOX13(1)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   ccttccacaagcttctgtgatatccatcgattcattcaaatctatccatcatcacggcatcacagccacctctatcctttgctcaacctaagagtgtcga  13434300                <---------ICU4             <XXXXXXXXXXXXXXXXXXXXXXXMIR829.1           ------>ZmHOX2a(2)          --------->GLK1(1)         --------->ARR11(3)         <-----------ARR10         --------->GLK1(2)                                                              --------->CCA1(2)         <---------ARR11(3)                                                             <------ZmHOX2a(2)         --------->ARR14(2)                                                            xxxxxxxxxxxxxx         <---------AGP1         <---------ZAT14                                        <---------AGP1         <---------ARR14(2)     --------->ZAT14                                        <---------ARR11(3)        <------ZmHOX2a(1)       <---------ZAT18                                        <---------ARR14(2) ================HOX2a_HOX2a    --------->ZAT18                                        --------->AGP1 ------>ZmHOX2a(1)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                          --------->ARR11(3) =================HOX2a_HOX2a <---------ZAT14                                          --------->ARR14(2) ---ANAC58<------ZmHOX2a(2)   <---------ZAT18                  --------->YAB1         <---------CCA1(2) ---ANAC58<---------GLK1(1)   --------->ZAT14                 <---------YAB1 ---------->ID1       <-- xxx>smallRNA(se3)   ----------->GT1    ---------->DOF2   <----------DOF2 <----------DOF2------>ZmHOX2a(2)   gtccttgggaggatctcatcatgtggtaacagagcacactctgaaagttgagttttccatctttatcattttgtgtcttttcgtcttcagatctgtgtcc  13434400                                        <---------AHL20(2)                                       --------->AHL20(2)                               <------MYB83             <---------AHL20(2)<------MYB46(1)             --------->AHL20(2)<---------ANAC46                                                     -            --------->AHL20(2) <---------ANAC58                     <---------HSFB2a(2)             - <-----------HVH21             <---------ANAC58          <-----------HVH21                          < xx>smallRNA(i)     --------->YAB1  ----------->GT1     ------->GAMYB ---------->DOF2              <- -------MYB52(1)   <---------YAB1<---------ANAC46     --------->At4g35610             ----------->GT1   gtctgtcaccttgatttaattttcataactatttggtgtgataaaattgcgaaatcaactgtcacgagttcgaaaagagtctagtattttgtaaaattgt  13434500                                                                                          <---------ANAC58                                                                                          <---------ANAC58                                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                              <---------TOE1(3)           <---------ANAC46                                                              <---------TOE2(3)           <---------ANAC55(1)                                                        --------->ICU4             <-----------HVH21                                                      --------->YAB1              ----------->GT1 -------->HSFB2a(2)           <-----------GT1         <---------ANAC46       ----------->HVH21 -------->HSFC1(1)        --------->ICU4              ----------->GT1      <---------At4g35610 ---------HSFB2a(2)  --------->YAB1        ----------->GT1 --------->ICU4  --------->At4g35610 --------LBD16      ----------->GT1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->GLK1(2)     -----   ttctggaatttgtgggaacgaattgataatttttagcatccgaacaagtgaaactgtcgtaattagggttttagagcatctgaagggtcatttcgtgttt  13434600                                                                                               ------                                                                                 ------------>CBF  <-                 <-----------RAV1(1)                                <------ZmHOX2a(1)      <---------       --------->ARR11(3)                    ---------->DOF2     <------ZmHOX2a(1)    --------->YAB1   ---------->DOF2          <-----------RAV1(1)       <---------ANAC58       --------->ANAC58 ------- ---->MYB52(2)  <---------ANAC46      <------------CBF<---------ANAC58       --------->ANAC58 <------   gtttcaaaagaactagttactggtgttgttttgttgtctctattgcagaaagaatggcttaatctgaggaggaagagactagccacaatcgaaacaacaa  13434700                                                                                        --------->ANAC58                                                                                        --------->TGA1a                                                                                        --------->ANAC46                                             <----------DOF2                            =============    <-------GAMYB                            <---------DAG2                             --------->ANAC55(2)   <---------MYB46(3)              ------>MYB46(1)                                      --------->bZIP60(2)  <---------AtMYB61                ------>MYB83                                         --------->ANAC58 ->GAMYB                           --------->MYB52(1)                                   <---------TGA1a ---------DOF2                   <---------MYB59                                     <---------ARR14(2) -ID1                     <---------WOX13(1)<---------ANAC58                 --------->ALFIN1------>ZmHOX2a(1) -->MYB46(3)         <------------CBF       <---------ANAC58                --------->ALFIN1 <------- ---MYB52(2) <----------DOF2 *TSS<---------MYB46(2)         <-------TEIL  <---------ZAT6--------->O2   acttttggttgaagcctttgagaaattgatggataccaaactgaatgcttttcgccaagagtttcatgagaaactagagttggggcagacacgtcctgga  13434800                                                                           --------->At4g35610           <---------AHL20(2)         ------->TEIL                         <---------At4g35610          --------->AHL20(2)       <---------REM1(1)                    <XXXXXXXXXXXXXXXXXXXXMIR830     <------ZmHOX2a(1)           --------->CCA1(2)                  <---------ALFIN1    ---------->DOF2 --------->TOE1(2)          ---------->DOF2    =========================HOX2a_HOX2a    <---------WRKY45 ======================================bZIP_DOF<------ZmHOX2a(2) <------ZmHOX2a(1)  --------->YAB1 --HSFB2a(2)           <xxxxxxxxxxxxxxxxsmallRNA(i)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   gaacgaaggagatttaatgagccgcttgagcaaagagatgaagctacagatcagtactatgggcataggagcacttcatctcacaatagtcaaagttgac  13434900                                  --------->ANAC58                                       ------>ZmHOX2a(2)                                  --------->ANAC58                                   --------->KAN4(1)                                <---------AtLEC2                               ---------->DOF2                           <----------DOF2                                  --------->ANAC58    <----                          ------>ZmHOX2a(2)                                 --------->ANAC58    <----                         <------ZmHOX2a(2)                           <---------ALFIN1<---------KAN4(1)                         <---------RVE1(1)               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <-------                        --------->AGP1 --------->GLK1(2)--------->TOE2(3)   --------->ANAC46<--------                        --------->ARR11(3)              --------->TOE1(3)  <---------LBD16<---------HSFB2a(2)     <---------ANAC58   <---------ARR11(3)            <---------TOE1(3)    --------->LBD16<----------     <---------ANAC58  <---------GLK1(1)        <---------ARR11(3)   --------->AtMYB61 --------->ARR11(3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       --------->ARR11(3)<-----------GT1   <---------KAN4(2)   accatagacgtgctagagatggtagagatcttttgcaagacaatcttggaggtcttaagcttaaaattccaccattccacggaaagaatgatccagatgc  13435000                                                        <------ZmHOX2a(2)                                                       <---------ARR14(2)                                                       --------->ARR14(2)                                                       --------->ARR11(3)                                                       --------->AGP1                                               <---------ZAT14        ----------->GT1                        --------->ZAT14 -----ANAC58                                 --------->ANAC46 -----ANAC58                            --------->REM1(1) --GLK1(2)                           --------->TOE2(3) <---------ARR11(3)                       ----- -At4g35610                          --------->TOE1(3)--------->GLK1(1)                  <---------ARR11(3) -RAV1(2)                    <<<<<<<<<MYB2 --------->ZAT6<-------TEIL   --------->ALFIN1 --------->ARR11(3)   ttatttggaatgggaaaacaagattgaattggttttcaaccttcaacactacaccgagatccatagggtaagagttggaggtttgaacagagatattcaa  13435100                                                                                              <------                                                                                              =======                                                                                             <------ZmHOX2a(2)                                                                                             ========                                                                                            ---------                                                                                            <--------                                     <---------REM1(1)                       =======================HOX2a_HOX2a                                     <-----------RAV1(1)      --------->At4g35610  --------->ARR11(3)                                    --------->ARR11(3)        <---------At4g35610  <---------ARR11(3) ---->ANAC46             ---------->DOF2               <---------YAB1        <------ZmHOX2a(1)-------   gacagattggagactcaatactatgttgaaagagaagagatgttgcacaaggcgattttgtttgagcagcaagttaagaggaagagttcttcacgatcta  13435200  Previous    Next  AGI:  At3g32895.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 5.6e-155 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus) Range:  from: 13434729    to: 13439255    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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