Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           ----------->GT1                         xxxxxxxxxxxxxxxx>smallRNA(i)                                  <xxxxxxxxxxxxx                       --------->ARR11(3)         <---------REM1(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                       <---------ARR11(3)       <-------GAMYB          ---------->ID1 ----------->RAV1(1)                ---------->DOF2                <-----------RAV1(1)    <-----------GT1--------->ANAC46            --------->TOE2(3)          <-----------GT1          <---------TOE2(3)    --------->REM1(1)            --------->TOE1(3)   xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <-   tggggtttcaaaaaccttcaaagaagatttcgaatgccgattaacttctctgttgtagcaatttcaaaggtttttcgttttgaaactacaccagtaaata  13343300                                     --------->ANAC55(2)             <------MYB83                                  ------>ZmHOX2a(1)                  <---------MYB46(3)                                ------>ZmHOX2a(2)                    <------MYB46(1)                               <------ZmHOX2a(2)                    <---------AtMYB61                              <---------ARR11(3)                   <--------P                              --------->ARR14(2)            <---------ANAC46  --------->DAG2   <-----           <XXXXXXXXXXXXXXXXXXXXMIR403                     --------->ATHB12  ---------->DOF2   <<<<<<    --------->ATHB12          <---------ARR14(2)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        ------   <---------YAB1             --------->ARR11(3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <------  <---------TOE2(3)           --------->AGP1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <------ xxxxxxxxxsmallRNA(si3)       <---------GLK1(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)           ------- --------WOX13(1)       <---------AHL20(2) <---------AHL20(2)<---------WOX13(1)             <--------   gattgatgtttgggtttgtgtttgaatttatagatcctcacttaatttatgggttaccagttgattggagttggtttgaaaaagtttttttttgtttcta  13343400 ----------AGL15 <<<<<<<AGL25               <---------AHL20(2) --------->AGL15            --------->AHL20(2) -----------AGL2        <------ZmHOX2a(1)                              <------ZmHOX2a(1) -----------AGL3        ----------->GT1                            ---------->DOF2  <---------YAB1 ---------->AGL3    ---------->DOF2                    --------->MYB52(1)           --------->ICU4 ---GT1        <----------DOF2                 ----------->GT1<----------DOF2 xxxxxxxxxxxxxxxxxxxxxxx   tttttggaggctgtgttctttgaaaaggattaaaattttgtttttggaatggtttcaaaacggtctttaaaaaggattatggagtaatgactgtgtttta  13343500                                  <----------DOF2                         <-----------GT1        ---------->DOF2       --------->ICU4                         <----------DOF2        <-------- >smallRNA(se3)        <---------ANAC46      ----------->GT1   ---------->DOF2 <---------ANAC46   <--   caagggtttttaaagtcttaaaacgacttgtaatgacttttgaaaaatggttttacaagggtttttaaagtcttttaaacgacttgtattgactatgttt  13343600                                                                                       <---------AHL20(2)                                                                                       --------->AHL20(1)                                                                                       --------->AHL20(2)                                                                                       <---------AHL20(1)                                                                       <---------AHL20(2)                                                                      --------->AHL20(1)                                                  <---------ARR11(3)  <---------AHL20(1)                                         <-----------TBP              --------->AHL20(2) -YAB1   <----------ID1              ----------->GT1           ----------->GT1  ----------->GT1 -------YAB1     <-------TEIL<-----------GT1      --------->ARR11(3)  <---------AHL20(2)<---------AHL20(2)   atgtttcgaaaactacaaatgcataatagatttacaaaatggtttttaaaacgatattcaaaactgtgttaatttaatgactgtgttaatttaatgactg  13343700                                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                              ------->TEIL                  <---------At4g35610                                            --------->ZAT14                 --------->At4g35610                                            <---------ZAT14                 <------NtERF2                                          --------------->AtSPL8    ------>MYB46(1)         --------->AHL20(2)               <---------------AtSPL3    ------>MYB83     xxxxxxxxxxxxxxxx         <---------AHL20(2)               --------------->AtSPL3    -------->P     ----------->GT1      ------->TEIL             *TSS     --------->GLK1(2)     xxxxxxxxxxxxxxxx>smallRNA(i)  <---------TOE2(3)          <---------------AtSPL8    ---------->DOF2  --------->ANAC46   tgttaatgtatttaatcaggttttgagaaaatgagtacaaagaaactgtacttccctaaaagactgttccaaccaggcagcgaagtagataatattacaa  13343800                 ------>ZmHOX2a(1)                --------->TOE2(3)     >>>>>>>GRF7                                 <---------GLK1(2)            --------->YAB1         <-----------HVH21        <---------ZAT6      xxxxxxxxxxxxxxxxxxxxx           <-------TEIL        <---------WRKY18(1)     xxxxxxxxxxxxxxxx>smallRNA(i)           ------>ZmHOX2a(1)    ---------->DOF2         <---------ANAC58     ---------->DOF2      --------->TOE2(3)     <-------- xxxxxx>smallRNA(fl3)       <---------ANAC58  <----------DOF2      <---------ALFIN1         ---------   gggtatcaaagcattcatccttcaaaattgtcttgactgtcagggaagctttagagccgatagagttcaacacattaatggacacattcttgggtcctat  13343900                                                                            --------->YAB1                                                                          ------>MYB83                                                                          ------>MYB46(1)                                                                         ----------->RAV1(1)                                                                        ------->GAMYB                                              <---------ICU4           --------->MYB46(3)                                             <---------YAB1            <---------MYB55(2)                                           --------->YAB1             -------->P       --------->At4g35610          <---------CCA1(2)           --------->ARR14(2)         <---------ANAC46 xx>smallRNA(si3)              --------->ANAC58                 <---------ARR14(2)       xxxxxxxxxxxx ---------AGL1                 --------->ANAC46                <------ZmHOX2a(1)        <---------TOE2(3) -------->AGL1   ------->TEIL  --------->ANAC58               ----------->GT1 ----------->TGA1<xxxxxx   agtggaatttgctgaaatggacttagcattttcaagccatatcgttcatcatttactcaagagaaggatactaaccaacaatgacgaattgtggtttgta  13344000                                                                            --------->At4g35610                                                                       <---------HSFB2a(2)                                                                       --------->HSFB2a(2)                                                                     --------->At4g35610                                                                     <---------At4g35610        ------->TEIL                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxx>smallRNA(si3)            --------->YAB1                ------->TEIL xxxxxxxxxxxxxxxxxsmallRNA(i2)       <---------YAB1       <---------ATHB12  <---------At4g35610------   tttgctgatcaacctatgcgattgtccctgagagagtttatcataacaacatgacttccaatggatgatgcatctggaagcagtccaaatgtgaagagaa  13344100                                                                       --------->ANAC58               <---------MYB46(3)                                 ----------->HVH21               ----------->GT1                                  >>>>>>>>>GATA-4              <---------ANAC46                                  >>>>>>>>>GATA-1        --------->DAG2  <---------ARR11(3)                      >>>>>>>>>GATA-2        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    ----------->GT1 >>>>>>>>>GATA-3            ------>ZmHOX2a(2)       ---------->DOF2  --------->ARR11(3)    --------->At4g35610<---------WOX13(1)      <---------ARR11(3)  ---------->DOF2   ---------->DOF2        ---------->DOF2 --------->ALFIN1          <-----------GT1 ---->DOF2 --------->ALFIN1       <----------DOF2    ---------->DOF2   --------->ANAC58  --------->ARR11(3)   agaagaaagaaaagtggtggataaaagataatacgactttgaagggaaagcagaaaaaagagtgtggattgacaaggaaatgagttttatcgatcttaca  13344200  Previous    Next  AGI:  At3g32391.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 13343731    to: 13345651    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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